Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03495 and DZA65_RS03500 are separated by 166 nucleotides DZA65_RS03500 and DZA65_RS03505 are separated by 9 nucleotides
DZA65_RS03495: DZA65_RS03495 - single-stranded-DNA-specific exonuclease RecJ, at 737,736 to 739,466
_RS03495
DZA65_RS03500: DZA65_RS03500 - peptide chain release factor 2, at 739,633 to 740,731
_RS03500
DZA65_RS03505: DZA65_RS03505 - lysine--tRNA ligase, at 740,741 to 742,258
_RS03505
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.981 kb on - strand, within DZA65_RS03495 at 738.981 kb on - strand, within DZA65_RS03495 at 739.392 kb on + strand at 739.393 kb on - strand at 739.432 kb on + strand at 739.433 kb on - strand at 739.433 kb on - strand at 739.433 kb on - strand at 739.465 kb on - strand at 739.465 kb on - strand at 739.478 kb on + strand at 739.479 kb on - strand at 739.486 kb on - strand at 739.486 kb on - strand at 739.551 kb on + strand at 739.553 kb on + strand at 739.553 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 738,813 + DZA65_RS03495 0.62 -0.3 738,813 + DZA65_RS03495 0.62 -2.8 738,813 + DZA65_RS03495 0.62 -0.6 738,813 + DZA65_RS03495 0.62 -1.2 738,813 + DZA65_RS03495 0.62 +0.4 738,814 - DZA65_RS03495 0.62 +0.4 738,814 - DZA65_RS03495 0.62 +2.0 738,814 - DZA65_RS03495 0.62 -1.4 738,814 - DZA65_RS03495 0.62 -0.2 738,981 - DZA65_RS03495 0.72 -1.0 738,981 - DZA65_RS03495 0.72 -0.5 739,392 + -0.5 739,393 - -0.9 739,432 + -0.1 739,433 - -1.2 739,433 - -0.5 739,433 - -0.4 739,465 - +0.1 739,465 - -0.2 739,478 + -1.5 739,479 - +1.2 739,486 - +0.4 739,486 - +1.0 739,551 + +0.1 739,553 + +0.1 739,553 + +0.8 739,588 + +0.0 739,588 + -0.2 739,588 + +0.2 739,588 + -0.4 739,588 + -0.3 739,618 + -0.8 739,618 + -1.2 739,618 + +0.1 739,618 + -0.3
Or see this region's nucleotide sequence