Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03770 and DZA65_RS03775 overlap by 4 nucleotides DZA65_RS03775 and DZA65_RS03780 are separated by 198 nucleotides
DZA65_RS03770: DZA65_RS03770 - HlyD family secretion protein, at 797,674 to 798,831
_RS03770
DZA65_RS03775: DZA65_RS03775 - MarR family transcriptional regulator, at 798,828 to 799,283
_RS03775
DZA65_RS03780: DZA65_RS03780 - PLP-dependent aminotransferase family protein, at 799,482 to 800,966
_RS03780
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 797.928 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand at 798.363 kb on + strand, within DZA65_RS03770 at 798.364 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.565 kb on + strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.774 kb on + strand at 798.775 kb on - strand at 798.790 kb on + strand at 798.790 kb on + strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.826 kb on - strand at 798.826 kb on - strand at 798.899 kb on + strand, within DZA65_RS03775 at 798.900 kb on - strand, within DZA65_RS03775 at 798.966 kb on + strand, within DZA65_RS03775 at 798.967 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand at 799.183 kb on + strand, within DZA65_RS03775 at 799.300 kb on + strand at 799.300 kb on + strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.389 kb on + strand at 799.389 kb on + strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.407 kb on - strand at 799.407 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.447 kb on - strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.497 kb on + strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.574 kb on + strand at 799.574 kb on + strand at 799.575 kb on - strand at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.804 kb on + strand, within DZA65_RS03780 at 799.869 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.930 kb on - strand, within DZA65_RS03780 at 799.950 kb on + strand, within DZA65_RS03780 at 799.951 kb on - strand, within DZA65_RS03780 at 799.951 kb on - strand, within DZA65_RS03780 at 799.965 kb on + strand, within DZA65_RS03780 at 799.985 kb on + strand, within DZA65_RS03780 at 799.985 kb on + strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 800.002 kb on + strand, within DZA65_RS03780 at 800.003 kb on - strand, within DZA65_RS03780 at 800.003 kb on - strand, within DZA65_RS03780 at 800.077 kb on + strand, within DZA65_RS03780 at 800.077 kb on + strand, within DZA65_RS03780 at 800.121 kb on + strand, within DZA65_RS03780 at 800.121 kb on + strand, within DZA65_RS03780 at 800.122 kb on - strand, within DZA65_RS03780 at 800.149 kb on - strand, within DZA65_RS03780 at 800.168 kb on - strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.251 kb on - strand, within DZA65_RS03780 at 800.263 kb on - strand at 800.263 kb on - strand, within DZA65_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 797,928 + DZA65_RS03770 0.22 +0.4 798,041 + DZA65_RS03770 0.32 -1.3 798,041 + DZA65_RS03770 0.32 +0.4 798,041 + DZA65_RS03770 0.32 -0.9 798,041 + DZA65_RS03770 0.32 -0.6 798,042 - DZA65_RS03770 0.32 +0.8 798,042 - DZA65_RS03770 0.32 -0.1 798,042 - +0.8 798,363 + DZA65_RS03770 0.59 +0.6 798,364 - DZA65_RS03770 0.60 -0.6 798,492 - DZA65_RS03770 0.71 -0.2 798,492 - DZA65_RS03770 0.71 +0.5 798,565 + DZA65_RS03770 0.77 +0.0 798,566 - DZA65_RS03770 0.77 +0.4 798,566 - DZA65_RS03770 0.77 -0.6 798,774 + +0.5 798,775 - +0.4 798,790 + -1.4 798,790 + +0.4 798,791 - -0.8 798,791 - +0.1 798,791 - -1.0 798,826 - -0.0 798,826 - +0.6 798,899 + DZA65_RS03775 0.16 +1.4 798,900 - DZA65_RS03775 0.16 -1.0 798,966 + DZA65_RS03775 0.30 -0.3 798,967 - DZA65_RS03775 0.30 +0.4 799,167 - DZA65_RS03775 0.74 +0.6 799,167 - -0.4 799,183 + DZA65_RS03775 0.78 +1.8 799,300 + +0.5 799,300 + -0.5 799,301 - +0.9 799,301 - +0.2 799,301 - -2.0 799,301 - -1.2 799,389 + +0.3 799,389 + +0.4 799,390 - -0.6 799,390 - -0.2 799,390 - -0.8 799,406 + +0.5 799,406 + +1.9 799,406 + +0.1 799,406 + +1.4 799,406 + -0.1 799,407 - -1.0 799,407 - -0.7 799,419 - +0.1 799,419 - +0.2 799,419 - -0.6 799,419 - +0.4 799,446 + -0.8 799,446 + +0.5 799,446 + -0.4 799,446 + +1.4 799,447 - +1.0 799,487 + -0.3 799,487 + -1.4 799,487 + -0.3 799,487 + -2.0 799,487 + +0.3 799,487 + -0.6 799,488 - -0.8 799,488 - +1.4 799,488 - -0.2 799,488 - -1.6 799,488 - +0.4 799,488 - -1.0 799,488 - -0.3 799,488 - +0.5 799,488 - -0.8 799,497 + -0.1 799,498 - -1.4 799,498 - +0.5 799,498 - -0.2 799,542 - -0.5 799,542 - +0.4 799,542 - +0.2 799,574 + -0.5 799,574 + -0.2 799,575 - -0.3 799,644 + DZA65_RS03780 0.11 +0.5 799,644 + DZA65_RS03780 0.11 +0.0 799,644 + DZA65_RS03780 0.11 -0.8 799,645 - DZA65_RS03780 0.11 -0.5 799,645 - DZA65_RS03780 0.11 -0.9 799,645 - DZA65_RS03780 0.11 -0.4 799,645 - DZA65_RS03780 0.11 +0.8 799,683 - DZA65_RS03780 0.14 -0.2 799,683 - DZA65_RS03780 0.14 -0.1 799,711 - DZA65_RS03780 0.15 +0.1 799,711 - DZA65_RS03780 0.15 -0.7 799,804 + DZA65_RS03780 0.22 +0.9 799,869 + DZA65_RS03780 0.26 -1.8 799,929 + DZA65_RS03780 0.30 +1.0 799,929 + DZA65_RS03780 0.30 +1.6 799,929 + DZA65_RS03780 0.30 -1.0 799,930 - DZA65_RS03780 0.30 +0.7 799,950 + DZA65_RS03780 0.32 -0.9 799,951 - DZA65_RS03780 0.32 -0.4 799,951 - DZA65_RS03780 0.32 -0.6 799,965 + DZA65_RS03780 0.33 +0.2 799,985 + DZA65_RS03780 0.34 -0.2 799,985 + DZA65_RS03780 0.34 -0.0 799,986 - DZA65_RS03780 0.34 +0.4 799,986 - DZA65_RS03780 0.34 +0.4 799,986 - DZA65_RS03780 0.34 -0.1 800,002 + DZA65_RS03780 0.35 +0.6 800,003 - DZA65_RS03780 0.35 -1.4 800,003 - DZA65_RS03780 0.35 -1.2 800,077 + DZA65_RS03780 0.40 -1.0 800,077 + DZA65_RS03780 0.40 -0.3 800,121 + DZA65_RS03780 0.43 +0.6 800,121 + DZA65_RS03780 0.43 -1.3 800,122 - DZA65_RS03780 0.43 +0.5 800,149 - DZA65_RS03780 0.45 -0.2 800,168 - DZA65_RS03780 0.46 +0.2 800,188 + DZA65_RS03780 0.48 +0.4 800,188 + DZA65_RS03780 0.48 +1.4 800,188 + DZA65_RS03780 0.48 -0.3 800,188 + DZA65_RS03780 0.48 -0.0 800,188 + DZA65_RS03780 0.48 -0.3 800,188 + DZA65_RS03780 0.48 -0.2 800,188 + DZA65_RS03780 0.48 +0.6 800,188 + DZA65_RS03780 0.48 -0.2 800,188 + DZA65_RS03780 0.48 +0.4 800,188 + DZA65_RS03780 0.48 +0.9 800,188 + DZA65_RS03780 0.48 +0.8 800,189 - DZA65_RS03780 0.48 -0.8 800,189 - DZA65_RS03780 0.48 +1.2 800,189 - DZA65_RS03780 0.48 +0.2 800,189 - DZA65_RS03780 0.48 -0.8 800,189 - DZA65_RS03780 0.48 -0.2 800,189 - DZA65_RS03780 0.48 +0.4 800,189 - DZA65_RS03780 0.48 +0.5 800,189 - DZA65_RS03780 0.48 -1.1 800,189 - DZA65_RS03780 0.48 -1.0 800,189 - DZA65_RS03780 0.48 -2.5 800,189 - DZA65_RS03780 0.48 -1.3 800,189 - DZA65_RS03780 0.48 +0.4 800,189 - DZA65_RS03780 0.48 +0.9 800,210 + DZA65_RS03780 0.49 -0.1 800,210 + DZA65_RS03780 0.49 +0.5 800,210 + DZA65_RS03780 0.49 +0.0 800,210 + DZA65_RS03780 0.49 -0.1 800,211 - DZA65_RS03780 0.49 -0.3 800,211 - DZA65_RS03780 0.49 -2.0 800,211 - DZA65_RS03780 0.49 +0.1 800,211 - DZA65_RS03780 0.49 +0.3 800,211 - DZA65_RS03780 0.49 +0.8 800,211 - DZA65_RS03780 0.49 -0.4 800,211 - DZA65_RS03780 0.49 +0.8 800,211 - DZA65_RS03780 0.49 +0.1 800,211 - DZA65_RS03780 0.49 +0.4 800,251 - DZA65_RS03780 0.52 -0.4 800,263 - +0.4 800,263 - DZA65_RS03780 0.53 +0.4
Or see this region's nucleotide sequence