Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02870 and DZA65_RS02875 are separated by 21 nucleotides DZA65_RS02875 and DZA65_RS02880 are separated by 54 nucleotides DZA65_RS02880 and DZA65_RS02885 are separated by 129 nucleotides DZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotides
DZA65_RS02870: DZA65_RS02870 - chorismate lyase, at 616,602 to 617,117
_RS02870
DZA65_RS02875: DZA65_RS02875 - 4-hydroxybenzoate octaprenyltransferase, at 617,139 to 618,002
_RS02875
DZA65_RS02880: DZA65_RS02880 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 618,057 to 620,534
_RS02880
DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029
_RS02885
DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750
_RS02890
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -1
0
1 at 617.091 kb on + strand at 617.091 kb on + strand at 618.001 kb on - strand at 618.001 kb on - strand at 618.001 kb on - strand at 618.001 kb on - strand at 618.001 kb on - strand at 618.015 kb on + strand at 618.015 kb on + strand at 618.016 kb on - strand at 618.016 kb on - strand at 618.063 kb on + strand at 620.593 kb on + strand at 620.593 kb on + strand at 620.625 kb on - strand at 620.659 kb on + strand at 620.659 kb on + strand at 620.659 kb on + strand at 620.659 kb on + strand at 620.660 kb on - strand at 620.691 kb on - strand at 620.920 kb on - strand at 621.040 kb on - strand at 621.040 kb on - strand at 621.097 kb on + strand at 621.098 kb on - strand at 621.098 kb on - strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.100 kb on - strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 617,091 + -1.2 617,091 + +0.3 618,001 - -1.0 618,001 - +0.3 618,001 - -1.3 618,001 - +0.4 618,001 - -0.1 618,015 + -0.6 618,015 + -0.9 618,016 - -0.2 618,016 - -0.6 618,063 + -0.2 620,593 + -0.3 620,593 + -0.0 620,625 - -0.6 620,659 + -0.7 620,659 + +1.4 620,659 + -0.7 620,659 + -0.4 620,660 - -0.2 620,691 - +0.3 620,920 - -1.6 621,040 - -0.6 621,040 - +0.8 621,097 + -0.3 621,098 - +0.8 621,098 - +0.2 621,099 + -0.5 621,099 + +0.9 621,099 + -1.7 621,099 + +1.4 621,099 + -0.6 621,100 - -1.4 621,101 + +0.4 621,101 + -1.3 621,101 + -1.7 621,101 + +0.1
Or see this region's nucleotide sequence