Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02785

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02780 and DZA65_RS02785 are separated by 59 nucleotidesDZA65_RS02785 and DZA65_RS02790 are separated by 138 nucleotides DZA65_RS02780: DZA65_RS02780 - IS630 family transposase, at 599,083 to 600,120 _RS02780 DZA65_RS02785: DZA65_RS02785 - DUF87 domain-containing protein, at 600,180 to 601,541 _RS02785 DZA65_RS02790: DZA65_RS02790 - DUF4868 domain-containing protein, at 601,680 to 602,630 _RS02790 Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1at 600.201 kb on + strandat 600.217 kb on + strandat 600.252 kb on + strandat 600.253 kb on - strandat 600.253 kb on - strandat 600.253 kb on - strandat 600.267 kb on - strandat 600.279 kb on + strandat 600.329 kb on + strand, within DZA65_RS02785at 600.329 kb on + strand, within DZA65_RS02785at 600.366 kb on - strand, within DZA65_RS02785at 600.380 kb on + strand, within DZA65_RS02785at 600.460 kb on - strand, within DZA65_RS02785at 600.460 kb on - strand, within DZA65_RS02785at 600.512 kb on + strand, within DZA65_RS02785at 600.516 kb on - strand, within DZA65_RS02785at 600.543 kb on + strand, within DZA65_RS02785at 600.544 kb on - strand, within DZA65_RS02785at 600.544 kb on - strand, within DZA65_RS02785at 600.791 kb on + strand, within DZA65_RS02785at 600.830 kb on + strandat 600.835 kb on + strand, within DZA65_RS02785at 600.836 kb on - strand, within DZA65_RS02785at 600.912 kb on - strand, within DZA65_RS02785at 600.930 kb on - strand, within DZA65_RS02785at 600.961 kb on + strand, within DZA65_RS02785at 600.962 kb on - strand, within DZA65_RS02785at 601.102 kb on - strand, within DZA65_RS02785at 601.102 kb on - strand, within DZA65_RS02785at 601.166 kb on - strand, within DZA65_RS02785at 601.166 kb on - strand, within DZA65_RS02785at 601.170 kb on - strand, within DZA65_RS02785at 601.244 kb on - strand, within DZA65_RS02785at 601.352 kb on + strand, within DZA65_RS02785at 601.375 kb on + strand, within DZA65_RS02785at 601.375 kb on + strand, within DZA65_RS02785at 601.375 kb on + strand, within DZA65_RS02785at 601.376 kb on - strand, within DZA65_RS02785at 601.376 kb on - strand, within DZA65_RS02785at 601.683 kb on + strandat 602.002 kb on - strand, within DZA65_RS02790at 602.092 kb on + strand, within DZA65_RS02790at 602.092 kb on + strand, within DZA65_RS02790at 602.109 kb on + strand, within DZA65_RS02790at 602.110 kb on - strand, within DZA65_RS02790at 602.217 kb on - strand, within DZA65_RS02790at 602.297 kb on - strand, within DZA65_RS02790at 602.370 kb on - strand, within DZA65_RS02790at 602.462 kb on - strand, within DZA65_RS02790at 602.513 kb on + strand, within DZA65_RS02790at 602.515 kb on + strand, within DZA65_RS02790at 602.516 kb on - strand, within DZA65_RS02790at 602.516 kb on - strand, within DZA65_RS02790

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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600,201 + -1.1
600,217 + -0.8
600,252 + -0.2
600,253 - +1.0
600,253 - +0.2
600,253 - -0.1
600,267 - -1.4
600,279 + +1.4
600,329 + DZA65_RS02785 0.11 +0.8
600,329 + DZA65_RS02785 0.11 -0.8
600,366 - DZA65_RS02785 0.14 -1.7
600,380 + DZA65_RS02785 0.15 +1.0
600,460 - DZA65_RS02785 0.21 -0.3
600,460 - DZA65_RS02785 0.21 +1.1
600,512 + DZA65_RS02785 0.24 +1.2
600,516 - DZA65_RS02785 0.25 +0.8
600,543 + DZA65_RS02785 0.27 +1.0
600,544 - DZA65_RS02785 0.27 -0.8
600,544 - DZA65_RS02785 0.27 -0.2
600,791 + DZA65_RS02785 0.45 -0.2
600,830 + -0.9
600,835 + DZA65_RS02785 0.48 +1.0
600,836 - DZA65_RS02785 0.48 +1.1
600,912 - DZA65_RS02785 0.54 -0.0
600,930 - DZA65_RS02785 0.55 -0.6
600,961 + DZA65_RS02785 0.57 -1.6
600,962 - DZA65_RS02785 0.57 -1.5
601,102 - DZA65_RS02785 0.68 +0.4
601,102 - DZA65_RS02785 0.68 +0.7
601,166 - DZA65_RS02785 0.72 -0.5
601,166 - DZA65_RS02785 0.72 +0.0
601,170 - DZA65_RS02785 0.73 +0.2
601,244 - DZA65_RS02785 0.78 +0.4
601,352 + DZA65_RS02785 0.86 -0.8
601,375 + DZA65_RS02785 0.88 -0.5
601,375 + DZA65_RS02785 0.88 +1.0
601,375 + DZA65_RS02785 0.88 -0.8
601,376 - DZA65_RS02785 0.88 +0.6
601,376 - DZA65_RS02785 0.88 -1.5
601,683 + -1.4
602,002 - DZA65_RS02790 0.34 +0.1
602,092 + DZA65_RS02790 0.43 -0.6
602,092 + DZA65_RS02790 0.43 -0.2
602,109 + DZA65_RS02790 0.45 -1.3
602,110 - DZA65_RS02790 0.45 -1.9
602,217 - DZA65_RS02790 0.56 +0.0
602,297 - DZA65_RS02790 0.65 -0.5
602,370 - DZA65_RS02790 0.73 -0.1
602,462 - DZA65_RS02790 0.82 -0.2
602,513 + DZA65_RS02790 0.88 -0.7
602,515 + DZA65_RS02790 0.88 +1.0
602,516 - DZA65_RS02790 0.88 -0.1
602,516 - DZA65_RS02790 0.88 +0.6

Or see this region's nucleotide sequence