Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04355 and DZA65_RS04360 are separated by 47 nucleotides DZA65_RS04360 and DZA65_RS04370 are separated by 424 nucleotides DZA65_RS04370 and DZA65_RS04375 are separated by 175 nucleotides
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
DZA65_RS04360: DZA65_RS04360 - phosphocarrier protein Hpr, at 910,587 to 910,844
_RS04360
DZA65_RS04370: DZA65_RS04370 - cysteine synthase A, at 911,269 to 912,237
_RS04370
DZA65_RS04375: DZA65_RS04375 - sulfate transporter CysZ, at 912,413 to 913,183
_RS04375
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.311 kb on + strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.312 kb on - strand, within DZA65_RS04355 at 910.371 kb on + strand at 910.486 kb on + strand at 910.519 kb on + strand at 910.522 kb on + strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.525 kb on + strand at 910.525 kb on + strand at 910.526 kb on - strand at 910.550 kb on + strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.827 kb on + strand at 910.828 kb on - strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.904 kb on + strand at 910.904 kb on + strand at 910.905 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.069 kb on - strand at 911.074 kb on + strand at 911.074 kb on + strand at 911.075 kb on - strand at 911.095 kb on - strand at 911.135 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.216 kb on + strand at 911.251 kb on + strand at 911.263 kb on + strand at 911.264 kb on - strand at 911.270 kb on + strand at 911.270 kb on + strand at 911.271 kb on - strand at 911.271 kb on - strand at 911.316 kb on + strand at 911.350 kb on + strand at 911.350 kb on + strand at 911.351 kb on - strand at 911.538 kb on + strand, within DZA65_RS04370 at 911.539 kb on - strand, within DZA65_RS04370 at 911.675 kb on + strand, within DZA65_RS04370 at 911.676 kb on - strand, within DZA65_RS04370 at 911.676 kb on - strand, within DZA65_RS04370 at 911.825 kb on + strand, within DZA65_RS04370 at 911.826 kb on - strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.946 kb on + strand, within DZA65_RS04370 at 911.947 kb on - strand, within DZA65_RS04370 at 911.947 kb on - strand, within DZA65_RS04370 at 911.979 kb on + strand, within DZA65_RS04370 at 911.980 kb on - strand, within DZA65_RS04370 at 911.980 kb on - strand, within DZA65_RS04370 at 912.002 kb on + strand, within DZA65_RS04370 at 912.003 kb on - strand, within DZA65_RS04370 at 912.022 kb on - strand, within DZA65_RS04370 at 912.041 kb on - strand, within DZA65_RS04370 at 912.041 kb on - strand, within DZA65_RS04370 at 912.157 kb on - strand at 912.157 kb on - strand at 912.196 kb on - strand at 912.224 kb on + strand at 912.225 kb on - strand at 912.225 kb on - strand at 912.231 kb on + strand at 912.231 kb on + strand at 912.232 kb on - strand at 912.232 kb on - strand at 912.232 kb on - strand at 912.238 kb on - strand at 912.248 kb on + strand at 912.252 kb on - strand at 912.252 kb on - strand at 912.287 kb on - strand at 912.287 kb on - strand at 912.312 kb on - strand at 912.312 kb on - strand at 912.318 kb on + strand at 912.318 kb on + strand at 912.318 kb on + strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.319 kb on - strand at 912.322 kb on + strand at 912.322 kb on + strand at 912.322 kb on + strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.323 kb on - strand at 912.331 kb on - strand at 912.346 kb on - strand at 912.346 kb on - strand at 912.367 kb on + strand at 912.368 kb on - strand at 912.368 kb on - strand at 912.369 kb on + strand at 912.370 kb on - strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.376 kb on + strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.377 kb on - strand at 912.380 kb on - strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.414 kb on + strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.415 kb on - strand at 912.447 kb on + strand at 912.493 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.523 kb on + strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.524 kb on - strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.527 kb on + strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.528 kb on - strand, within DZA65_RS04375 at 912.625 kb on - strand, within DZA65_RS04375 at 912.633 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.731 kb on + strand, within DZA65_RS04375 at 912.732 kb on - strand, within DZA65_RS04375 at 912.732 kb on - strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.744 kb on + strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.745 kb on - strand, within DZA65_RS04375 at 912.747 kb on + strand, within DZA65_RS04375 at 912.747 kb on + strand, within DZA65_RS04375 at 912.748 kb on - strand, within DZA65_RS04375 at 912.748 kb on - strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.752 kb on + strand, within DZA65_RS04375 at 912.898 kb on + strand, within DZA65_RS04375 at 912.898 kb on + strand at 912.899 kb on - strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.912 kb on + strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.913 kb on - strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.920 kb on + strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 912.961 kb on - strand, within DZA65_RS04375 at 913.063 kb on + strand, within DZA65_RS04375 at 913.067 kb on - strand, within DZA65_RS04375 at 913.137 kb on + strand at 913.137 kb on + strand at 913.137 kb on + strand at 913.137 kb on + strand at 913.138 kb on - strand at 913.177 kb on - strand at 913.177 kb on - strand at 913.183 kb on + strand at 913.183 kb on + strand at 913.183 kb on + strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.184 kb on - strand at 913.186 kb on + strand at 913.186 kb on + strand at 913.186 kb on + strand at 913.187 kb on - strand at 913.187 kb on - strand at 913.200 kb on + strand at 913.200 kb on + strand at 913.201 kb on - strand at 913.201 kb on - strand at 913.205 kb on + strand at 913.206 kb on - strand at 913.206 kb on - strand at 913.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 910,311 + DZA65_RS04355 0.87 -0.3 910,311 + DZA65_RS04355 0.87 -2.2 910,312 - DZA65_RS04355 0.87 -0.2 910,371 + +0.1 910,486 + +0.8 910,519 + -1.4 910,522 + +0.1 910,523 - -0.9 910,523 - +0.1 910,523 - -1.6 910,525 + -0.3 910,525 + -2.1 910,526 - +0.0 910,550 + +0.3 910,551 - +0.3 910,551 - -0.9 910,551 - +0.0 910,827 + -1.3 910,828 - -0.7 910,900 + -0.7 910,900 + -0.3 910,900 + +0.2 910,900 + -0.4 910,901 - +0.3 910,901 - -0.0 910,901 - +0.8 910,901 - -0.6 910,904 + -0.3 910,904 + +0.1 910,905 - -1.4 910,915 - -0.6 910,915 - +0.6 910,915 - -0.1 911,068 + -0.9 911,068 + +0.3 911,069 - +0.0 911,074 + -1.1 911,074 + -1.1 911,075 - -1.3 911,095 - -0.8 911,135 - +0.9 911,161 - -0.3 911,161 - -1.4 911,161 - +1.0 911,216 + -0.3 911,251 + -0.3 911,263 + +0.4 911,264 - -0.3 911,270 + -0.5 911,270 + +1.3 911,271 - +0.0 911,271 - -0.7 911,316 + -0.1 911,350 + +0.9 911,350 + +0.3 911,351 - +0.3 911,538 + DZA65_RS04370 0.28 -0.7 911,539 - DZA65_RS04370 0.28 -0.7 911,675 + DZA65_RS04370 0.42 -0.4 911,676 - DZA65_RS04370 0.42 +0.0 911,676 - DZA65_RS04370 0.42 -0.3 911,825 + DZA65_RS04370 0.57 -0.3 911,826 - DZA65_RS04370 0.57 -0.7 911,946 + DZA65_RS04370 0.70 -1.4 911,946 + DZA65_RS04370 0.70 -0.4 911,946 + DZA65_RS04370 0.70 +0.3 911,946 + DZA65_RS04370 0.70 -0.7 911,947 - DZA65_RS04370 0.70 +0.0 911,947 - DZA65_RS04370 0.70 -1.8 911,979 + DZA65_RS04370 0.73 -0.8 911,980 - DZA65_RS04370 0.73 -1.4 911,980 - DZA65_RS04370 0.73 +0.6 912,002 + DZA65_RS04370 0.76 -0.3 912,003 - DZA65_RS04370 0.76 -2.0 912,022 - DZA65_RS04370 0.78 -0.5 912,041 - DZA65_RS04370 0.80 +0.0 912,041 - DZA65_RS04370 0.80 -0.4 912,157 - -2.1 912,157 - -0.2 912,196 - +0.5 912,224 + -0.4 912,225 - +0.2 912,225 - -0.5 912,231 + -1.2 912,231 + +0.0 912,232 - +0.1 912,232 - +0.1 912,232 - -1.8 912,238 - +1.7 912,248 + +0.3 912,252 - -0.3 912,252 - -0.0 912,287 - +0.2 912,287 - -0.4 912,312 - +0.3 912,312 - -0.8 912,318 + -0.4 912,318 + +0.5 912,318 + -0.5 912,319 - +1.7 912,319 - -1.1 912,319 - +0.3 912,319 - +0.6 912,319 - -1.3 912,322 + +0.5 912,322 + +0.1 912,322 + -2.0 912,323 - -0.3 912,323 - -0.4 912,323 - -0.1 912,323 - -0.5 912,323 - -1.8 912,323 - +0.8 912,331 - -0.3 912,346 - -0.1 912,346 - +0.0 912,367 + +0.2 912,368 - +0.1 912,368 - +0.2 912,369 + +0.5 912,370 - +0.3 912,376 + +2.1 912,376 + -0.4 912,376 + +1.6 912,376 + -0.5 912,376 + -1.8 912,377 - -0.1 912,377 - -1.4 912,377 - -1.3 912,377 - -1.3 912,377 - +0.6 912,380 - +0.4 912,414 + -0.3 912,414 + -1.2 912,414 + -0.5 912,414 + +0.1 912,415 - -0.7 912,415 - +0.3 912,415 - +0.3 912,415 - -2.8 912,415 - -0.2 912,447 + +0.2 912,493 + DZA65_RS04375 0.10 -1.8 912,523 + DZA65_RS04375 0.14 +0.7 912,523 + DZA65_RS04375 0.14 -0.1 912,523 + DZA65_RS04375 0.14 +0.8 912,523 + DZA65_RS04375 0.14 -0.2 912,524 - DZA65_RS04375 0.14 -0.0 912,524 - DZA65_RS04375 0.14 +0.9 912,524 - DZA65_RS04375 0.14 +0.5 912,527 + DZA65_RS04375 0.15 -0.2 912,527 + DZA65_RS04375 0.15 -0.5 912,527 + DZA65_RS04375 0.15 +0.9 912,527 + DZA65_RS04375 0.15 +0.3 912,527 + DZA65_RS04375 0.15 -0.3 912,528 - DZA65_RS04375 0.15 +0.9 912,528 - DZA65_RS04375 0.15 -0.1 912,528 - DZA65_RS04375 0.15 -1.3 912,528 - DZA65_RS04375 0.15 -0.8 912,528 - DZA65_RS04375 0.15 -1.4 912,528 - DZA65_RS04375 0.15 +0.3 912,528 - DZA65_RS04375 0.15 +0.5 912,528 - DZA65_RS04375 0.15 -0.3 912,528 - DZA65_RS04375 0.15 +0.0 912,528 - DZA65_RS04375 0.15 -0.5 912,528 - DZA65_RS04375 0.15 -1.3 912,528 - DZA65_RS04375 0.15 +2.3 912,528 - DZA65_RS04375 0.15 -0.5 912,528 - DZA65_RS04375 0.15 -0.5 912,528 - DZA65_RS04375 0.15 +0.3 912,528 - DZA65_RS04375 0.15 -0.2 912,528 - DZA65_RS04375 0.15 -0.5 912,625 - DZA65_RS04375 0.27 +0.7 912,633 + DZA65_RS04375 0.29 -0.5 912,731 + DZA65_RS04375 0.41 +0.3 912,731 + DZA65_RS04375 0.41 +1.1 912,731 + DZA65_RS04375 0.41 -1.1 912,731 + DZA65_RS04375 0.41 +0.3 912,732 - DZA65_RS04375 0.41 -0.1 912,732 - DZA65_RS04375 0.41 -0.3 912,744 + DZA65_RS04375 0.43 -0.1 912,744 + DZA65_RS04375 0.43 -1.4 912,744 + DZA65_RS04375 0.43 +0.7 912,745 - DZA65_RS04375 0.43 -0.6 912,745 - DZA65_RS04375 0.43 -1.0 912,745 - DZA65_RS04375 0.43 -0.4 912,745 - DZA65_RS04375 0.43 +0.8 912,745 - DZA65_RS04375 0.43 -0.8 912,747 + DZA65_RS04375 0.43 -0.3 912,747 + DZA65_RS04375 0.43 +0.5 912,748 - DZA65_RS04375 0.43 +0.7 912,748 - DZA65_RS04375 0.43 +0.1 912,752 + DZA65_RS04375 0.44 -0.5 912,752 + DZA65_RS04375 0.44 -0.2 912,752 + DZA65_RS04375 0.44 +1.1 912,898 + DZA65_RS04375 0.63 -0.7 912,898 + +2.1 912,899 - DZA65_RS04375 0.63 +0.8 912,912 + DZA65_RS04375 0.65 -0.9 912,912 + DZA65_RS04375 0.65 +0.0 912,912 + DZA65_RS04375 0.65 +0.9 912,913 - DZA65_RS04375 0.65 +0.4 912,913 - DZA65_RS04375 0.65 +0.8 912,913 - DZA65_RS04375 0.65 +0.6 912,913 - DZA65_RS04375 0.65 +0.0 912,913 - DZA65_RS04375 0.65 +0.3 912,913 - DZA65_RS04375 0.65 +0.1 912,920 + DZA65_RS04375 0.66 +0.7 912,920 + DZA65_RS04375 0.66 +1.0 912,920 + DZA65_RS04375 0.66 -0.1 912,920 + DZA65_RS04375 0.66 +1.3 912,961 - DZA65_RS04375 0.71 +0.1 912,961 - DZA65_RS04375 0.71 -0.3 912,961 - DZA65_RS04375 0.71 +0.9 912,961 - DZA65_RS04375 0.71 -0.6 912,961 - DZA65_RS04375 0.71 -0.5 913,063 + DZA65_RS04375 0.84 +1.1 913,067 - DZA65_RS04375 0.85 +0.2 913,137 + -0.5 913,137 + -0.9 913,137 + -0.1 913,137 + +0.5 913,138 - -1.1 913,177 - +1.3 913,177 - -0.2 913,183 + -1.0 913,183 + -0.2 913,183 + +0.5 913,184 - -0.4 913,184 - +0.3 913,184 - +0.0 913,184 - +0.1 913,184 - -1.0 913,184 - -0.3 913,184 - +0.3 913,184 - -1.1 913,184 - +0.6 913,184 - -1.0 913,184 - -1.0 913,184 - +0.0 913,184 - -0.5 913,186 + -0.7 913,186 + -0.7 913,186 + +0.1 913,187 - +0.0 913,187 - +0.4 913,200 + -1.0 913,200 + -0.3 913,201 - +0.0 913,201 - +0.5 913,205 + +1.1 913,206 - -1.4 913,206 - -0.3 913,224 + +0.9
Or see this region's nucleotide sequence