Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03825 and DZA65_RS03835 are separated by 146 nucleotides DZA65_RS03835 and DZA65_RS03840 are separated by 14 nucleotides DZA65_RS03840 and DZA65_RS03845 are separated by 56 nucleotides
DZA65_RS03825: DZA65_RS03825 - DinI family protein, at 812,940 to 813,179
_RS03825
DZA65_RS03835: DZA65_RS03835 - VOC family protein, at 813,326 to 813,715
_RS03835
DZA65_RS03840: DZA65_RS03840 - hypothetical protein, at 813,730 to 814,014
_RS03840
DZA65_RS03845: DZA65_RS03845 - D-alanine--D-alanine ligase, at 814,071 to 815,171
_RS03845
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.793 kb on + strand at 812.833 kb on + strand at 812.834 kb on - strand at 812.941 kb on + strand at 812.973 kb on - strand, within DZA65_RS03825 at 812.973 kb on - strand, within DZA65_RS03825 at 813.008 kb on + strand, within DZA65_RS03825 at 813.008 kb on + strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.155 kb on + strand, within DZA65_RS03825 at 813.155 kb on + strand, within DZA65_RS03825 at 813.156 kb on - strand at 813.156 kb on - strand at 813.156 kb on - strand at 813.156 kb on - strand at 813.157 kb on - strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.172 kb on - strand at 813.172 kb on - strand at 813.172 kb on - strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.215 kb on - strand at 813.249 kb on + strand at 813.277 kb on + strand at 813.277 kb on + strand at 813.278 kb on - strand at 813.278 kb on - strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.303 kb on + strand at 813.331 kb on - strand at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.376 kb on - strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.405 kb on + strand, within DZA65_RS03835 at 813.442 kb on + strand, within DZA65_RS03835 at 813.442 kb on + strand at 813.442 kb on + strand, within DZA65_RS03835 at 813.443 kb on - strand, within DZA65_RS03835 at 813.443 kb on - strand, within DZA65_RS03835 at 813.482 kb on - strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.494 kb on - strand, within DZA65_RS03835 at 813.494 kb on - strand, within DZA65_RS03835 at 813.531 kb on + strand, within DZA65_RS03835 at 813.531 kb on + strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.542 kb on + strand, within DZA65_RS03835 at 813.542 kb on + strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.588 kb on + strand, within DZA65_RS03835 at 813.588 kb on + strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.606 kb on + strand, within DZA65_RS03835 at 813.619 kb on + strand, within DZA65_RS03835 at 813.619 kb on + strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.711 kb on + strand at 813.714 kb on - strand at 813.733 kb on + strand at 813.735 kb on + strand at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.949 kb on + strand, within DZA65_RS03840 at 813.949 kb on + strand, within DZA65_RS03840 at 813.950 kb on - strand, within DZA65_RS03840 at 813.950 kb on - strand, within DZA65_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 812,793 + +1.1 812,833 + +0.0 812,834 - -0.8 812,941 + -1.0 812,973 - DZA65_RS03825 0.14 -0.6 812,973 - DZA65_RS03825 0.14 -0.0 813,008 + DZA65_RS03825 0.28 -0.0 813,008 + DZA65_RS03825 0.28 +0.5 813,009 - DZA65_RS03825 0.29 +0.4 813,009 - DZA65_RS03825 0.29 -0.6 813,009 - DZA65_RS03825 0.29 -0.8 813,009 - DZA65_RS03825 0.29 -0.1 813,155 + DZA65_RS03825 0.90 +0.0 813,155 + DZA65_RS03825 0.90 +0.5 813,156 - +0.1 813,156 - -0.2 813,156 - -0.6 813,156 - +0.1 813,157 - -0.7 813,171 + -1.2 813,171 + +1.4 813,171 + +0.0 813,171 + +0.4 813,172 - -0.2 813,172 - +0.2 813,172 - -0.5 813,175 + +0.2 813,175 + -0.6 813,175 + -0.2 813,175 + +0.1 813,175 + -3.2 813,176 - -1.1 813,176 - -0.1 813,176 - -0.9 813,176 - +0.5 813,176 - +0.7 813,176 - -0.8 813,176 - +0.7 813,176 - +0.7 813,215 - -0.1 813,249 + -0.7 813,277 + -1.6 813,277 + -0.8 813,278 - -0.1 813,278 - -0.5 813,279 + +0.1 813,279 + +0.2 813,279 + -0.4 813,279 + -0.3 813,279 + +0.5 813,279 + -1.3 813,279 + +0.1 813,279 + +0.0 813,279 + +0.4 813,279 + -0.2 813,279 + +0.4 813,279 + -0.8 813,279 + +0.0 813,279 + -2.0 813,279 + +0.1 813,279 + +0.2 813,279 + +0.4 813,279 + +1.4 813,279 + +1.4 813,279 + +0.9 813,280 - -1.1 813,280 - -0.1 813,280 - +0.3 813,280 - -0.6 813,280 - +0.1 813,280 - -2.6 813,280 - -0.8 813,280 - -1.6 813,280 - -0.4 813,280 - +0.4 813,280 - +0.8 813,280 - -1.0 813,280 - +0.4 813,280 - -0.7 813,280 - -0.6 813,280 - +0.5 813,280 - -0.3 813,280 - -1.0 813,280 - -1.0 813,280 - -1.0 813,280 - +0.2 813,280 - -0.1 813,280 - +0.8 813,281 + -1.1 813,281 + +1.4 813,281 + -1.6 813,281 + -2.8 813,281 + -0.6 813,281 + +0.7 813,281 + -1.0 813,281 + -0.6 813,281 + +0.9 813,281 + +1.0 813,281 + -0.6 813,281 + +1.7 813,281 + -0.2 813,281 + +0.8 813,281 + +1.0 813,281 + -0.8 813,281 + +0.4 813,281 + +2.4 813,282 - -1.6 813,282 - +0.6 813,282 - +1.0 813,282 - -1.0 813,282 - +0.5 813,282 - +0.1 813,282 - -0.6 813,282 - +0.4 813,282 - -0.8 813,282 - +0.4 813,282 - +0.5 813,282 - +0.4 813,282 - +1.6 813,282 - -0.5 813,303 + -0.2 813,331 - -0.4 813,375 + DZA65_RS03835 0.13 -0.4 813,375 + DZA65_RS03835 0.13 +0.4 813,375 + DZA65_RS03835 0.13 -2.1 813,375 + DZA65_RS03835 0.13 -0.1 813,376 - DZA65_RS03835 0.13 -0.4 813,377 + DZA65_RS03835 0.13 -0.6 813,377 + DZA65_RS03835 0.13 -1.0 813,377 + DZA65_RS03835 0.13 -0.6 813,377 + DZA65_RS03835 0.13 +0.9 813,377 + DZA65_RS03835 0.13 -0.6 813,377 + DZA65_RS03835 0.13 -0.1 813,377 + DZA65_RS03835 0.13 +0.9 813,377 + DZA65_RS03835 0.13 +0.5 813,377 + DZA65_RS03835 0.13 +0.8 813,377 + DZA65_RS03835 0.13 -1.0 813,377 + DZA65_RS03835 0.13 +0.2 813,378 - DZA65_RS03835 0.13 -0.2 813,378 - DZA65_RS03835 0.13 +1.4 813,378 - DZA65_RS03835 0.13 -1.1 813,378 - DZA65_RS03835 0.13 +0.6 813,378 - DZA65_RS03835 0.13 -0.8 813,378 - DZA65_RS03835 0.13 +0.4 813,378 - DZA65_RS03835 0.13 +0.1 813,378 - DZA65_RS03835 0.13 +1.4 813,378 - DZA65_RS03835 0.13 -0.1 813,378 - DZA65_RS03835 0.13 +1.0 813,378 - DZA65_RS03835 0.13 +0.7 813,378 - DZA65_RS03835 0.13 -0.4 813,378 - DZA65_RS03835 0.13 -0.3 813,378 - DZA65_RS03835 0.13 -1.8 813,378 - DZA65_RS03835 0.13 +0.7 813,405 + DZA65_RS03835 0.20 -0.8 813,442 + DZA65_RS03835 0.30 +0.6 813,442 + +2.7 813,442 + DZA65_RS03835 0.30 -0.3 813,443 - DZA65_RS03835 0.30 -0.2 813,443 - DZA65_RS03835 0.30 -0.4 813,482 - DZA65_RS03835 0.40 -0.4 813,493 + DZA65_RS03835 0.43 -1.2 813,493 + DZA65_RS03835 0.43 -0.5 813,493 + DZA65_RS03835 0.43 +0.2 813,493 + +1.6 813,493 + DZA65_RS03835 0.43 -0.8 813,493 + DZA65_RS03835 0.43 +0.9 813,494 - DZA65_RS03835 0.43 +0.7 813,494 - DZA65_RS03835 0.43 +0.6 813,531 + DZA65_RS03835 0.53 +0.6 813,531 + DZA65_RS03835 0.53 -1.2 813,532 - DZA65_RS03835 0.53 -1.1 813,532 - DZA65_RS03835 0.53 +0.2 813,532 - DZA65_RS03835 0.53 -0.5 813,532 - DZA65_RS03835 0.53 -0.4 813,542 + DZA65_RS03835 0.55 -0.8 813,542 + DZA65_RS03835 0.55 +0.5 813,543 - DZA65_RS03835 0.56 +0.9 813,543 - DZA65_RS03835 0.56 +0.0 813,543 - DZA65_RS03835 0.56 -0.6 813,543 - DZA65_RS03835 0.56 -0.5 813,588 + DZA65_RS03835 0.67 -0.4 813,588 + DZA65_RS03835 0.67 +0.4 813,589 - DZA65_RS03835 0.67 -0.5 813,589 - DZA65_RS03835 0.67 +0.3 813,589 - DZA65_RS03835 0.67 -0.1 813,606 + DZA65_RS03835 0.72 +0.1 813,619 + DZA65_RS03835 0.75 +0.1 813,619 + DZA65_RS03835 0.75 -1.2 813,620 - DZA65_RS03835 0.75 +0.3 813,620 - DZA65_RS03835 0.75 -1.1 813,620 - DZA65_RS03835 0.75 +1.4 813,620 - DZA65_RS03835 0.75 -1.5 813,620 - DZA65_RS03835 0.75 -0.7 813,711 + +0.1 813,714 - -0.6 813,733 + +0.8 813,735 + -0.5 813,830 + DZA65_RS03840 0.35 +0.5 813,830 + DZA65_RS03840 0.35 +0.7 813,830 + DZA65_RS03840 0.35 -0.5 813,830 + DZA65_RS03840 0.35 -1.0 813,830 + DZA65_RS03840 0.35 -1.9 813,830 + DZA65_RS03840 0.35 -0.2 813,830 + DZA65_RS03840 0.35 -0.4 813,831 - DZA65_RS03840 0.35 -1.6 813,831 - DZA65_RS03840 0.35 -0.3 813,831 - DZA65_RS03840 0.35 -0.4 813,831 - DZA65_RS03840 0.35 +0.2 813,831 - DZA65_RS03840 0.35 -0.2 813,831 - DZA65_RS03840 0.35 -0.5 813,831 - DZA65_RS03840 0.35 -1.1 813,831 - DZA65_RS03840 0.35 -0.1 813,949 + DZA65_RS03840 0.77 +0.5 813,949 + DZA65_RS03840 0.77 -0.6 813,950 - DZA65_RS03840 0.77 -1.3 813,950 - DZA65_RS03840 0.77 +1.6
Or see this region's nucleotide sequence