Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04305 and DZA65_RS04310 are separated by 240 nucleotides DZA65_RS04310 and DZA65_RS04315 are separated by 91 nucleotides DZA65_RS04315 and DZA65_RS04320 are separated by 15 nucleotides
DZA65_RS04305: DZA65_RS04305 - cytosine permease, at 897,890 to 899,185
_RS04305
DZA65_RS04310: DZA65_RS04310 - Dyp-type peroxidase, at 899,426 to 900,325
_RS04310
DZA65_RS04315: DZA65_RS04315 - cysteine synthase CysM, at 900,417 to 901,298
_RS04315
DZA65_RS04320: DZA65_RS04320 - MacB family efflux pump subunit, at 901,314 to 903,260
_RS04320
Position (kb) 899
900
901 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 898.468 kb on + strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.548 kb on - strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.713 kb on + strand, within DZA65_RS04305 at 898.749 kb on - strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.837 kb on + strand, within DZA65_RS04305 at 898.838 kb on - strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.949 kb on - strand, within DZA65_RS04305 at 899.017 kb on + strand, within DZA65_RS04305 at 899.018 kb on - strand, within DZA65_RS04305 at 899.132 kb on + strand at 899.133 kb on - strand at 899.133 kb on - strand at 899.133 kb on - strand at 899.140 kb on + strand at 899.141 kb on - strand at 899.170 kb on + strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.180 kb on - strand at 899.183 kb on + strand at 899.183 kb on + strand at 899.184 kb on - strand at 899.196 kb on + strand at 899.236 kb on - strand at 899.236 kb on - strand at 899.239 kb on + strand at 899.239 kb on + strand at 899.293 kb on + strand at 899.294 kb on - strand at 899.294 kb on - strand at 899.294 kb on - strand at 899.346 kb on + strand at 899.346 kb on + strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.362 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.447 kb on - strand at 899.488 kb on + strand at 899.493 kb on + strand at 899.493 kb on + strand at 899.494 kb on - strand at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.929 kb on + strand, within DZA65_RS04310 at 899.930 kb on - strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.135 kb on - strand, within DZA65_RS04310 at 900.135 kb on - strand, within DZA65_RS04310 at 900.164 kb on + strand, within DZA65_RS04310 at 900.164 kb on + strand, within DZA65_RS04310 at 900.165 kb on - strand, within DZA65_RS04310 at 900.177 kb on - strand, within DZA65_RS04310 at 900.191 kb on + strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.250 kb on + strand at 900.250 kb on + strand at 900.284 kb on + strand at 900.285 kb on - strand at 900.315 kb on + strand at 900.321 kb on + strand at 900.321 kb on + strand at 900.322 kb on - strand at 900.323 kb on + strand at 900.324 kb on - strand at 900.338 kb on + strand at 900.338 kb on + strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.342 kb on + strand at 900.342 kb on + strand at 900.343 kb on - strand at 900.463 kb on + strand at 900.463 kb on + strand at 900.463 kb on + strand at 900.464 kb on - strand at 900.603 kb on - strand, within DZA65_RS04315 at 900.698 kb on + strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.732 kb on + strand, within DZA65_RS04315 at 900.732 kb on + strand, within DZA65_RS04315 at 900.990 kb on - strand, within DZA65_RS04315 at 900.990 kb on - strand, within DZA65_RS04315 at 900.998 kb on + strand, within DZA65_RS04315 at 900.999 kb on - strand, within DZA65_RS04315 at 901.034 kb on - strand, within DZA65_RS04315 at 901.062 kb on + strand, within DZA65_RS04315 at 901.063 kb on - strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.272 kb on + strand at 901.315 kb on + strand at 901.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 898,468 + DZA65_RS04305 0.45 -0.2 898,469 - DZA65_RS04305 0.45 +0.3 898,469 - DZA65_RS04305 0.45 +0.3 898,492 + DZA65_RS04305 0.46 +0.3 898,492 + DZA65_RS04305 0.46 -0.6 898,492 + DZA65_RS04305 0.46 +0.3 898,493 - DZA65_RS04305 0.47 -1.6 898,493 - DZA65_RS04305 0.47 +0.5 898,493 - DZA65_RS04305 0.47 -0.5 898,493 - DZA65_RS04305 0.47 -1.8 898,493 - DZA65_RS04305 0.47 -0.4 898,510 + DZA65_RS04305 0.48 +0.3 898,510 + DZA65_RS04305 0.48 -1.3 898,510 + DZA65_RS04305 0.48 -0.2 898,510 + DZA65_RS04305 0.48 +0.1 898,510 + DZA65_RS04305 0.48 -1.5 898,510 + DZA65_RS04305 0.48 -0.2 898,510 + DZA65_RS04305 0.48 -0.5 898,510 + DZA65_RS04305 0.48 -0.4 898,511 - DZA65_RS04305 0.48 +0.7 898,511 - DZA65_RS04305 0.48 -1.0 898,511 - DZA65_RS04305 0.48 -0.8 898,547 + DZA65_RS04305 0.51 -0.5 898,547 + DZA65_RS04305 0.51 -0.4 898,548 - DZA65_RS04305 0.51 -0.5 898,669 + DZA65_RS04305 0.60 -0.0 898,669 + DZA65_RS04305 0.60 +0.3 898,669 + DZA65_RS04305 0.60 -1.3 898,669 + DZA65_RS04305 0.60 -0.5 898,670 - DZA65_RS04305 0.60 -1.7 898,670 - DZA65_RS04305 0.60 -0.2 898,713 + DZA65_RS04305 0.64 -0.2 898,749 - DZA65_RS04305 0.66 +0.0 898,808 + DZA65_RS04305 0.71 +0.4 898,808 + DZA65_RS04305 0.71 -0.4 898,808 + DZA65_RS04305 0.71 +0.3 898,809 - DZA65_RS04305 0.71 +1.3 898,809 - DZA65_RS04305 0.71 -0.3 898,837 + DZA65_RS04305 0.73 +0.0 898,838 - DZA65_RS04305 0.73 +1.1 898,943 + DZA65_RS04305 0.81 -0.1 898,943 + DZA65_RS04305 0.81 -0.3 898,943 + DZA65_RS04305 0.81 -0.5 898,943 + DZA65_RS04305 0.81 +0.9 898,943 + DZA65_RS04305 0.81 +0.2 898,943 + DZA65_RS04305 0.81 -1.0 898,944 - DZA65_RS04305 0.81 -0.3 898,944 - DZA65_RS04305 0.81 -0.4 898,944 - DZA65_RS04305 0.81 +0.0 898,944 - DZA65_RS04305 0.81 +0.4 898,944 - DZA65_RS04305 0.81 -1.8 898,944 - DZA65_RS04305 0.81 +0.2 898,944 - DZA65_RS04305 0.81 -0.6 898,944 - DZA65_RS04305 0.81 -0.3 898,944 - DZA65_RS04305 0.81 +0.9 898,944 - DZA65_RS04305 0.81 +0.1 898,946 + DZA65_RS04305 0.81 -0.2 898,946 + DZA65_RS04305 0.81 +0.3 898,946 + DZA65_RS04305 0.81 -0.3 898,946 + DZA65_RS04305 0.81 +0.3 898,946 + DZA65_RS04305 0.81 +0.2 898,946 + DZA65_RS04305 0.81 +0.3 898,947 - DZA65_RS04305 0.82 -0.8 898,947 - DZA65_RS04305 0.82 +1.0 898,947 - DZA65_RS04305 0.82 +0.2 898,948 + DZA65_RS04305 0.82 +0.4 898,948 + DZA65_RS04305 0.82 +0.4 898,948 + DZA65_RS04305 0.82 -1.5 898,949 - DZA65_RS04305 0.82 +1.5 899,017 + DZA65_RS04305 0.87 -0.4 899,018 - DZA65_RS04305 0.87 +0.5 899,132 + -0.5 899,133 - +0.1 899,133 - -0.3 899,133 - -0.1 899,140 + -0.7 899,141 - -0.4 899,170 + +0.1 899,171 - +0.2 899,171 - -0.6 899,171 - +0.6 899,171 - +1.5 899,180 - +1.3 899,183 + -0.5 899,183 + -1.8 899,184 - -0.4 899,196 + -0.1 899,236 - +0.3 899,236 - +0.7 899,239 + +0.9 899,239 + -0.1 899,293 + +1.1 899,294 - +1.9 899,294 - -0.7 899,294 - +0.3 899,346 + -0.3 899,346 + +1.3 899,347 - -1.7 899,347 - -1.7 899,347 - +1.0 899,347 - -0.9 899,348 + +0.3 899,348 + -0.1 899,348 + +0.4 899,348 + +0.7 899,348 + -1.6 899,348 + +0.2 899,348 + +0.9 899,349 - -2.5 899,349 - -2.9 899,349 - +0.6 899,349 - -0.7 899,349 - -0.7 899,349 - +0.3 899,349 - -3.1 899,362 + -1.3 899,423 + +0.3 899,423 + -1.4 899,423 + -2.1 899,423 + -1.3 899,423 + -2.1 899,423 + +0.3 899,424 - -2.1 899,424 - -0.7 899,424 - -0.7 899,424 - -2.1 899,424 - -0.7 899,424 - -1.0 899,424 - -1.5 899,447 - -1.0 899,488 + +0.3 899,493 + -0.4 899,493 + -2.0 899,494 - -2.6 899,527 + DZA65_RS04310 0.11 +0.6 899,527 + DZA65_RS04310 0.11 -1.0 899,527 + DZA65_RS04310 0.11 -3.9 899,527 + DZA65_RS04310 0.11 -3.9 899,929 + DZA65_RS04310 0.56 -1.3 899,930 - DZA65_RS04310 0.56 -1.7 899,933 + DZA65_RS04310 0.56 -1.3 899,933 + DZA65_RS04310 0.56 -3.0 899,933 + DZA65_RS04310 0.56 -3.4 899,933 + DZA65_RS04310 0.56 -2.0 899,933 + DZA65_RS04310 0.56 -2.3 899,933 + DZA65_RS04310 0.56 -1.7 899,933 + DZA65_RS04310 0.56 -2.9 899,933 + DZA65_RS04310 0.56 +0.8 899,933 + DZA65_RS04310 0.56 -2.6 899,933 + DZA65_RS04310 0.56 -2.1 899,933 + DZA65_RS04310 0.56 -2.0 899,933 + DZA65_RS04310 0.56 -0.7 899,933 + DZA65_RS04310 0.56 -0.3 899,933 + DZA65_RS04310 0.56 -0.3 899,933 + DZA65_RS04310 0.56 -1.3 899,933 + DZA65_RS04310 0.56 -1.0 899,933 + DZA65_RS04310 0.56 -1.7 899,933 + DZA65_RS04310 0.56 -1.7 899,934 - DZA65_RS04310 0.56 +0.7 899,934 - DZA65_RS04310 0.56 -2.4 899,934 - DZA65_RS04310 0.56 -1.8 899,934 - DZA65_RS04310 0.56 -3.1 899,934 - DZA65_RS04310 0.56 -1.9 899,934 - DZA65_RS04310 0.56 -3.9 899,934 - DZA65_RS04310 0.56 -0.8 899,934 - DZA65_RS04310 0.56 -1.8 899,934 - DZA65_RS04310 0.56 -0.3 900,134 + DZA65_RS04310 0.79 -4.3 900,134 + DZA65_RS04310 0.79 -2.6 900,134 + DZA65_RS04310 0.79 -1.8 900,134 + DZA65_RS04310 0.79 -1.5 900,135 - DZA65_RS04310 0.79 -1.7 900,135 - DZA65_RS04310 0.79 -0.5 900,164 + DZA65_RS04310 0.82 -1.8 900,164 + DZA65_RS04310 0.82 -1.0 900,165 - DZA65_RS04310 0.82 -2.1 900,177 - DZA65_RS04310 0.83 -0.7 900,191 + DZA65_RS04310 0.85 -3.6 900,192 - DZA65_RS04310 0.85 -0.7 900,192 - DZA65_RS04310 0.85 -3.6 900,192 - DZA65_RS04310 0.85 -2.4 900,217 + DZA65_RS04310 0.88 -1.8 900,217 + DZA65_RS04310 0.88 -2.3 900,217 + DZA65_RS04310 0.88 -3.5 900,217 + DZA65_RS04310 0.88 -2.8 900,218 - DZA65_RS04310 0.88 -2.0 900,218 - DZA65_RS04310 0.88 -1.7 900,218 - DZA65_RS04310 0.88 -2.9 900,218 - DZA65_RS04310 0.88 -3.4 900,218 - DZA65_RS04310 0.88 -2.1 900,250 + -3.1 900,250 + -1.7 900,284 + +0.3 900,285 - +0.3 900,315 + -1.8 900,321 + -0.7 900,321 + -2.3 900,322 - -3.5 900,323 + +0.9 900,324 - -0.9 900,338 + +1.0 900,338 + -0.8 900,339 - -0.2 900,339 - +0.0 900,339 - -0.9 900,339 - -0.4 900,339 - -1.6 900,342 + -0.5 900,342 + -0.3 900,343 - -0.3 900,463 + +1.0 900,463 + +0.7 900,463 + -0.1 900,464 - -0.1 900,603 - DZA65_RS04315 0.21 -0.5 900,698 + DZA65_RS04315 0.32 +0.5 900,699 - DZA65_RS04315 0.32 -1.0 900,699 - DZA65_RS04315 0.32 +1.1 900,699 - DZA65_RS04315 0.32 +0.2 900,732 + DZA65_RS04315 0.36 -0.3 900,732 + DZA65_RS04315 0.36 -1.1 900,990 - DZA65_RS04315 0.65 +0.6 900,990 - DZA65_RS04315 0.65 -0.7 900,998 + DZA65_RS04315 0.66 +0.1 900,999 - DZA65_RS04315 0.66 -0.8 901,034 - DZA65_RS04315 0.70 +0.6 901,062 + DZA65_RS04315 0.73 -0.6 901,063 - DZA65_RS04315 0.73 -1.9 901,109 + DZA65_RS04315 0.78 +0.2 901,109 + DZA65_RS04315 0.78 -0.1 901,109 + DZA65_RS04315 0.78 -1.4 901,109 + DZA65_RS04315 0.78 +0.5 901,109 + DZA65_RS04315 0.78 +0.1 901,109 + DZA65_RS04315 0.78 +0.3 901,109 + DZA65_RS04315 0.78 -1.5 901,109 + DZA65_RS04315 0.78 +0.2 901,110 - DZA65_RS04315 0.79 -0.1 901,110 - DZA65_RS04315 0.79 +0.0 901,110 - DZA65_RS04315 0.79 -0.3 901,110 - DZA65_RS04315 0.79 +0.4 901,110 - DZA65_RS04315 0.79 +0.1 901,272 + -0.8 901,315 + -0.1 901,316 - +0.7
Or see this region's nucleotide sequence