Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02855 and DZA65_RS02860 are separated by 188 nucleotides DZA65_RS02860 and DZA65_RS02865 are separated by 49 nucleotides DZA65_RS02865 and DZA65_RS02870 are separated by 376 nucleotides DZA65_RS02870 and DZA65_RS02875 are separated by 21 nucleotides
DZA65_RS02855: DZA65_RS02855 - FxsA family protein, at 613,544 to 614,047
_RS02855
DZA65_RS02860: DZA65_RS02860 - co-chaperone GroES, at 614,236 to 614,529
_RS02860
DZA65_RS02865: DZA65_RS02865 - chaperonin GroEL, at 614,579 to 616,225
_RS02865
DZA65_RS02870: DZA65_RS02870 - chorismate lyase, at 616,602 to 617,117
_RS02870
DZA65_RS02875: DZA65_RS02875 - 4-hydroxybenzoate octaprenyltransferase, at 617,139 to 618,002
_RS02875
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 613.583 kb on + strand at 613.583 kb on + strand at 613.597 kb on + strand, within DZA65_RS02855 at 613.598 kb on - strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.688 kb on - strand, within DZA65_RS02855 at 613.763 kb on - strand, within DZA65_RS02855 at 613.776 kb on + strand, within DZA65_RS02855 at 613.791 kb on + strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 614.100 kb on + strand at 614.100 kb on + strand at 614.100 kb on + strand at 614.101 kb on - strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 616.223 kb on + strand at 616.223 kb on + strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.224 kb on - strand at 616.274 kb on - strand at 616.274 kb on - strand at 616.276 kb on - strand at 616.300 kb on + strand at 616.301 kb on - strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.350 kb on + strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.351 kb on - strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.356 kb on + strand at 616.357 kb on - strand at 616.357 kb on - strand at 616.357 kb on - strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.368 kb on + strand at 616.369 kb on - strand at 616.369 kb on - strand at 616.374 kb on + strand at 616.375 kb on - strand at 616.375 kb on - strand at 616.375 kb on - strand at 616.393 kb on - strand at 616.393 kb on - strand at 616.411 kb on + strand at 616.411 kb on + strand at 616.411 kb on + strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.412 kb on - strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.461 kb on + strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.462 kb on - strand at 616.550 kb on + strand at 616.555 kb on + strand at 616.555 kb on + strand at 616.556 kb on - strand at 616.556 kb on - strand at 616.556 kb on - strand at 616.575 kb on + strand at 616.575 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.599 kb on + strand at 616.600 kb on - strand at 616.600 kb on - strand at 616.600 kb on - strand at 616.700 kb on + strand, within DZA65_RS02870 at 616.700 kb on + strand, within DZA65_RS02870 at 616.700 kb on + strand, within DZA65_RS02870 at 616.825 kb on + strand, within DZA65_RS02870 at 616.825 kb on + strand, within DZA65_RS02870 at 616.826 kb on - strand, within DZA65_RS02870 at 616.826 kb on - strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.864 kb on + strand, within DZA65_RS02870 at 616.865 kb on - strand, within DZA65_RS02870 at 616.874 kb on + strand, within DZA65_RS02870 at 616.918 kb on + strand, within DZA65_RS02870 at 617.091 kb on + strand at 617.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 613,583 + +0.7 613,583 + +0.7 613,597 + DZA65_RS02855 0.11 -0.5 613,598 - DZA65_RS02855 0.11 +1.2 613,678 + DZA65_RS02855 0.27 -0.6 613,678 + DZA65_RS02855 0.27 -1.5 613,678 + DZA65_RS02855 0.27 -0.8 613,678 + DZA65_RS02855 0.27 -1.7 613,678 + DZA65_RS02855 0.27 +0.5 613,678 + DZA65_RS02855 0.27 +0.6 613,678 + DZA65_RS02855 0.27 -0.6 613,679 - DZA65_RS02855 0.27 +1.6 613,679 - DZA65_RS02855 0.27 -1.0 613,679 - DZA65_RS02855 0.27 +1.0 613,679 - DZA65_RS02855 0.27 -0.3 613,683 + DZA65_RS02855 0.28 +0.9 613,683 + DZA65_RS02855 0.28 -0.8 613,683 + DZA65_RS02855 0.28 -0.7 613,683 + DZA65_RS02855 0.28 -0.1 613,683 + DZA65_RS02855 0.28 +0.4 613,683 + DZA65_RS02855 0.28 -0.2 613,683 + DZA65_RS02855 0.28 -0.5 613,683 + DZA65_RS02855 0.28 +1.2 613,683 + DZA65_RS02855 0.28 +0.2 613,684 - DZA65_RS02855 0.28 +0.4 613,684 - DZA65_RS02855 0.28 -0.2 613,684 - DZA65_RS02855 0.28 -1.2 613,684 - DZA65_RS02855 0.28 +0.3 613,684 - DZA65_RS02855 0.28 -0.3 613,687 + DZA65_RS02855 0.28 -2.0 613,687 + DZA65_RS02855 0.28 -1.2 613,688 - DZA65_RS02855 0.29 +0.1 613,763 - DZA65_RS02855 0.43 +0.6 613,776 + DZA65_RS02855 0.46 +0.5 613,791 + DZA65_RS02855 0.49 -1.6 613,792 - DZA65_RS02855 0.49 +0.8 613,792 - DZA65_RS02855 0.49 -0.2 613,792 - DZA65_RS02855 0.49 +0.0 614,100 + +1.2 614,100 + -1.0 614,100 + +0.8 614,101 - +0.5 614,154 + +2.1 614,154 + -0.3 614,154 + -0.3 614,154 + +0.2 614,154 + +0.7 614,154 + +0.2 616,223 + -1.3 616,223 + -0.6 616,224 - -0.7 616,224 - -0.4 616,224 - -0.3 616,224 - -1.5 616,224 - -0.1 616,274 - -0.5 616,274 - -0.8 616,276 - -0.7 616,300 + -0.6 616,301 - -0.4 616,350 + +0.3 616,350 + +0.4 616,350 + -0.0 616,350 + +0.1 616,350 + -0.4 616,350 + +0.2 616,350 + -0.5 616,350 + -0.4 616,350 + -0.4 616,350 + +0.4 616,350 + +0.1 616,350 + -1.4 616,350 + +3.0 616,350 + +0.4 616,350 + -1.9 616,350 + +0.6 616,350 + +1.4 616,351 - +0.6 616,351 - +0.2 616,351 - -0.5 616,351 - +1.2 616,351 - -1.2 616,351 - -0.3 616,351 - +1.4 616,351 - +0.2 616,351 - +0.2 616,351 - -0.4 616,351 - -0.4 616,351 - -0.5 616,351 - -1.4 616,351 - +1.4 616,351 - +0.4 616,351 - +0.4 616,351 - -0.2 616,351 - +1.0 616,351 - -1.9 616,351 - -0.0 616,351 - +0.7 616,351 - -0.5 616,351 - -0.4 616,351 - +0.8 616,351 - -0.7 616,351 - +0.0 616,351 - -0.3 616,351 - +0.4 616,351 - +0.9 616,356 + -0.2 616,356 + +0.7 616,356 + -0.5 616,356 + -0.5 616,357 - -0.4 616,357 - -0.2 616,357 - -0.1 616,368 + +0.2 616,368 + +0.9 616,368 + -1.0 616,368 + -1.2 616,368 + -0.7 616,368 + -0.2 616,368 + -0.5 616,368 + -0.1 616,368 + +0.1 616,368 + +0.2 616,368 + -0.2 616,368 + -1.6 616,368 + +0.3 616,369 - +0.5 616,369 - -0.4 616,374 + +0.4 616,375 - -0.2 616,375 - -0.1 616,375 - +0.7 616,393 - -1.0 616,393 - -0.4 616,411 + +0.4 616,411 + -0.2 616,411 + +0.4 616,412 - +0.0 616,412 - -0.4 616,412 - +0.9 616,412 - -1.2 616,412 - +0.2 616,461 + +0.1 616,461 + +0.8 616,461 + +0.2 616,461 + -0.9 616,461 + -0.1 616,462 - -0.6 616,462 - -0.5 616,462 - -0.4 616,462 - +0.7 616,462 - -0.5 616,462 - -0.8 616,462 - +0.3 616,550 + +0.3 616,555 + -0.2 616,555 + -1.6 616,556 - +0.6 616,556 - -0.4 616,556 - +0.4 616,575 + -1.0 616,575 + -0.1 616,599 + -0.8 616,599 + +0.4 616,599 + +0.0 616,599 + -0.0 616,599 + -0.9 616,599 + -0.6 616,599 + -0.5 616,600 - -0.2 616,600 - -0.9 616,600 - -1.1 616,700 + DZA65_RS02870 0.19 -0.3 616,700 + DZA65_RS02870 0.19 -0.2 616,700 + DZA65_RS02870 0.19 +0.1 616,825 + DZA65_RS02870 0.43 -1.0 616,825 + DZA65_RS02870 0.43 +0.8 616,826 - DZA65_RS02870 0.43 +2.4 616,826 - DZA65_RS02870 0.43 -0.1 616,864 + DZA65_RS02870 0.51 -1.5 616,864 + DZA65_RS02870 0.51 -1.9 616,864 + DZA65_RS02870 0.51 -1.3 616,864 + DZA65_RS02870 0.51 -1.7 616,865 - DZA65_RS02870 0.51 -1.5 616,874 + DZA65_RS02870 0.53 +0.4 616,918 + DZA65_RS02870 0.61 +0.8 617,091 + -1.2 617,091 + +0.3
Or see this region's nucleotide sequence