Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03260

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03255 and DZA65_RS03260 are separated by 127 nucleotidesDZA65_RS03260 and DZA65_RS03265 are separated by 108 nucleotidesDZA65_RS03265 and DZA65_RS03270 are separated by 12 nucleotides DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725 _RS03255 DZA65_RS03260: DZA65_RS03260 - lipoprotein NlpI, at 691,853 to 692,737 _RS03260 DZA65_RS03265: DZA65_RS03265 - protein YrbN, at 692,846 to 692,905 _RS03265 DZA65_RS03270: DZA65_RS03270 - DEAD/DEAH family ATP-dependent RNA helicase, at 692,918 to 694,804 _RS03270 Position (kb) 691 692 693Strain fitness (log2 ratio) -2 -1 0 1 2at 690.921 kb on + strand, within DZA65_RS03255at 690.922 kb on - strand, within DZA65_RS03255at 691.028 kb on - strand, within DZA65_RS03255at 691.228 kb on - strand, within DZA65_RS03255at 691.670 kb on + strandat 691.671 kb on - strandat 691.723 kb on + strandat 691.724 kb on - strandat 691.724 kb on - strandat 691.724 kb on - strandat 691.724 kb on - strandat 691.724 kb on - strandat 691.724 kb on - strandat 691.726 kb on + strandat 691.752 kb on + strandat 691.753 kb on - strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.774 kb on + strandat 691.775 kb on - strandat 691.775 kb on - strandat 691.775 kb on - strandat 691.775 kb on - strandat 691.777 kb on + strandat 691.777 kb on + strandat 691.777 kb on + strandat 691.777 kb on + strandat 691.777 kb on + strandat 691.778 kb on - strandat 691.778 kb on - strandat 691.779 kb on + strandat 691.780 kb on - strandat 691.780 kb on - strandat 691.780 kb on - strandat 691.796 kb on + strandat 691.797 kb on - strandat 691.877 kb on + strandat 691.877 kb on + strandat 691.878 kb on - strandat 691.878 kb on - strandat 691.878 kb on - strandat 691.894 kb on + strandat 691.894 kb on + strandat 691.895 kb on - strandat 691.895 kb on - strandat 692.021 kb on - strandat 692.046 kb on + strand, within DZA65_RS03260at 692.046 kb on + strand, within DZA65_RS03260at 692.047 kb on - strand, within DZA65_RS03260at 692.047 kb on - strand, within DZA65_RS03260at 692.048 kb on + strand, within DZA65_RS03260at 692.049 kb on - strand, within DZA65_RS03260at 692.049 kb on - strand, within DZA65_RS03260at 692.066 kb on + strand, within DZA65_RS03260at 692.066 kb on + strand, within DZA65_RS03260at 692.066 kb on + strand, within DZA65_RS03260at 692.066 kb on + strand, within DZA65_RS03260at 692.066 kb on + strand, within DZA65_RS03260at 692.135 kb on - strand, within DZA65_RS03260at 692.153 kb on + strand, within DZA65_RS03260at 692.165 kb on + strand, within DZA65_RS03260at 692.244 kb on - strand, within DZA65_RS03260at 692.364 kb on - strand, within DZA65_RS03260at 692.421 kb on - strandat 692.506 kb on + strand, within DZA65_RS03260at 692.506 kb on + strand, within DZA65_RS03260at 692.508 kb on + strand, within DZA65_RS03260at 692.509 kb on - strand, within DZA65_RS03260at 692.509 kb on - strand, within DZA65_RS03260at 692.521 kb on + strand, within DZA65_RS03260at 692.567 kb on + strand, within DZA65_RS03260at 692.567 kb on + strand, within DZA65_RS03260at 692.567 kb on + strand, within DZA65_RS03260at 692.567 kb on + strand, within DZA65_RS03260at 692.568 kb on - strand, within DZA65_RS03260at 692.582 kb on + strand, within DZA65_RS03260at 692.582 kb on + strandat 692.583 kb on - strand, within DZA65_RS03260at 692.586 kb on + strand, within DZA65_RS03260at 692.587 kb on - strand, within DZA65_RS03260at 692.587 kb on - strand, within DZA65_RS03260at 692.715 kb on + strandat 692.715 kb on + strandat 692.735 kb on + strandat 692.735 kb on + strandat 692.735 kb on + strandat 692.735 kb on + strandat 692.735 kb on + strandat 692.735 kb on + strandat 692.786 kb on + strandat 692.790 kb on - strandat 692.862 kb on - strand, within DZA65_RS03265at 692.881 kb on + strand, within DZA65_RS03265at 692.881 kb on + strand, within DZA65_RS03265

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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690,921 + DZA65_RS03255 0.62 -2.6
690,922 - DZA65_RS03255 0.62 -0.9
691,028 - DZA65_RS03255 0.67 +2.7
691,228 - DZA65_RS03255 0.77 -1.8
691,670 + -1.2
691,671 - -1.8
691,723 + -1.1
691,724 - +0.4
691,724 - +0.1
691,724 - -0.6
691,724 - -0.6
691,724 - +0.4
691,724 - -0.9
691,726 + -0.5
691,752 + +0.2
691,753 - +0.1
691,774 + -1.4
691,774 + -1.5
691,774 + -0.8
691,774 + -0.1
691,774 + -1.1
691,774 + +1.0
691,774 + -0.7
691,774 + +0.1
691,774 + -1.2
691,775 - -0.0
691,775 - -0.9
691,775 - -0.9
691,775 - +0.4
691,777 + +0.8
691,777 + +1.0
691,777 + -0.1
691,777 + +0.3
691,777 + -0.9
691,778 - +1.4
691,778 - -0.2
691,779 + +0.1
691,780 - +0.4
691,780 - +0.4
691,780 - -0.2
691,796 + -0.4
691,797 - +1.0
691,877 + +0.4
691,877 + +1.4
691,878 - +0.4
691,878 - -0.6
691,878 - -0.2
691,894 + +1.4
691,894 + +1.1
691,895 - -0.6
691,895 - -2.2
692,021 - +1.4
692,046 + DZA65_RS03260 0.22 +0.8
692,046 + DZA65_RS03260 0.22 +0.4
692,047 - DZA65_RS03260 0.22 +1.4
692,047 - DZA65_RS03260 0.22 -0.2
692,048 + DZA65_RS03260 0.22 -1.2
692,049 - DZA65_RS03260 0.22 -0.9
692,049 - DZA65_RS03260 0.22 -0.9
692,066 + DZA65_RS03260 0.24 -0.1
692,066 + DZA65_RS03260 0.24 -1.6
692,066 + DZA65_RS03260 0.24 +1.4
692,066 + DZA65_RS03260 0.24 +0.4
692,066 + DZA65_RS03260 0.24 +1.8
692,135 - DZA65_RS03260 0.32 +0.4
692,153 + DZA65_RS03260 0.34 -0.3
692,165 + DZA65_RS03260 0.35 +1.4
692,244 - DZA65_RS03260 0.44 -1.8
692,364 - DZA65_RS03260 0.58 +0.4
692,421 - -0.6
692,506 + DZA65_RS03260 0.74 -1.1
692,506 + DZA65_RS03260 0.74 -1.8
692,508 + DZA65_RS03260 0.74 -2.3
692,509 - DZA65_RS03260 0.74 +0.1
692,509 - DZA65_RS03260 0.74 +1.4
692,521 + DZA65_RS03260 0.75 +0.1
692,567 + DZA65_RS03260 0.81 +0.2
692,567 + DZA65_RS03260 0.81 -0.6
692,567 + DZA65_RS03260 0.81 -0.7
692,567 + DZA65_RS03260 0.81 +0.4
692,568 - DZA65_RS03260 0.81 +0.2
692,582 + DZA65_RS03260 0.82 +0.4
692,582 + +0.4
692,583 - DZA65_RS03260 0.82 +0.3
692,586 + DZA65_RS03260 0.83 +0.4
692,587 - DZA65_RS03260 0.83 -1.2
692,587 - DZA65_RS03260 0.83 +2.0
692,715 + +0.3
692,715 + +0.2
692,735 + +0.8
692,735 + +0.4
692,735 + +0.3
692,735 + -0.9
692,735 + -0.2
692,735 + +0.3
692,786 + +0.8
692,790 - -0.2
692,862 - DZA65_RS03265 0.27 -0.4
692,881 + DZA65_RS03265 0.58 -0.6
692,881 + DZA65_RS03265 0.58 +0.5

Or see this region's nucleotide sequence