Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02550 and DZA65_RS02555 are separated by 61 nucleotides DZA65_RS02555 and DZA65_RS02560 overlap by 4 nucleotides DZA65_RS02560 and DZA65_RS02565 are separated by 104 nucleotides DZA65_RS02565 and DZA65_RS02570 are separated by 73 nucleotides
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
DZA65_RS02555: DZA65_RS02555 - ABC transporter substrate-binding protein, at 549,363 to 550,304
_RS02555
DZA65_RS02560: DZA65_RS02560 - iron ABC transporter permease, at 550,301 to 551,299
_RS02560
DZA65_RS02565: DZA65_RS02565 - alkyl hydroperoxide reductase subunit C, at 551,404 to 551,967
_RS02565
DZA65_RS02570: DZA65_RS02570 - alkyl hydroperoxide reductase subunit F, at 552,041 to 553,603
_RS02570
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.314 kb on + strand at 549.314 kb on + strand at 549.315 kb on - strand at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.681 kb on + strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.745 kb on + strand, within DZA65_RS02555 at 549.746 kb on - strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.811 kb on - strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.962 kb on + strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.972 kb on - strand, within DZA65_RS02555 at 549.985 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.221 kb on + strand at 550.222 kb on - strand at 550.284 kb on + strand at 550.284 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.341 kb on + strand at 550.353 kb on + strand at 550.396 kb on + strand at 550.397 kb on - strand at 550.460 kb on + strand, within DZA65_RS02560 at 550.774 kb on + strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 551.298 kb on - strand at 551.302 kb on - strand at 551.319 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.418 kb on + strand at 551.419 kb on - strand at 551.419 kb on - strand at 551.421 kb on + strand at 551.518 kb on + strand, within DZA65_RS02565 at 551.532 kb on + strand, within DZA65_RS02565 at 551.533 kb on - strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.576 kb on - strand, within DZA65_RS02565 at 551.601 kb on - strand, within DZA65_RS02565 at 551.601 kb on - strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.635 kb on - strand, within DZA65_RS02565 at 551.635 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 552.035 kb on + strand at 552.040 kb on + strand at 552.040 kb on + strand at 552.040 kb on + strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.052 kb on + strand at 552.077 kb on + strand at 552.077 kb on + strand at 552.077 kb on + strand at 552.078 kb on - strand at 552.109 kb on - strand at 552.109 kb on - strand at 552.213 kb on + strand at 552.223 kb on + strand, within DZA65_RS02570 at 552.223 kb on + strand, within DZA65_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 549,310 + -0.5 549,310 + -0.3 549,310 + +1.4 549,310 + -0.9 549,310 + -0.4 549,310 + -0.0 549,310 + +0.1 549,310 + +1.6 549,310 + -1.1 549,310 + +0.6 549,310 + -0.1 549,310 + -0.1 549,310 + -0.1 549,310 + +0.1 549,310 + -0.3 549,311 - +0.3 549,311 - +0.0 549,311 - -1.0 549,311 - -0.3 549,311 - -0.4 549,311 - +0.0 549,311 - +0.1 549,311 - -0.9 549,311 - -0.9 549,311 - -0.1 549,311 - -0.8 549,311 - +0.3 549,311 - +0.3 549,311 - +0.2 549,314 + -2.4 549,314 + -0.3 549,315 - +0.3 549,621 + DZA65_RS02555 0.27 -0.6 549,621 + DZA65_RS02555 0.27 -0.7 549,621 + DZA65_RS02555 0.27 +1.4 549,622 - DZA65_RS02555 0.27 -0.7 549,622 - DZA65_RS02555 0.27 -0.6 549,681 + DZA65_RS02555 0.34 -0.9 549,682 - DZA65_RS02555 0.34 -0.0 549,682 - DZA65_RS02555 0.34 -0.6 549,682 - DZA65_RS02555 0.34 +0.6 549,682 - DZA65_RS02555 0.34 -0.1 549,682 - DZA65_RS02555 0.34 -0.4 549,682 - DZA65_RS02555 0.34 -1.0 549,682 - DZA65_RS02555 0.34 +0.2 549,682 - DZA65_RS02555 0.34 +0.4 549,729 + DZA65_RS02555 0.39 -0.3 549,729 + DZA65_RS02555 0.39 -0.9 549,729 + DZA65_RS02555 0.39 -0.5 549,730 - DZA65_RS02555 0.39 -0.4 549,730 - DZA65_RS02555 0.39 +1.0 549,745 + DZA65_RS02555 0.41 -0.1 549,746 - DZA65_RS02555 0.41 +0.4 549,764 + DZA65_RS02555 0.43 -0.4 549,764 + DZA65_RS02555 0.43 -1.2 549,764 + DZA65_RS02555 0.43 +0.9 549,764 + DZA65_RS02555 0.43 +0.1 549,765 - DZA65_RS02555 0.43 +0.3 549,765 - DZA65_RS02555 0.43 +1.2 549,765 - DZA65_RS02555 0.43 +0.4 549,765 - DZA65_RS02555 0.43 -0.3 549,805 + DZA65_RS02555 0.47 -0.2 549,805 + DZA65_RS02555 0.47 -0.7 549,805 + DZA65_RS02555 0.47 +0.4 549,805 + DZA65_RS02555 0.47 -0.7 549,805 + DZA65_RS02555 0.47 -1.0 549,806 - DZA65_RS02555 0.47 +1.0 549,806 - DZA65_RS02555 0.47 +0.8 549,806 - DZA65_RS02555 0.47 -0.6 549,806 - DZA65_RS02555 0.47 -0.9 549,806 - DZA65_RS02555 0.47 -0.1 549,806 - DZA65_RS02555 0.47 -0.4 549,806 - DZA65_RS02555 0.47 -0.0 549,806 - DZA65_RS02555 0.47 -1.6 549,806 - DZA65_RS02555 0.47 -0.0 549,811 - DZA65_RS02555 0.48 -0.7 549,937 + DZA65_RS02555 0.61 -0.6 549,937 + DZA65_RS02555 0.61 +1.0 549,937 + DZA65_RS02555 0.61 -1.9 549,937 + DZA65_RS02555 0.61 -0.9 549,937 + DZA65_RS02555 0.61 -0.6 549,938 - DZA65_RS02555 0.61 -0.3 549,938 - DZA65_RS02555 0.61 +0.7 549,938 - DZA65_RS02555 0.61 -1.4 549,938 - DZA65_RS02555 0.61 -0.6 549,938 - DZA65_RS02555 0.61 -0.7 549,945 + DZA65_RS02555 0.62 +1.1 549,945 + DZA65_RS02555 0.62 +1.4 549,946 - DZA65_RS02555 0.62 +2.3 549,946 - DZA65_RS02555 0.62 +0.4 549,962 + DZA65_RS02555 0.64 -1.9 549,963 - DZA65_RS02555 0.64 -0.8 549,963 - DZA65_RS02555 0.64 +0.4 549,963 - DZA65_RS02555 0.64 +1.1 549,972 - DZA65_RS02555 0.65 -0.5 549,985 - DZA65_RS02555 0.66 +0.1 550,207 - DZA65_RS02555 0.90 +0.1 550,207 - DZA65_RS02555 0.90 +0.1 550,207 - DZA65_RS02555 0.90 +0.2 550,221 + -0.9 550,222 - -2.6 550,284 + +0.2 550,284 + +0.5 550,319 + +0.6 550,319 + +0.9 550,319 + +0.0 550,320 - +1.8 550,320 - +0.4 550,320 - +1.2 550,320 - +0.7 550,320 - -0.2 550,341 + +0.3 550,353 + -0.3 550,396 + -0.3 550,397 - +1.2 550,460 + DZA65_RS02560 0.16 -0.6 550,774 + DZA65_RS02560 0.47 +2.0 550,775 - DZA65_RS02560 0.47 +0.9 550,775 - DZA65_RS02560 0.47 +1.8 550,805 + DZA65_RS02560 0.50 +0.5 550,805 + DZA65_RS02560 0.50 +0.4 550,805 + DZA65_RS02560 0.50 -0.5 550,805 + DZA65_RS02560 0.50 +0.3 550,805 + DZA65_RS02560 0.50 -0.1 550,805 + DZA65_RS02560 0.50 -0.4 550,806 - DZA65_RS02560 0.51 -0.6 550,806 - DZA65_RS02560 0.51 -0.1 551,298 - -0.6 551,302 - +1.4 551,319 + -0.4 551,341 + +0.2 551,341 + +0.9 551,341 + -1.1 551,341 + -1.1 551,341 + -1.8 551,341 + -0.3 551,342 - -0.1 551,342 - -1.7 551,342 - -1.4 551,342 - +0.3 551,342 - -0.5 551,342 - -1.4 551,342 - +0.1 551,361 + +1.0 551,361 + -1.0 551,361 + -1.0 551,361 + +0.1 551,361 + +0.9 551,362 - -0.6 551,362 - +0.0 551,362 - -0.1 551,362 - +0.5 551,362 - -0.6 551,362 - -0.2 551,362 - +0.6 551,382 + +0.1 551,382 + -1.1 551,382 + +0.2 551,382 + -0.4 551,383 - -0.3 551,383 - +0.7 551,383 - -0.0 551,383 - -0.3 551,383 - -0.3 551,389 + +0.2 551,389 + -0.5 551,389 + +0.9 551,389 + +0.7 551,389 + -0.7 551,389 + -0.3 551,389 + -0.8 551,389 + +0.2 551,390 - +0.1 551,390 - +0.3 551,390 - -0.4 551,390 - -1.3 551,390 - -1.4 551,390 - +0.5 551,418 + +1.7 551,419 - -0.4 551,419 - +0.0 551,421 + +0.2 551,518 + DZA65_RS02565 0.20 -1.4 551,532 + DZA65_RS02565 0.23 -0.1 551,533 - DZA65_RS02565 0.23 -0.6 551,575 + DZA65_RS02565 0.30 +0.3 551,575 + DZA65_RS02565 0.30 -0.4 551,575 + DZA65_RS02565 0.30 +0.4 551,576 - DZA65_RS02565 0.30 +0.6 551,601 - DZA65_RS02565 0.35 +0.3 551,601 - DZA65_RS02565 0.35 -1.6 551,608 + DZA65_RS02565 0.36 -0.9 551,608 + DZA65_RS02565 0.36 +0.2 551,608 + DZA65_RS02565 0.36 -1.3 551,609 - DZA65_RS02565 0.36 +1.1 551,609 - DZA65_RS02565 0.36 -0.7 551,609 - DZA65_RS02565 0.36 -0.6 551,609 - DZA65_RS02565 0.36 -1.2 551,609 - DZA65_RS02565 0.36 +0.4 551,609 - DZA65_RS02565 0.36 -2.8 551,609 - DZA65_RS02565 0.36 +0.0 551,634 + DZA65_RS02565 0.41 +1.1 551,634 + DZA65_RS02565 0.41 -2.0 551,634 + DZA65_RS02565 0.41 +1.4 551,634 + DZA65_RS02565 0.41 -2.4 551,635 - DZA65_RS02565 0.41 -1.3 551,635 - DZA65_RS02565 0.41 -0.3 551,684 - DZA65_RS02565 0.50 +0.6 551,684 - DZA65_RS02565 0.50 +0.4 551,684 - DZA65_RS02565 0.50 -0.0 551,872 + DZA65_RS02565 0.83 +0.4 551,872 + DZA65_RS02565 0.83 -0.1 551,872 + DZA65_RS02565 0.83 -0.1 551,872 + DZA65_RS02565 0.83 +0.6 551,873 - DZA65_RS02565 0.83 -0.5 551,873 - DZA65_RS02565 0.83 +0.1 551,873 - DZA65_RS02565 0.83 +0.6 551,873 - DZA65_RS02565 0.83 -0.6 551,873 - DZA65_RS02565 0.83 -1.0 551,873 - DZA65_RS02565 0.83 -0.4 552,035 + +0.1 552,040 + -0.7 552,040 + -1.1 552,040 + +2.4 552,041 - -0.2 552,041 - -1.8 552,041 - -0.8 552,041 - +0.6 552,052 + +0.4 552,077 + -1.3 552,077 + -0.2 552,077 + -0.6 552,078 - -0.6 552,109 - -1.4 552,109 - +0.7 552,213 + +2.4 552,223 + DZA65_RS02570 0.12 +0.4 552,223 + DZA65_RS02570 0.12 -0.8
Or see this region's nucleotide sequence