Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04040 and DZA65_RS04045 overlap by 4 nucleotides DZA65_RS04045 and DZA65_RS04050 overlap by 1 nucleotides DZA65_RS04050 and DZA65_RS04055 overlap by 4 nucleotides
DZA65_RS04040: DZA65_RS04040 - hypothetical protein, at 852,546 to 852,776
_RS04040
DZA65_RS04045: DZA65_RS04045 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 852,773 to 853,729
_RS04045
DZA65_RS04050: DZA65_RS04050 - DNA cytosine methyltransferase, at 853,729 to 854,557
_RS04050
DZA65_RS04055: DZA65_RS04055 - replication endonuclease, at 854,554 to 856,608
_RS04055
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.773 kb on - strand at 852.773 kb on - strand at 852.847 kb on - strand at 852.920 kb on + strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.959 kb on + strand, within DZA65_RS04045 at 853.028 kb on - strand, within DZA65_RS04045 at 853.040 kb on + strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.043 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.110 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.166 kb on - strand, within DZA65_RS04045 at 853.197 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.359 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.496 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.683 kb on - strand at 853.683 kb on - strand at 853.683 kb on - strand at 853.745 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.828 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.913 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.128 kb on - strand, within DZA65_RS04050 at 854.154 kb on - strand, within DZA65_RS04050 at 854.220 kb on - strand, within DZA65_RS04050 at 854.302 kb on + strand, within DZA65_RS04050 at 854.314 kb on + strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.352 kb on - strand, within DZA65_RS04050 at 854.394 kb on + strand, within DZA65_RS04050 at 854.395 kb on - strand, within DZA65_RS04050 at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.522 kb on + strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.524 kb on + strand at 854.524 kb on + strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.535 kb on - strand at 854.535 kb on - strand at 854.564 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.654 kb on - strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.680 kb on - strand at 854.710 kb on + strand at 854.711 kb on - strand at 854.731 kb on + strand at 854.731 kb on + strand at 854.743 kb on + strand at 854.743 kb on + strand at 854.808 kb on + strand, within DZA65_RS04055 at 854.808 kb on + strand, within DZA65_RS04055 at 854.809 kb on - strand, within DZA65_RS04055 at 854.809 kb on - strand, within DZA65_RS04055 at 854.817 kb on - strand, within DZA65_RS04055 at 854.817 kb on - strand at 854.817 kb on - strand, within DZA65_RS04055 at 854.840 kb on + strand, within DZA65_RS04055 at 854.840 kb on + strand, within DZA65_RS04055 at 854.873 kb on - strand, within DZA65_RS04055 at 854.917 kb on + strand, within DZA65_RS04055 at 854.917 kb on + strand, within DZA65_RS04055 at 854.918 kb on - strand, within DZA65_RS04055 at 855.013 kb on + strand, within DZA65_RS04055 at 855.014 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.048 kb on - strand, within DZA65_RS04055 at 855.101 kb on + strand, within DZA65_RS04055 at 855.102 kb on - strand, within DZA65_RS04055 at 855.124 kb on + strand, within DZA65_RS04055 at 855.141 kb on + strand at 855.188 kb on + strand, within DZA65_RS04055 at 855.189 kb on - strand, within DZA65_RS04055 at 855.189 kb on - strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.255 kb on + strand, within DZA65_RS04055 at 855.256 kb on - strand at 855.256 kb on - strand, within DZA65_RS04055 at 855.256 kb on - strand, within DZA65_RS04055 at 855.256 kb on - strand, within DZA65_RS04055 at 855.299 kb on - strand, within DZA65_RS04055 at 855.554 kb on + strand, within DZA65_RS04055 at 855.555 kb on - strand, within DZA65_RS04055 at 855.555 kb on - strand, within DZA65_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 852,773 - -0.1 852,773 - -0.1 852,847 - -0.4 852,920 + DZA65_RS04045 0.15 -0.1 852,921 - DZA65_RS04045 0.15 +0.6 852,921 - DZA65_RS04045 0.15 +0.7 852,959 + DZA65_RS04045 0.19 +0.2 853,028 - DZA65_RS04045 0.27 -0.1 853,040 + DZA65_RS04045 0.28 +0.3 853,041 - DZA65_RS04045 0.28 -0.5 853,041 - DZA65_RS04045 0.28 -0.5 853,043 + DZA65_RS04045 0.28 +0.3 853,059 + DZA65_RS04045 0.30 -0.5 853,059 + DZA65_RS04045 0.30 +0.0 853,059 + DZA65_RS04045 0.30 +2.6 853,060 - DZA65_RS04045 0.30 +0.1 853,060 - DZA65_RS04045 0.30 -1.2 853,060 - DZA65_RS04045 0.30 -0.8 853,060 - DZA65_RS04045 0.30 +0.9 853,060 - DZA65_RS04045 0.30 -0.4 853,060 - DZA65_RS04045 0.30 -0.2 853,110 - DZA65_RS04045 0.35 +1.0 853,146 - DZA65_RS04045 0.39 +0.9 853,146 - DZA65_RS04045 0.39 +1.1 853,166 - DZA65_RS04045 0.41 +0.3 853,197 - DZA65_RS04045 0.44 +1.2 853,323 - DZA65_RS04045 0.57 +0.2 853,323 - DZA65_RS04045 0.57 +1.7 853,323 - DZA65_RS04045 0.57 -0.7 853,323 - DZA65_RS04045 0.57 -0.5 853,323 - DZA65_RS04045 0.57 -0.0 853,323 - DZA65_RS04045 0.57 +1.2 853,323 - DZA65_RS04045 0.57 -0.4 853,323 - DZA65_RS04045 0.57 -0.3 853,323 - DZA65_RS04045 0.57 +0.9 853,323 - DZA65_RS04045 0.57 -0.6 853,323 - DZA65_RS04045 0.57 -0.7 853,323 - DZA65_RS04045 0.57 +0.3 853,323 - DZA65_RS04045 0.57 +0.5 853,323 - DZA65_RS04045 0.57 -1.2 853,323 - DZA65_RS04045 0.57 +0.1 853,323 - DZA65_RS04045 0.57 +0.0 853,359 - DZA65_RS04045 0.61 -0.1 853,392 - DZA65_RS04045 0.65 +0.0 853,392 - DZA65_RS04045 0.65 -0.2 853,392 - DZA65_RS04045 0.65 -0.7 853,392 - DZA65_RS04045 0.65 -1.0 853,392 - DZA65_RS04045 0.65 -0.7 853,392 - DZA65_RS04045 0.65 +0.3 853,414 - DZA65_RS04045 0.67 -0.5 853,414 - DZA65_RS04045 0.67 +1.2 853,414 - DZA65_RS04045 0.67 +0.2 853,435 - DZA65_RS04045 0.69 +0.1 853,435 - DZA65_RS04045 0.69 -0.5 853,435 - DZA65_RS04045 0.69 -0.1 853,482 - DZA65_RS04045 0.74 +0.6 853,482 - DZA65_RS04045 0.74 -0.1 853,482 - DZA65_RS04045 0.74 -1.8 853,482 - DZA65_RS04045 0.74 -2.2 853,482 - DZA65_RS04045 0.74 -1.0 853,496 - DZA65_RS04045 0.76 +0.6 853,603 - DZA65_RS04045 0.87 -0.2 853,603 - DZA65_RS04045 0.87 +0.5 853,603 - DZA65_RS04045 0.87 +0.5 853,603 - DZA65_RS04045 0.87 -0.0 853,603 - DZA65_RS04045 0.87 -1.4 853,683 - +0.2 853,683 - -0.7 853,683 - +0.7 853,745 - -0.7 853,748 - -0.1 853,748 - +0.1 853,748 - +0.0 853,748 - -1.5 853,748 - +0.9 853,748 - +0.1 853,791 - -0.4 853,791 - +0.3 853,791 - +1.3 853,791 - -0.4 853,791 - -0.8 853,791 - +0.3 853,828 - DZA65_RS04050 0.12 +0.5 853,864 - DZA65_RS04050 0.16 -0.2 853,864 - DZA65_RS04050 0.16 +0.0 853,864 - DZA65_RS04050 0.16 -0.4 853,913 - DZA65_RS04050 0.22 -0.0 854,029 - DZA65_RS04050 0.36 -0.4 854,029 - DZA65_RS04050 0.36 +0.0 854,029 - DZA65_RS04050 0.36 +0.3 854,029 - DZA65_RS04050 0.36 -0.2 854,029 - DZA65_RS04050 0.36 -0.3 854,029 - DZA65_RS04050 0.36 +0.6 854,128 - DZA65_RS04050 0.48 +1.3 854,154 - DZA65_RS04050 0.51 +0.3 854,220 - DZA65_RS04050 0.59 +1.3 854,302 + DZA65_RS04050 0.69 +0.6 854,314 + DZA65_RS04050 0.71 +0.7 854,315 - DZA65_RS04050 0.71 -2.0 854,315 - DZA65_RS04050 0.71 +0.4 854,315 - DZA65_RS04050 0.71 -1.7 854,348 - DZA65_RS04050 0.75 +0.6 854,348 - DZA65_RS04050 0.75 +2.0 854,348 - DZA65_RS04050 0.75 +0.4 854,348 - DZA65_RS04050 0.75 -1.7 854,352 - DZA65_RS04050 0.75 +1.3 854,394 + DZA65_RS04050 0.80 +0.5 854,395 - DZA65_RS04050 0.80 +0.3 854,505 + +0.2 854,505 + -0.2 854,505 + -0.4 854,505 + -1.2 854,505 + -0.5 854,505 + -0.8 854,506 - +1.1 854,506 - -1.0 854,506 - -1.5 854,506 - +0.1 854,506 - -0.1 854,506 - -0.2 854,522 + -1.2 854,523 - -1.7 854,523 - +0.3 854,523 - -1.5 854,523 - -0.1 854,524 + -0.1 854,524 + +0.3 854,525 - -0.4 854,525 - -2.1 854,525 - -1.0 854,525 - +1.0 854,525 - +0.0 854,525 - +0.9 854,525 - -2.0 854,525 - +0.2 854,525 - +0.1 854,525 - -0.9 854,525 - -1.2 854,525 - +0.4 854,525 - +0.2 854,525 - +1.3 854,525 - -0.4 854,525 - +0.0 854,525 - +1.1 854,525 - -0.4 854,525 - -0.6 854,535 - -0.6 854,535 - -1.2 854,564 + +1.1 854,653 + -1.7 854,653 + +1.3 854,653 + +0.1 854,653 + +0.5 854,653 + +0.2 854,653 + -0.5 854,653 + +0.1 854,654 - +0.0 854,669 + +0.5 854,669 + -0.4 854,669 + -1.7 854,670 - -0.4 854,670 - +0.5 854,670 - -0.4 854,680 - +0.3 854,710 + +0.0 854,711 - -0.0 854,731 + -0.7 854,731 + +0.3 854,743 + -0.4 854,743 + -0.7 854,808 + DZA65_RS04055 0.12 -1.2 854,808 + DZA65_RS04055 0.12 -0.2 854,809 - DZA65_RS04055 0.12 -1.2 854,809 - DZA65_RS04055 0.12 -0.6 854,817 - DZA65_RS04055 0.13 +0.8 854,817 - +2.3 854,817 - DZA65_RS04055 0.13 -0.1 854,840 + DZA65_RS04055 0.14 -0.4 854,840 + DZA65_RS04055 0.14 +0.2 854,873 - DZA65_RS04055 0.16 -1.2 854,917 + DZA65_RS04055 0.18 +0.5 854,917 + DZA65_RS04055 0.18 +0.9 854,918 - DZA65_RS04055 0.18 -0.1 855,013 + DZA65_RS04055 0.22 -0.1 855,014 - DZA65_RS04055 0.22 -0.5 855,048 - DZA65_RS04055 0.24 +1.3 855,048 - DZA65_RS04055 0.24 -1.2 855,048 - DZA65_RS04055 0.24 -0.7 855,101 + DZA65_RS04055 0.27 -0.3 855,102 - DZA65_RS04055 0.27 +0.2 855,124 + DZA65_RS04055 0.28 -0.5 855,141 + +1.3 855,188 + DZA65_RS04055 0.31 +0.6 855,189 - DZA65_RS04055 0.31 -0.7 855,189 - DZA65_RS04055 0.31 +0.5 855,255 + DZA65_RS04055 0.34 -0.5 855,255 + DZA65_RS04055 0.34 +0.3 855,255 + DZA65_RS04055 0.34 -2.1 855,256 - -0.2 855,256 - DZA65_RS04055 0.34 -0.1 855,256 - DZA65_RS04055 0.34 -1.4 855,256 - DZA65_RS04055 0.34 -2.0 855,299 - DZA65_RS04055 0.36 +0.2 855,554 + DZA65_RS04055 0.49 -0.7 855,555 - DZA65_RS04055 0.49 +1.1 855,555 - DZA65_RS04055 0.49 -1.2
Or see this region's nucleotide sequence