Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02945 and DZA65_RS02950 are separated by 360 nucleotides DZA65_RS02950 and DZA65_RS02965 are separated by 556 nucleotides
DZA65_RS02945: DZA65_RS02945 - transcriptional regulator ExuR, at 629,057 to 629,836
_RS02945
DZA65_RS02950: DZA65_RS02950 - MFS transporter, at 630,197 to 631,498
_RS02950
DZA65_RS02965: DZA65_RS02965 - glucuronate isomerase, at 632,055 to 633,473
_RS02965
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 629.288 kb on - strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.391 kb on - strand, within DZA65_RS02945 at 629.522 kb on + strand, within DZA65_RS02945 at 629.808 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.850 kb on - strand at 629.854 kb on + strand at 629.855 kb on - strand at 629.892 kb on + strand at 629.893 kb on - strand at 629.893 kb on - strand at 629.919 kb on + strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 630.041 kb on + strand at 630.042 kb on - strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.061 kb on - strand at 630.061 kb on - strand at 630.070 kb on - strand at 630.070 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.152 kb on - strand at 630.156 kb on + strand at 630.305 kb on - strand at 630.329 kb on - strand, within DZA65_RS02950 at 630.329 kb on - strand, within DZA65_RS02950 at 630.340 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.359 kb on + strand, within DZA65_RS02950 at 630.360 kb on - strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.719 kb on - strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.897 kb on + strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.898 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.946 kb on - strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 630.951 kb on + strand, within DZA65_RS02950 at 631.086 kb on + strand, within DZA65_RS02950 at 631.086 kb on + strand, within DZA65_RS02950 at 631.087 kb on - strand, within DZA65_RS02950 at 631.087 kb on - strand, within DZA65_RS02950 at 631.288 kb on + strand, within DZA65_RS02950 at 631.289 kb on - strand, within DZA65_RS02950 at 631.289 kb on - strand, within DZA65_RS02950 at 631.299 kb on + strand, within DZA65_RS02950 at 631.299 kb on + strand, within DZA65_RS02950 at 631.300 kb on - strand, within DZA65_RS02950 at 631.300 kb on - strand, within DZA65_RS02950 at 631.318 kb on + strand, within DZA65_RS02950 at 631.326 kb on + strand, within DZA65_RS02950 at 631.326 kb on + strand, within DZA65_RS02950 at 631.339 kb on - strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.351 kb on + strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.352 kb on - strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.353 kb on + strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.354 kb on - strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.359 kb on + strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.360 kb on - strand, within DZA65_RS02950 at 631.502 kb on - strand at 631.519 kb on + strand at 631.519 kb on + strand at 631.523 kb on + strand at 631.557 kb on + strand at 631.558 kb on - strand at 631.558 kb on - strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.563 kb on + strand at 631.564 kb on - strand at 631.752 kb on + strand at 632.014 kb on + strand at 632.038 kb on - strand at 632.038 kb on - strand at 632.068 kb on + strand at 632.113 kb on - strand at 632.148 kb on + strand at 632.188 kb on - strand at 632.206 kb on - strand, within DZA65_RS02965 at 632.336 kb on + strand, within DZA65_RS02965 at 632.336 kb on + strand, within DZA65_RS02965 at 632.337 kb on - strand, within DZA65_RS02965 at 632.337 kb on - strand, within DZA65_RS02965 at 632.355 kb on + strand, within DZA65_RS02965 at 632.356 kb on - strand, within DZA65_RS02965 at 632.356 kb on - strand, within DZA65_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 629,288 - DZA65_RS02945 0.30 -0.3 629,390 + DZA65_RS02945 0.43 -0.1 629,390 + DZA65_RS02945 0.43 -0.2 629,390 + DZA65_RS02945 0.43 -0.6 629,391 - DZA65_RS02945 0.43 +0.8 629,522 + DZA65_RS02945 0.60 -0.9 629,808 + +0.6 629,849 + +0.7 629,849 + -0.6 629,849 + -0.1 629,850 - +0.8 629,854 + -0.4 629,855 - -1.1 629,892 + +0.5 629,893 - -0.1 629,893 - +0.6 629,919 + -0.6 629,920 - -0.8 629,920 - +0.2 629,920 - -1.4 629,920 - -0.7 629,920 - -0.2 629,920 - +0.1 629,920 - -1.4 629,920 - +1.1 629,920 - -0.1 629,920 - +0.5 629,920 - +0.6 629,922 - -0.6 629,922 - +0.7 629,922 - +1.0 629,922 - -0.3 629,931 - -0.4 629,931 - +0.7 629,931 - +0.5 629,931 - -0.3 629,931 - +1.7 629,931 - -0.1 629,931 - +0.3 629,931 - -0.7 629,931 - -2.2 630,041 + -0.2 630,042 - +3.0 630,043 + -0.4 630,043 + -0.9 630,043 + -0.1 630,044 - +0.7 630,044 - -0.1 630,044 - +0.8 630,044 - +0.0 630,044 - -1.8 630,061 - -1.5 630,061 - -0.4 630,070 - -0.5 630,070 - +0.4 630,072 - +0.3 630,072 - -0.5 630,072 - +1.8 630,112 + -0.5 630,112 + -0.1 630,112 + +0.1 630,112 + -1.2 630,112 + -1.7 630,113 - -0.8 630,113 - +0.0 630,113 - -0.2 630,113 - -1.1 630,113 - -0.2 630,113 - -0.9 630,113 - -0.3 630,113 - +1.7 630,113 - +0.7 630,113 - -1.1 630,113 - +1.2 630,152 - -2.2 630,156 + +0.4 630,305 - +0.0 630,329 - DZA65_RS02950 0.10 -0.2 630,329 - DZA65_RS02950 0.10 -0.6 630,340 + DZA65_RS02950 0.11 -0.7 630,356 + DZA65_RS02950 0.12 -1.0 630,356 + DZA65_RS02950 0.12 -0.4 630,356 + DZA65_RS02950 0.12 -0.9 630,356 + DZA65_RS02950 0.12 -0.2 630,357 - DZA65_RS02950 0.12 -0.7 630,357 - DZA65_RS02950 0.12 +0.3 630,357 - DZA65_RS02950 0.12 -0.1 630,359 + DZA65_RS02950 0.12 -0.3 630,360 - DZA65_RS02950 0.13 +0.3 630,522 + DZA65_RS02950 0.25 -0.4 630,522 + DZA65_RS02950 0.25 -1.8 630,522 + DZA65_RS02950 0.25 +1.8 630,522 + DZA65_RS02950 0.25 -2.0 630,522 + DZA65_RS02950 0.25 +0.9 630,522 + DZA65_RS02950 0.25 -0.3 630,523 - DZA65_RS02950 0.25 -0.1 630,523 - DZA65_RS02950 0.25 +0.5 630,557 + DZA65_RS02950 0.28 +0.0 630,557 + DZA65_RS02950 0.28 -0.1 630,558 - DZA65_RS02950 0.28 -0.6 630,558 - DZA65_RS02950 0.28 -0.2 630,621 + DZA65_RS02950 0.33 +1.2 630,621 + DZA65_RS02950 0.33 -0.4 630,621 + DZA65_RS02950 0.33 -0.0 630,645 + DZA65_RS02950 0.34 +0.3 630,645 + DZA65_RS02950 0.34 -0.4 630,645 + DZA65_RS02950 0.34 +0.2 630,646 - DZA65_RS02950 0.34 -0.1 630,646 - DZA65_RS02950 0.34 +0.8 630,646 - DZA65_RS02950 0.34 -0.2 630,646 - DZA65_RS02950 0.34 -0.7 630,646 - DZA65_RS02950 0.34 +0.2 630,719 - DZA65_RS02950 0.40 +1.3 630,726 + DZA65_RS02950 0.41 -1.0 630,726 + DZA65_RS02950 0.41 -0.0 630,727 - DZA65_RS02950 0.41 +1.6 630,727 - DZA65_RS02950 0.41 +1.1 630,727 - DZA65_RS02950 0.41 -1.0 630,897 + DZA65_RS02950 0.54 +0.7 630,897 + DZA65_RS02950 0.54 -0.6 630,897 + DZA65_RS02950 0.54 -0.6 630,897 + DZA65_RS02950 0.54 +0.2 630,898 - DZA65_RS02950 0.54 +0.5 630,898 - DZA65_RS02950 0.54 +0.4 630,898 - DZA65_RS02950 0.54 +1.7 630,946 - DZA65_RS02950 0.58 -0.3 630,946 - DZA65_RS02950 0.58 +1.1 630,946 - DZA65_RS02950 0.58 -0.3 630,951 + DZA65_RS02950 0.58 +0.6 630,951 + DZA65_RS02950 0.58 -0.6 630,951 + DZA65_RS02950 0.58 -2.0 631,086 + DZA65_RS02950 0.68 +0.8 631,086 + DZA65_RS02950 0.68 -1.6 631,087 - DZA65_RS02950 0.68 +0.1 631,087 - DZA65_RS02950 0.68 +0.8 631,288 + DZA65_RS02950 0.84 +0.0 631,289 - DZA65_RS02950 0.84 +0.0 631,289 - DZA65_RS02950 0.84 +0.0 631,299 + DZA65_RS02950 0.85 +0.0 631,299 + DZA65_RS02950 0.85 -0.2 631,300 - DZA65_RS02950 0.85 +0.4 631,300 - DZA65_RS02950 0.85 +0.6 631,318 + DZA65_RS02950 0.86 +0.5 631,326 + DZA65_RS02950 0.87 +0.2 631,326 + DZA65_RS02950 0.87 -0.5 631,339 - DZA65_RS02950 0.88 +0.0 631,351 + DZA65_RS02950 0.89 -2.7 631,351 + DZA65_RS02950 0.89 -0.9 631,351 + DZA65_RS02950 0.89 -0.1 631,351 + DZA65_RS02950 0.89 -1.2 631,351 + DZA65_RS02950 0.89 -0.2 631,351 + DZA65_RS02950 0.89 -0.6 631,351 + DZA65_RS02950 0.89 +0.0 631,352 - DZA65_RS02950 0.89 -0.6 631,352 - DZA65_RS02950 0.89 +0.8 631,352 - DZA65_RS02950 0.89 +0.5 631,352 - DZA65_RS02950 0.89 +0.1 631,352 - DZA65_RS02950 0.89 +0.3 631,352 - DZA65_RS02950 0.89 +0.2 631,352 - DZA65_RS02950 0.89 +0.6 631,352 - DZA65_RS02950 0.89 +0.0 631,353 + DZA65_RS02950 0.89 -1.0 631,353 + DZA65_RS02950 0.89 +0.2 631,353 + DZA65_RS02950 0.89 -0.2 631,353 + DZA65_RS02950 0.89 +0.1 631,353 + DZA65_RS02950 0.89 +0.3 631,353 + DZA65_RS02950 0.89 -0.4 631,353 + DZA65_RS02950 0.89 +0.4 631,353 + DZA65_RS02950 0.89 +1.2 631,353 + DZA65_RS02950 0.89 +1.1 631,353 + DZA65_RS02950 0.89 +0.3 631,353 + DZA65_RS02950 0.89 -0.2 631,353 + DZA65_RS02950 0.89 +1.8 631,353 + DZA65_RS02950 0.89 -1.6 631,353 + DZA65_RS02950 0.89 +0.7 631,353 + DZA65_RS02950 0.89 -1.3 631,353 + DZA65_RS02950 0.89 -0.2 631,353 + DZA65_RS02950 0.89 +0.0 631,353 + DZA65_RS02950 0.89 +1.0 631,353 + DZA65_RS02950 0.89 -0.8 631,353 + DZA65_RS02950 0.89 +1.0 631,353 + DZA65_RS02950 0.89 +0.3 631,354 - DZA65_RS02950 0.89 -1.0 631,354 - DZA65_RS02950 0.89 +0.4 631,354 - DZA65_RS02950 0.89 -0.2 631,354 - DZA65_RS02950 0.89 +0.7 631,354 - DZA65_RS02950 0.89 -1.4 631,354 - DZA65_RS02950 0.89 -0.2 631,354 - DZA65_RS02950 0.89 -0.7 631,354 - DZA65_RS02950 0.89 -0.1 631,354 - DZA65_RS02950 0.89 -0.4 631,354 - DZA65_RS02950 0.89 +0.6 631,354 - DZA65_RS02950 0.89 -1.8 631,354 - DZA65_RS02950 0.89 +1.2 631,354 - DZA65_RS02950 0.89 +0.3 631,354 - DZA65_RS02950 0.89 -0.6 631,354 - DZA65_RS02950 0.89 -0.2 631,354 - DZA65_RS02950 0.89 +0.3 631,354 - DZA65_RS02950 0.89 -0.2 631,354 - DZA65_RS02950 0.89 +0.4 631,354 - DZA65_RS02950 0.89 -2.4 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 +0.7 631,354 - DZA65_RS02950 0.89 +1.7 631,354 - DZA65_RS02950 0.89 -0.3 631,354 - DZA65_RS02950 0.89 +0.5 631,354 - DZA65_RS02950 0.89 +0.2 631,354 - DZA65_RS02950 0.89 +0.2 631,354 - DZA65_RS02950 0.89 +1.3 631,359 + DZA65_RS02950 0.89 +0.5 631,359 + DZA65_RS02950 0.89 +0.1 631,359 + DZA65_RS02950 0.89 +1.1 631,360 - DZA65_RS02950 0.89 +0.2 631,360 - DZA65_RS02950 0.89 +0.2 631,360 - DZA65_RS02950 0.89 -0.9 631,360 - DZA65_RS02950 0.89 -0.1 631,502 - -0.6 631,519 + -2.3 631,519 + +1.0 631,523 + +1.1 631,557 + -0.9 631,558 - -1.4 631,558 - -1.2 631,563 + -0.5 631,563 + -1.2 631,563 + -1.7 631,563 + +0.9 631,563 + -0.5 631,563 + +0.2 631,563 + +0.4 631,564 - +0.1 631,752 + -0.2 632,014 + -0.1 632,038 - +1.2 632,038 - +0.4 632,068 + +0.7 632,113 - -1.8 632,148 + -0.2 632,188 - -0.0 632,206 - DZA65_RS02965 0.11 -0.3 632,336 + DZA65_RS02965 0.20 -0.8 632,336 + DZA65_RS02965 0.20 +0.7 632,337 - DZA65_RS02965 0.20 -0.7 632,337 - DZA65_RS02965 0.20 -0.1 632,355 + DZA65_RS02965 0.21 +0.5 632,356 - DZA65_RS02965 0.21 -0.3 632,356 - DZA65_RS02965 0.21 +0.8
Or see this region's nucleotide sequence