Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04030

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS04015 and DZA65_RS04020 are separated by 32 nucleotidesDZA65_RS04020 and DZA65_RS04025 are separated by 84 nucleotidesDZA65_RS04025 and DZA65_RS04030 are separated by 19 nucleotidesDZA65_RS04030 and DZA65_RS04035 are separated by 71 nucleotidesDZA65_RS04035 and DZA65_RS04040 overlap by 1 nucleotidesDZA65_RS04040 and DZA65_RS04045 overlap by 4 nucleotides DZA65_RS04015: DZA65_RS04015 - hypothetical protein, at 850,751 to 850,972 _RS04015 DZA65_RS04020: DZA65_RS04020 - phage regulatory CII family protein, at 851,005 to 851,514 _RS04020 DZA65_RS04025: DZA65_RS04025 - hypothetical protein, at 851,599 to 851,895 _RS04025 DZA65_RS04030: DZA65_RS04030 - hypothetical protein, at 851,915 to 852,244 _RS04030 DZA65_RS04035: DZA65_RS04035 - DUF2732 domain-containing protein, at 852,316 to 852,546 _RS04035 DZA65_RS04040: DZA65_RS04040 - hypothetical protein, at 852,546 to 852,776 _RS04040 DZA65_RS04045: DZA65_RS04045 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 852,773 to 853,729 _RS04045 Position (kb) 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2at 851.026 kb on - strandat 851.288 kb on - strand, within DZA65_RS04020at 851.288 kb on - strand, within DZA65_RS04020at 851.288 kb on - strand, within DZA65_RS04020at 851.288 kb on - strand, within DZA65_RS04020at 851.288 kb on - strand, within DZA65_RS04020at 851.350 kb on - strand, within DZA65_RS04020at 851.350 kb on - strand, within DZA65_RS04020at 851.350 kb on - strand, within DZA65_RS04020at 851.567 kb on - strandat 851.620 kb on - strandat 851.620 kb on - strandat 851.643 kb on - strand, within DZA65_RS04025at 851.643 kb on - strand, within DZA65_RS04025at 851.648 kb on + strandat 851.681 kb on + strand, within DZA65_RS04025at 851.726 kb on - strand, within DZA65_RS04025at 851.736 kb on + strand, within DZA65_RS04025at 851.776 kb on + strand, within DZA65_RS04025at 851.777 kb on - strand, within DZA65_RS04025at 851.777 kb on - strand, within DZA65_RS04025at 851.777 kb on - strand, within DZA65_RS04025at 851.777 kb on - strand, within DZA65_RS04025at 851.779 kb on + strand, within DZA65_RS04025at 851.780 kb on - strand, within DZA65_RS04025at 851.780 kb on - strand, within DZA65_RS04025at 851.806 kb on - strand, within DZA65_RS04025at 851.894 kb on - strandat 851.894 kb on - strandat 851.901 kb on - strandat 851.901 kb on - strandat 851.914 kb on + strandat 851.914 kb on + strandat 851.914 kb on + strandat 851.914 kb on + strandat 851.914 kb on + strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.915 kb on - strandat 851.946 kb on + strandat 851.971 kb on + strand, within DZA65_RS04030at 852.031 kb on + strand, within DZA65_RS04030at 852.078 kb on - strand, within DZA65_RS04030at 852.078 kb on - strand, within DZA65_RS04030at 852.131 kb on - strand, within DZA65_RS04030at 852.131 kb on - strand, within DZA65_RS04030at 852.146 kb on - strand, within DZA65_RS04030at 852.197 kb on - strand, within DZA65_RS04030at 852.243 kb on - strandat 852.254 kb on - strandat 852.254 kb on - strandat 852.264 kb on - strandat 852.264 kb on - strandat 852.264 kb on - strandat 852.292 kb on - strandat 852.292 kb on - strandat 852.295 kb on - strandat 852.295 kb on - strandat 852.403 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.498 kb on - strand, within DZA65_RS04035at 852.659 kb on - strand, within DZA65_RS04040at 852.659 kb on - strand, within DZA65_RS04040at 852.659 kb on - strand, within DZA65_RS04040at 852.701 kb on - strand, within DZA65_RS04040at 852.773 kb on - strandat 852.773 kb on - strandat 852.847 kb on - strandat 852.920 kb on + strand, within DZA65_RS04045at 852.921 kb on - strand, within DZA65_RS04045at 852.921 kb on - strand, within DZA65_RS04045at 852.959 kb on + strand, within DZA65_RS04045at 853.028 kb on - strand, within DZA65_RS04045at 853.040 kb on + strand, within DZA65_RS04045at 853.041 kb on - strand, within DZA65_RS04045at 853.041 kb on - strand, within DZA65_RS04045at 853.043 kb on + strand, within DZA65_RS04045at 853.059 kb on + strand, within DZA65_RS04045at 853.059 kb on + strand, within DZA65_RS04045at 853.059 kb on + strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.060 kb on - strand, within DZA65_RS04045at 853.110 kb on - strand, within DZA65_RS04045at 853.146 kb on - strand, within DZA65_RS04045at 853.146 kb on - strand, within DZA65_RS04045at 853.166 kb on - strand, within DZA65_RS04045at 853.197 kb on - strand, within DZA65_RS04045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
851,026 - +0.0
851,288 - DZA65_RS04020 0.55 +1.3
851,288 - DZA65_RS04020 0.55 +0.1
851,288 - DZA65_RS04020 0.55 +0.3
851,288 - DZA65_RS04020 0.55 +0.9
851,288 - DZA65_RS04020 0.55 +1.1
851,350 - DZA65_RS04020 0.68 -0.6
851,350 - DZA65_RS04020 0.68 +0.4
851,350 - DZA65_RS04020 0.68 -2.0
851,567 - -0.1
851,620 - -1.2
851,620 - +0.6
851,643 - DZA65_RS04025 0.15 +0.6
851,643 - DZA65_RS04025 0.15 -0.5
851,648 + -0.7
851,681 + DZA65_RS04025 0.28 -2.1
851,726 - DZA65_RS04025 0.43 -0.4
851,736 + DZA65_RS04025 0.46 -0.2
851,776 + DZA65_RS04025 0.60 -0.3
851,777 - DZA65_RS04025 0.60 -0.4
851,777 - DZA65_RS04025 0.60 -0.2
851,777 - DZA65_RS04025 0.60 +0.5
851,777 - DZA65_RS04025 0.60 +0.1
851,779 + DZA65_RS04025 0.61 +0.3
851,780 - DZA65_RS04025 0.61 -0.7
851,780 - DZA65_RS04025 0.61 -1.4
851,806 - DZA65_RS04025 0.70 -0.5
851,894 - -0.7
851,894 - -0.5
851,901 - +1.0
851,901 - +0.9
851,914 + -0.4
851,914 + -1.4
851,914 + -0.2
851,914 + -1.0
851,914 + +0.5
851,915 - -1.5
851,915 - -0.7
851,915 - -0.1
851,915 - +1.9
851,915 - -1.4
851,915 - -0.9
851,915 - -0.5
851,915 - +1.1
851,946 + +0.2
851,971 + DZA65_RS04030 0.17 -1.4
852,031 + DZA65_RS04030 0.35 -0.7
852,078 - DZA65_RS04030 0.49 +0.1
852,078 - DZA65_RS04030 0.49 -0.6
852,131 - DZA65_RS04030 0.65 -1.0
852,131 - DZA65_RS04030 0.65 -1.0
852,146 - DZA65_RS04030 0.70 -0.8
852,197 - DZA65_RS04030 0.85 +0.2
852,243 - -1.1
852,254 - +0.2
852,254 - +0.3
852,264 - +1.0
852,264 - -0.0
852,264 - +1.6
852,292 - +0.3
852,292 - +2.1
852,295 - +1.3
852,295 - +0.9
852,403 - DZA65_RS04035 0.38 -1.0
852,498 - DZA65_RS04035 0.79 -0.7
852,498 - DZA65_RS04035 0.79 +0.8
852,498 - DZA65_RS04035 0.79 -0.3
852,498 - DZA65_RS04035 0.79 +0.9
852,498 - DZA65_RS04035 0.79 -1.7
852,498 - DZA65_RS04035 0.79 -0.3
852,659 - DZA65_RS04040 0.49 +0.3
852,659 - DZA65_RS04040 0.49 -0.6
852,659 - DZA65_RS04040 0.49 +0.8
852,701 - DZA65_RS04040 0.67 -1.6
852,773 - -0.1
852,773 - -0.1
852,847 - -0.4
852,920 + DZA65_RS04045 0.15 -0.1
852,921 - DZA65_RS04045 0.15 +0.6
852,921 - DZA65_RS04045 0.15 +0.7
852,959 + DZA65_RS04045 0.19 +0.2
853,028 - DZA65_RS04045 0.27 -0.1
853,040 + DZA65_RS04045 0.28 +0.3
853,041 - DZA65_RS04045 0.28 -0.5
853,041 - DZA65_RS04045 0.28 -0.5
853,043 + DZA65_RS04045 0.28 +0.3
853,059 + DZA65_RS04045 0.30 -0.5
853,059 + DZA65_RS04045 0.30 +0.0
853,059 + DZA65_RS04045 0.30 +2.6
853,060 - DZA65_RS04045 0.30 +0.1
853,060 - DZA65_RS04045 0.30 -1.2
853,060 - DZA65_RS04045 0.30 -0.8
853,060 - DZA65_RS04045 0.30 +0.9
853,060 - DZA65_RS04045 0.30 -0.4
853,060 - DZA65_RS04045 0.30 -0.2
853,110 - DZA65_RS04045 0.35 +1.0
853,146 - DZA65_RS04045 0.39 +0.9
853,146 - DZA65_RS04045 0.39 +1.1
853,166 - DZA65_RS04045 0.41 +0.3
853,197 - DZA65_RS04045 0.44 +1.2

Or see this region's nucleotide sequence