Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04010 and DZA65_RS04015 are separated by 129 nucleotides DZA65_RS04015 and DZA65_RS04020 are separated by 32 nucleotides DZA65_RS04020 and DZA65_RS04025 are separated by 84 nucleotides DZA65_RS04025 and DZA65_RS04030 are separated by 19 nucleotides DZA65_RS04030 and DZA65_RS04035 are separated by 71 nucleotides
DZA65_RS04010: DZA65_RS04010 - hypothetical protein, at 850,058 to 850,621
_RS04010
DZA65_RS04015: DZA65_RS04015 - hypothetical protein, at 850,751 to 850,972
_RS04015
DZA65_RS04020: DZA65_RS04020 - phage regulatory CII family protein, at 851,005 to 851,514
_RS04020
DZA65_RS04025: DZA65_RS04025 - hypothetical protein, at 851,599 to 851,895
_RS04025
DZA65_RS04030: DZA65_RS04030 - hypothetical protein, at 851,915 to 852,244
_RS04030
DZA65_RS04035: DZA65_RS04035 - DUF2732 domain-containing protein, at 852,316 to 852,546
_RS04035
Position (kb) 851
852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 850.013 kb on + strand at 850.013 kb on + strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.014 kb on - strand at 850.060 kb on - strand at 850.060 kb on - strand at 850.062 kb on - strand at 850.750 kb on + strand at 850.750 kb on + strand at 850.751 kb on - strand at 850.765 kb on - strand at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.805 kb on + strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.806 kb on - strand, within DZA65_RS04015 at 850.829 kb on - strand, within DZA65_RS04015 at 850.867 kb on - strand, within DZA65_RS04015 at 850.892 kb on - strand, within DZA65_RS04015 at 851.026 kb on - strand at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.288 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.350 kb on - strand, within DZA65_RS04020 at 851.567 kb on - strand at 851.620 kb on - strand at 851.620 kb on - strand at 851.643 kb on - strand, within DZA65_RS04025 at 851.643 kb on - strand, within DZA65_RS04025 at 851.648 kb on + strand at 851.681 kb on + strand, within DZA65_RS04025 at 851.726 kb on - strand, within DZA65_RS04025 at 851.736 kb on + strand, within DZA65_RS04025 at 851.776 kb on + strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.779 kb on + strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.806 kb on - strand, within DZA65_RS04025 at 851.894 kb on - strand at 851.894 kb on - strand at 851.901 kb on - strand at 851.901 kb on - strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.946 kb on + strand at 851.971 kb on + strand, within DZA65_RS04030 at 852.031 kb on + strand, within DZA65_RS04030 at 852.078 kb on - strand, within DZA65_RS04030 at 852.078 kb on - strand, within DZA65_RS04030 at 852.131 kb on - strand, within DZA65_RS04030 at 852.131 kb on - strand, within DZA65_RS04030 at 852.146 kb on - strand, within DZA65_RS04030 at 852.197 kb on - strand, within DZA65_RS04030 at 852.243 kb on - strand at 852.254 kb on - strand at 852.254 kb on - strand at 852.264 kb on - strand at 852.264 kb on - strand at 852.264 kb on - strand at 852.292 kb on - strand at 852.292 kb on - strand at 852.295 kb on - strand at 852.295 kb on - strand at 852.403 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 850,013 + -1.3 850,013 + +0.2 850,014 - -1.5 850,014 - -1.7 850,014 - +0.1 850,014 - -0.4 850,014 - -0.8 850,014 - -0.2 850,014 - -0.7 850,060 - +0.2 850,060 - +0.4 850,062 - -0.0 850,750 + -1.2 850,750 + -0.6 850,751 - +0.5 850,765 - -0.5 850,805 + DZA65_RS04015 0.24 -0.3 850,805 + DZA65_RS04015 0.24 +1.1 850,805 + DZA65_RS04015 0.24 +0.7 850,805 + DZA65_RS04015 0.24 -0.4 850,806 - DZA65_RS04015 0.25 +0.3 850,806 - DZA65_RS04015 0.25 -0.5 850,806 - DZA65_RS04015 0.25 -0.8 850,806 - DZA65_RS04015 0.25 -0.1 850,806 - DZA65_RS04015 0.25 -0.1 850,829 - DZA65_RS04015 0.35 -1.4 850,867 - DZA65_RS04015 0.52 -0.3 850,892 - DZA65_RS04015 0.64 -1.6 851,026 - +0.0 851,288 - DZA65_RS04020 0.55 +1.3 851,288 - DZA65_RS04020 0.55 +0.1 851,288 - DZA65_RS04020 0.55 +0.3 851,288 - DZA65_RS04020 0.55 +0.9 851,288 - DZA65_RS04020 0.55 +1.1 851,350 - DZA65_RS04020 0.68 -0.6 851,350 - DZA65_RS04020 0.68 +0.4 851,350 - DZA65_RS04020 0.68 -2.0 851,567 - -0.1 851,620 - -1.2 851,620 - +0.6 851,643 - DZA65_RS04025 0.15 +0.6 851,643 - DZA65_RS04025 0.15 -0.5 851,648 + -0.7 851,681 + DZA65_RS04025 0.28 -2.1 851,726 - DZA65_RS04025 0.43 -0.4 851,736 + DZA65_RS04025 0.46 -0.2 851,776 + DZA65_RS04025 0.60 -0.3 851,777 - DZA65_RS04025 0.60 -0.4 851,777 - DZA65_RS04025 0.60 -0.2 851,777 - DZA65_RS04025 0.60 +0.5 851,777 - DZA65_RS04025 0.60 +0.1 851,779 + DZA65_RS04025 0.61 +0.3 851,780 - DZA65_RS04025 0.61 -0.7 851,780 - DZA65_RS04025 0.61 -1.4 851,806 - DZA65_RS04025 0.70 -0.5 851,894 - -0.7 851,894 - -0.5 851,901 - +1.0 851,901 - +0.9 851,914 + -0.4 851,914 + -1.4 851,914 + -0.2 851,914 + -1.0 851,914 + +0.5 851,915 - -1.5 851,915 - -0.7 851,915 - -0.1 851,915 - +1.9 851,915 - -1.4 851,915 - -0.9 851,915 - -0.5 851,915 - +1.1 851,946 + +0.2 851,971 + DZA65_RS04030 0.17 -1.4 852,031 + DZA65_RS04030 0.35 -0.7 852,078 - DZA65_RS04030 0.49 +0.1 852,078 - DZA65_RS04030 0.49 -0.6 852,131 - DZA65_RS04030 0.65 -1.0 852,131 - DZA65_RS04030 0.65 -1.0 852,146 - DZA65_RS04030 0.70 -0.8 852,197 - DZA65_RS04030 0.85 +0.2 852,243 - -1.1 852,254 - +0.2 852,254 - +0.3 852,264 - +1.0 852,264 - -0.0 852,264 - +1.6 852,292 - +0.3 852,292 - +2.1 852,295 - +1.3 852,295 - +0.9 852,403 - DZA65_RS04035 0.38 -1.0 852,498 - DZA65_RS04035 0.79 -0.7 852,498 - DZA65_RS04035 0.79 +0.8 852,498 - DZA65_RS04035 0.79 -0.3 852,498 - DZA65_RS04035 0.79 +0.9 852,498 - DZA65_RS04035 0.79 -1.7 852,498 - DZA65_RS04035 0.79 -0.3
Or see this region's nucleotide sequence