Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02820 and DZA65_RS02825 are separated by 163 nucleotides DZA65_RS02825 and DZA65_RS02830 are separated by 162 nucleotides DZA65_RS02830 and DZA65_RS02835 are separated by 95 nucleotides
DZA65_RS02820: DZA65_RS02820 - tyrosine-type recombinase/integrase, at 605,641 to 606,900
_RS02820
DZA65_RS02825: DZA65_RS02825 - tRNA-Phe, at 607,064 to 607,139
_RS02825
DZA65_RS02830: DZA65_RS02830 - transcriptional regulator, at 607,302 to 607,877
_RS02830
DZA65_RS02835: DZA65_RS02835 - protein-disulfide reductase DsbD, at 607,973 to 609,709
_RS02835
Position (kb) 607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.373 kb on + strand, within DZA65_RS02820 at 606.380 kb on + strand, within DZA65_RS02820 at 606.409 kb on + strand, within DZA65_RS02820 at 606.409 kb on + strand, within DZA65_RS02820 at 606.612 kb on + strand, within DZA65_RS02820 at 606.613 kb on - strand, within DZA65_RS02820 at 606.613 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.776 kb on + strand at 606.776 kb on + strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.821 kb on + strand at 606.822 kb on - strand at 606.822 kb on - strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.824 kb on - strand at 606.824 kb on - strand at 606.824 kb on - strand at 606.848 kb on + strand at 606.848 kb on + strand at 606.848 kb on + strand at 606.849 kb on - strand at 606.849 kb on - strand at 606.856 kb on - strand at 606.914 kb on + strand at 606.914 kb on + strand at 606.914 kb on + strand at 606.915 kb on - strand at 606.943 kb on - strand at 606.991 kb on + strand at 607.038 kb on + strand at 607.039 kb on - strand at 607.041 kb on - strand at 607.041 kb on - strand at 607.244 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.342 kb on - strand at 607.342 kb on - strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.395 kb on + strand, within DZA65_RS02830 at 607.395 kb on + strand, within DZA65_RS02830 at 607.440 kb on + strand, within DZA65_RS02830 at 607.440 kb on + strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.501 kb on + strand, within DZA65_RS02830 at 607.502 kb on - strand, within DZA65_RS02830 at 607.630 kb on + strand, within DZA65_RS02830 at 607.631 kb on - strand, within DZA65_RS02830 at 607.635 kb on + strand, within DZA65_RS02830 at 607.636 kb on - strand, within DZA65_RS02830 at 607.686 kb on - strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.715 kb on - strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.730 kb on - strand, within DZA65_RS02830 at 607.779 kb on + strand, within DZA65_RS02830 at 607.779 kb on + strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.803 kb on - strand, within DZA65_RS02830 at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.906 kb on + strand at 607.920 kb on + strand at 607.921 kb on - strand at 607.943 kb on - strand at 607.975 kb on - strand at 608.020 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.205 kb on + strand, within DZA65_RS02835 at 608.205 kb on + strand, within DZA65_RS02835 at 608.206 kb on - strand, within DZA65_RS02835 at 608.543 kb on + strand, within DZA65_RS02835 at 608.570 kb on + strand, within DZA65_RS02835 at 608.570 kb on + strand, within DZA65_RS02835 at 608.570 kb on + strand, within DZA65_RS02835 at 608.571 kb on - strand, within DZA65_RS02835 at 608.571 kb on - strand at 608.571 kb on - strand, within DZA65_RS02835 at 608.644 kb on + strand, within DZA65_RS02835 at 608.679 kb on + strand at 608.679 kb on + strand, within DZA65_RS02835 at 608.679 kb on + strand, within DZA65_RS02835 at 608.679 kb on + strand, within DZA65_RS02835 at 608.680 kb on - strand, within DZA65_RS02835 at 608.680 kb on - strand, within DZA65_RS02835 at 608.680 kb on - strand, within DZA65_RS02835 at 608.680 kb on - strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.685 kb on + strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.686 kb on - strand, within DZA65_RS02835 at 608.687 kb on + strand, within DZA65_RS02835 at 608.688 kb on - strand, within DZA65_RS02835 at 608.688 kb on - strand, within DZA65_RS02835 at 608.730 kb on + strand, within DZA65_RS02835 at 608.730 kb on + strand, within DZA65_RS02835 at 608.730 kb on + strand, within DZA65_RS02835 at 608.730 kb on + strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835 at 608.731 kb on - strand, within DZA65_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 606,373 + DZA65_RS02820 0.58 -0.2 606,380 + DZA65_RS02820 0.59 -0.5 606,409 + DZA65_RS02820 0.61 +0.1 606,409 + DZA65_RS02820 0.61 +1.4 606,612 + DZA65_RS02820 0.77 +0.9 606,613 - DZA65_RS02820 0.77 -0.4 606,613 - DZA65_RS02820 0.77 -0.9 606,682 - DZA65_RS02820 0.83 -0.2 606,682 - DZA65_RS02820 0.83 -1.3 606,682 - DZA65_RS02820 0.83 -0.4 606,682 - DZA65_RS02820 0.83 -0.6 606,776 + -0.2 606,776 + -2.2 606,777 - -0.6 606,777 - +1.0 606,777 - +1.6 606,777 - +0.4 606,777 - -0.9 606,777 - +1.1 606,777 - +0.0 606,777 - -0.6 606,780 + -2.4 606,780 + +0.8 606,780 + -0.9 606,780 + -0.7 606,780 + -0.1 606,780 + -0.3 606,780 + +1.9 606,780 + -0.9 606,780 + +0.4 606,780 + +0.3 606,781 - +0.4 606,781 - +0.3 606,781 - -2.0 606,781 - -1.7 606,781 - +0.8 606,781 - -2.0 606,781 - -0.7 606,821 + +0.4 606,822 - -1.0 606,822 - +1.1 606,823 + +2.7 606,823 + +0.7 606,823 + -0.5 606,823 + -0.2 606,823 + -1.0 606,824 - -0.7 606,824 - -0.4 606,824 - +0.8 606,848 + +0.0 606,848 + -0.3 606,848 + +1.7 606,849 - -0.8 606,849 - -1.0 606,856 - +2.1 606,914 + +0.7 606,914 + +0.4 606,914 + -1.3 606,915 - -2.2 606,943 - -0.7 606,991 + -0.9 607,038 + -0.2 607,039 - +0.6 607,041 - -0.3 607,041 - -0.9 607,244 + -0.2 607,341 + +0.6 607,341 + +1.9 607,341 + +0.4 607,341 + +0.1 607,342 - -0.6 607,342 - +0.0 607,344 + +0.2 607,344 + +0.5 607,344 + -0.2 607,344 + -0.8 607,344 + +1.4 607,345 - +0.4 607,345 - +0.2 607,345 - -1.2 607,345 - +0.4 607,345 - -0.7 607,395 + DZA65_RS02830 0.16 +0.3 607,395 + DZA65_RS02830 0.16 -0.8 607,440 + DZA65_RS02830 0.24 -0.7 607,440 + DZA65_RS02830 0.24 +1.6 607,441 - DZA65_RS02830 0.24 -0.8 607,441 - DZA65_RS02830 0.24 -0.7 607,441 - DZA65_RS02830 0.24 +1.8 607,490 + DZA65_RS02830 0.33 -2.5 607,490 + DZA65_RS02830 0.33 -0.8 607,490 + DZA65_RS02830 0.33 -0.3 607,491 - DZA65_RS02830 0.33 +0.5 607,491 - DZA65_RS02830 0.33 +0.8 607,491 - DZA65_RS02830 0.33 +0.0 607,495 + DZA65_RS02830 0.34 +0.4 607,495 + DZA65_RS02830 0.34 +0.6 607,495 + DZA65_RS02830 0.34 -0.5 607,496 - DZA65_RS02830 0.34 +0.4 607,496 - DZA65_RS02830 0.34 -0.6 607,496 - DZA65_RS02830 0.34 +1.4 607,496 - DZA65_RS02830 0.34 +0.2 607,496 - DZA65_RS02830 0.34 +0.0 607,501 + DZA65_RS02830 0.35 -0.1 607,502 - DZA65_RS02830 0.35 +0.6 607,630 + DZA65_RS02830 0.57 +0.3 607,631 - DZA65_RS02830 0.57 +0.5 607,635 + DZA65_RS02830 0.58 -0.1 607,636 - DZA65_RS02830 0.58 -0.3 607,686 - DZA65_RS02830 0.67 +0.5 607,694 + DZA65_RS02830 0.68 -2.7 607,694 + DZA65_RS02830 0.68 -1.9 607,694 + DZA65_RS02830 0.68 -0.1 607,694 + DZA65_RS02830 0.68 +0.4 607,694 + DZA65_RS02830 0.68 -0.2 607,694 + DZA65_RS02830 0.68 +0.7 607,695 - DZA65_RS02830 0.68 -0.2 607,695 - DZA65_RS02830 0.68 +0.7 607,695 - DZA65_RS02830 0.68 -0.6 607,695 - DZA65_RS02830 0.68 -0.9 607,695 - DZA65_RS02830 0.68 -0.2 607,715 - DZA65_RS02830 0.72 +0.9 607,729 + DZA65_RS02830 0.74 +0.7 607,729 + DZA65_RS02830 0.74 +0.4 607,729 + DZA65_RS02830 0.74 +0.3 607,730 - DZA65_RS02830 0.74 -0.7 607,779 + DZA65_RS02830 0.83 +0.6 607,779 + DZA65_RS02830 0.83 -0.8 607,780 - DZA65_RS02830 0.83 -0.1 607,780 - DZA65_RS02830 0.83 -2.2 607,780 - DZA65_RS02830 0.83 -0.2 607,780 - DZA65_RS02830 0.83 +1.5 607,803 - DZA65_RS02830 0.87 +0.0 607,889 + -0.0 607,889 + -1.0 607,889 + -0.6 607,889 + -0.2 607,889 + -0.2 607,889 + -0.6 607,890 - -0.5 607,890 - +0.6 607,890 - +0.9 607,890 - +0.1 607,890 - -0.7 607,890 - -1.2 607,893 + -0.6 607,893 + -0.5 607,893 + -0.2 607,893 + -0.7 607,893 + +0.4 607,893 + +0.7 607,893 + -0.8 607,893 + -1.5 607,893 + +0.1 607,893 + -0.7 607,894 - -1.3 607,894 - +0.5 607,894 - -1.2 607,894 - -0.2 607,894 - -1.2 607,894 - -0.2 607,894 - -0.2 607,906 + +0.0 607,920 + -0.3 607,921 - +0.2 607,943 - +0.7 607,975 - -1.5 608,020 + -2.2 608,099 + +0.4 608,099 + -0.6 608,099 + +0.3 608,099 + -0.2 608,099 + +1.4 608,099 + +0.7 608,099 + -0.3 608,099 + -0.1 608,099 + -0.7 608,099 + +0.4 608,100 - +0.0 608,100 - -0.7 608,100 - -1.1 608,100 - -0.4 608,100 - -0.9 608,100 - +0.6 608,100 - +0.4 608,100 - -1.2 608,100 - +0.6 608,100 - -0.5 608,100 - -0.3 608,205 + DZA65_RS02835 0.13 +0.4 608,205 + DZA65_RS02835 0.13 +0.8 608,206 - DZA65_RS02835 0.13 +0.2 608,543 + DZA65_RS02835 0.33 +0.1 608,570 + DZA65_RS02835 0.34 +1.1 608,570 + DZA65_RS02835 0.34 +0.1 608,570 + DZA65_RS02835 0.34 -0.8 608,571 - DZA65_RS02835 0.34 +0.7 608,571 - +0.4 608,571 - DZA65_RS02835 0.34 -0.3 608,644 + DZA65_RS02835 0.39 -0.9 608,679 + -0.6 608,679 + DZA65_RS02835 0.41 +0.5 608,679 + DZA65_RS02835 0.41 -0.3 608,679 + DZA65_RS02835 0.41 -0.6 608,680 - DZA65_RS02835 0.41 -0.2 608,680 - DZA65_RS02835 0.41 -0.9 608,680 - DZA65_RS02835 0.41 -0.0 608,680 - DZA65_RS02835 0.41 +0.1 608,685 + DZA65_RS02835 0.41 -0.4 608,685 + DZA65_RS02835 0.41 -0.4 608,685 + DZA65_RS02835 0.41 +0.3 608,685 + DZA65_RS02835 0.41 -0.3 608,685 + DZA65_RS02835 0.41 +1.2 608,685 + DZA65_RS02835 0.41 -2.3 608,685 + DZA65_RS02835 0.41 +0.6 608,685 + DZA65_RS02835 0.41 -1.5 608,685 + DZA65_RS02835 0.41 -1.0 608,686 - DZA65_RS02835 0.41 +0.4 608,686 - DZA65_RS02835 0.41 -0.3 608,686 - DZA65_RS02835 0.41 +0.0 608,686 - DZA65_RS02835 0.41 +1.0 608,686 - -0.6 608,686 - DZA65_RS02835 0.41 -0.2 608,686 - DZA65_RS02835 0.41 -0.4 608,686 - DZA65_RS02835 0.41 +0.2 608,686 - DZA65_RS02835 0.41 +2.6 608,687 + DZA65_RS02835 0.41 +0.4 608,688 - DZA65_RS02835 0.41 -0.3 608,688 - DZA65_RS02835 0.41 -1.4 608,730 + DZA65_RS02835 0.44 -0.4 608,730 + DZA65_RS02835 0.44 +0.4 608,730 + DZA65_RS02835 0.44 -1.2 608,730 + DZA65_RS02835 0.44 -0.1 608,731 - DZA65_RS02835 0.44 -1.6 608,731 - DZA65_RS02835 0.44 -0.2 608,731 - DZA65_RS02835 0.44 -0.2 608,731 - DZA65_RS02835 0.44 -0.7 608,731 - DZA65_RS02835 0.44 +0.2 608,731 - DZA65_RS02835 0.44 +0.2 608,731 - DZA65_RS02835 0.44 -0.2
Or see this region's nucleotide sequence