Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02480 and DZA65_RS02485 are separated by 71 nucleotides DZA65_RS02485 and DZA65_RS02490 are separated by 128 nucleotides
DZA65_RS02480: DZA65_RS02480 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 532,969 to 534,225
_RS02480
DZA65_RS02485: DZA65_RS02485 - DNA repair protein RadA, at 534,297 to 535,682
_RS02485
DZA65_RS02490: DZA65_RS02490 - phosphoserine phosphatase, at 535,811 to 536,788
_RS02490
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.426 kb on + strand at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.467 kb on - strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.574 kb on - strand, within DZA65_RS02480 at 533.616 kb on + strand at 533.616 kb on + strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.669 kb on + strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.699 kb on + strand, within DZA65_RS02480 at 533.700 kb on - strand, within DZA65_RS02480 at 533.829 kb on - strand, within DZA65_RS02480 at 533.905 kb on + strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.953 kb on + strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.981 kb on + strand, within DZA65_RS02480 at 533.981 kb on + strand, within DZA65_RS02480 at 533.982 kb on - strand, within DZA65_RS02480 at 533.982 kb on - strand, within DZA65_RS02480 at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.134 kb on + strand at 534.148 kb on - strand at 534.209 kb on + strand at 534.209 kb on + strand at 534.209 kb on + strand at 534.210 kb on - strand at 534.215 kb on + strand at 534.215 kb on + strand at 534.215 kb on + strand at 534.216 kb on - strand at 534.233 kb on + strand at 534.234 kb on - strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.266 kb on + strand at 534.266 kb on + strand at 534.266 kb on + strand at 534.267 kb on - strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.298 kb on + strand at 534.298 kb on + strand at 534.381 kb on - strand at 534.381 kb on - strand at 534.663 kb on - strand, within DZA65_RS02485 at 534.874 kb on - strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.972 kb on - strand, within DZA65_RS02485 at 534.972 kb on - strand at 535.072 kb on + strand, within DZA65_RS02485 at 535.073 kb on - strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.301 kb on - strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.572 kb on + strand at 535.572 kb on + strand at 535.572 kb on + strand at 535.573 kb on - strand at 535.649 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.723 kb on + strand at 535.739 kb on + strand at 535.740 kb on - strand at 535.755 kb on + strand at 535.755 kb on + strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.771 kb on + strand at 535.771 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.921 kb on - strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.161 kb on - strand, within DZA65_RS02490 at 536.407 kb on + strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.566 kb on - strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 533,426 + +1.5 533,426 + DZA65_RS02480 0.36 -1.1 533,426 + DZA65_RS02480 0.36 -0.0 533,426 + DZA65_RS02480 0.36 -0.4 533,426 + DZA65_RS02480 0.36 +0.5 533,426 + DZA65_RS02480 0.36 +1.0 533,427 - DZA65_RS02480 0.36 +0.5 533,427 - DZA65_RS02480 0.36 +0.3 533,427 - DZA65_RS02480 0.36 +0.1 533,427 - DZA65_RS02480 0.36 -1.3 533,439 - DZA65_RS02480 0.37 +1.5 533,439 - DZA65_RS02480 0.37 +0.8 533,467 - DZA65_RS02480 0.40 +0.1 533,562 + DZA65_RS02480 0.47 -1.1 533,562 + DZA65_RS02480 0.47 +0.9 533,562 + DZA65_RS02480 0.47 +0.6 533,562 + DZA65_RS02480 0.47 -0.3 533,562 + DZA65_RS02480 0.47 -0.7 533,562 + DZA65_RS02480 0.47 +0.5 533,562 + DZA65_RS02480 0.47 +0.2 533,562 + DZA65_RS02480 0.47 -1.9 533,562 + DZA65_RS02480 0.47 -0.1 533,563 - DZA65_RS02480 0.47 +1.9 533,563 - -0.5 533,563 - DZA65_RS02480 0.47 +0.6 533,563 - DZA65_RS02480 0.47 +1.8 533,563 - DZA65_RS02480 0.47 -0.0 533,563 - DZA65_RS02480 0.47 +0.2 533,563 - DZA65_RS02480 0.47 -0.5 533,563 - DZA65_RS02480 0.47 +0.2 533,563 - DZA65_RS02480 0.47 -0.5 533,563 - DZA65_RS02480 0.47 -1.2 533,564 + DZA65_RS02480 0.47 +0.5 533,564 + DZA65_RS02480 0.47 +1.1 533,564 + DZA65_RS02480 0.47 -1.2 533,564 + DZA65_RS02480 0.47 +0.0 533,564 + DZA65_RS02480 0.47 +0.7 533,564 + DZA65_RS02480 0.47 +0.9 533,565 - DZA65_RS02480 0.47 +0.5 533,565 - DZA65_RS02480 0.47 -0.2 533,565 - DZA65_RS02480 0.47 -1.9 533,565 - DZA65_RS02480 0.47 -0.2 533,565 - DZA65_RS02480 0.47 +0.1 533,565 - DZA65_RS02480 0.47 -0.0 533,565 - DZA65_RS02480 0.47 +0.7 533,565 - DZA65_RS02480 0.47 -1.1 533,574 - DZA65_RS02480 0.48 +0.5 533,616 + +0.5 533,616 + DZA65_RS02480 0.51 -0.4 533,617 - DZA65_RS02480 0.52 -0.0 533,617 - DZA65_RS02480 0.52 +0.1 533,617 - DZA65_RS02480 0.52 +0.6 533,669 + DZA65_RS02480 0.56 -0.4 533,670 - DZA65_RS02480 0.56 -0.2 533,670 - DZA65_RS02480 0.56 +0.5 533,670 - DZA65_RS02480 0.56 -0.1 533,670 - DZA65_RS02480 0.56 +0.3 533,699 + DZA65_RS02480 0.58 +0.2 533,700 - DZA65_RS02480 0.58 -0.2 533,829 - DZA65_RS02480 0.68 -0.8 533,905 + DZA65_RS02480 0.74 -0.9 533,906 - DZA65_RS02480 0.75 -0.1 533,906 - DZA65_RS02480 0.75 -0.6 533,953 + DZA65_RS02480 0.78 +1.0 533,954 - DZA65_RS02480 0.78 +0.5 533,954 - DZA65_RS02480 0.78 -1.1 533,981 + DZA65_RS02480 0.81 +0.2 533,981 + DZA65_RS02480 0.81 +0.6 533,982 - DZA65_RS02480 0.81 -1.5 533,982 - DZA65_RS02480 0.81 -0.5 534,130 + +1.9 534,130 + +0.9 534,130 + -0.7 534,130 + -0.0 534,130 + -0.8 534,130 + -0.4 534,131 - -0.7 534,131 - -0.9 534,131 - +0.5 534,131 - -0.1 534,134 + -0.2 534,148 - +0.5 534,209 + -0.5 534,209 + +0.1 534,209 + -0.7 534,210 - +0.3 534,215 + +0.2 534,215 + +2.5 534,215 + +1.5 534,216 - +1.3 534,233 + +1.2 534,234 - +1.5 534,263 + -0.5 534,263 + -1.0 534,263 + +0.1 534,263 + +0.7 534,263 + +0.5 534,263 + +0.9 534,264 - -0.5 534,264 - -0.0 534,264 - +0.4 534,264 - +0.8 534,264 - +0.6 534,264 - +0.7 534,264 - +0.1 534,266 + -0.5 534,266 + +1.3 534,266 + -1.9 534,267 - -0.5 534,281 + -0.5 534,281 + +0.1 534,281 + -0.1 534,281 + +0.5 534,281 + -2.2 534,281 + -0.2 534,281 + -1.0 534,282 - +0.5 534,282 - +0.4 534,282 - +0.8 534,282 - +0.2 534,282 - -0.5 534,282 - +0.1 534,298 + -0.1 534,298 + -0.5 534,381 - -1.0 534,381 - +0.9 534,663 - DZA65_RS02485 0.26 -0.8 534,874 - DZA65_RS02485 0.42 -0.2 534,971 + DZA65_RS02485 0.49 -0.9 534,971 + DZA65_RS02485 0.49 +0.3 534,971 + DZA65_RS02485 0.49 -0.3 534,972 - DZA65_RS02485 0.49 -0.5 534,972 - -0.5 535,072 + DZA65_RS02485 0.56 -0.1 535,073 - DZA65_RS02485 0.56 -2.4 535,229 + DZA65_RS02485 0.67 +1.5 535,229 + DZA65_RS02485 0.67 -2.2 535,230 - DZA65_RS02485 0.67 +2.0 535,230 - DZA65_RS02485 0.67 -0.1 535,230 - DZA65_RS02485 0.67 -0.4 535,300 + DZA65_RS02485 0.72 -0.5 535,300 + DZA65_RS02485 0.72 +1.2 535,301 - DZA65_RS02485 0.72 -0.5 535,347 + DZA65_RS02485 0.76 -0.7 535,347 + DZA65_RS02485 0.76 -0.5 535,348 - DZA65_RS02485 0.76 -0.9 535,348 - DZA65_RS02485 0.76 -1.4 535,572 + +0.1 535,572 + -1.5 535,572 + +0.6 535,573 - -0.1 535,649 + +0.1 535,687 + -1.4 535,687 + +1.5 535,687 + +0.5 535,687 + -0.1 535,687 + -0.5 535,687 + +0.8 535,688 - +1.2 535,688 - -1.1 535,688 - -0.5 535,698 + +0.0 535,698 + +0.4 535,698 + +0.1 535,707 + +0.1 535,707 + +0.2 535,707 + +0.5 535,707 + +0.5 535,707 + -0.1 535,708 - +0.2 535,708 - -0.7 535,708 - +0.5 535,710 + +1.7 535,710 + +0.5 535,710 + +0.1 535,711 - +1.5 535,711 - -1.0 535,711 - +0.5 535,711 - -1.1 535,711 - -0.0 535,711 - -1.4 535,723 + -0.6 535,739 + +1.5 535,740 - +0.6 535,755 + -0.2 535,755 + -0.1 535,756 - -0.9 535,756 - -0.4 535,756 - +0.1 535,756 - +1.1 535,758 + +0.9 535,758 + +0.1 535,758 + -1.9 535,758 + -0.0 535,758 + +0.0 535,759 - +0.1 535,759 - -0.5 535,759 - -0.8 535,759 - +0.6 535,759 - -0.2 535,759 - -0.2 535,759 - -0.3 535,759 - -0.2 535,759 - -0.9 535,759 - +0.3 535,771 + -0.4 535,771 + +0.1 535,774 + -0.9 535,774 + -2.0 535,774 + -0.1 535,774 + +0.1 535,774 + -0.1 535,774 + -0.2 535,774 + -0.4 535,774 + +0.7 535,775 - +0.2 535,775 - +0.1 535,775 - -0.1 535,775 - +0.2 535,775 - -0.4 535,775 - +0.7 535,775 - +0.6 535,775 - -1.2 535,775 - -0.7 535,775 - -0.5 535,775 - +0.0 535,921 - DZA65_RS02490 0.11 -1.0 536,041 + DZA65_RS02490 0.24 +1.0 536,041 + DZA65_RS02490 0.24 -0.3 536,042 - DZA65_RS02490 0.24 +0.2 536,042 - DZA65_RS02490 0.24 -0.5 536,043 + DZA65_RS02490 0.24 -1.1 536,043 + DZA65_RS02490 0.24 -0.5 536,043 + DZA65_RS02490 0.24 -0.1 536,044 - DZA65_RS02490 0.24 +1.3 536,044 - DZA65_RS02490 0.24 +0.9 536,044 - DZA65_RS02490 0.24 +1.0 536,044 - DZA65_RS02490 0.24 -1.0 536,160 + DZA65_RS02490 0.36 -0.5 536,160 + DZA65_RS02490 0.36 -1.4 536,161 - DZA65_RS02490 0.36 -0.1 536,407 + DZA65_RS02490 0.61 -0.1 536,408 - DZA65_RS02490 0.61 -3.1 536,408 - DZA65_RS02490 0.61 +1.5 536,408 - DZA65_RS02490 0.61 +0.2 536,408 - DZA65_RS02490 0.61 -1.1 536,481 + DZA65_RS02490 0.69 -0.4 536,481 + DZA65_RS02490 0.69 -1.9 536,482 - DZA65_RS02490 0.69 -0.1 536,482 - DZA65_RS02490 0.69 +0.1 536,482 - DZA65_RS02490 0.69 +0.5 536,566 - DZA65_RS02490 0.77 -0.4 536,637 + DZA65_RS02490 0.84 -0.1 536,637 + DZA65_RS02490 0.84 -0.1 536,637 + DZA65_RS02490 0.84 +0.4 536,637 + DZA65_RS02490 0.84 -0.4 536,637 + DZA65_RS02490 0.84 -0.5 536,637 + DZA65_RS02490 0.84 +0.3 536,638 - DZA65_RS02490 0.85 +0.1 536,638 - DZA65_RS02490 0.85 -0.1 536,638 - DZA65_RS02490 0.85 -0.1 536,638 - DZA65_RS02490 0.85 +0.2 536,638 - DZA65_RS02490 0.85 +0.1 536,638 - DZA65_RS02490 0.85 -0.4 536,638 - DZA65_RS02490 0.85 -1.0 536,638 - DZA65_RS02490 0.85 +0.0 536,638 - DZA65_RS02490 0.85 +0.0 536,658 + DZA65_RS02490 0.87 -1.5 536,658 + DZA65_RS02490 0.87 -1.2 536,659 - DZA65_RS02490 0.87 -0.2 536,659 - DZA65_RS02490 0.87 -0.5 536,659 - DZA65_RS02490 0.87 -0.4 536,659 - DZA65_RS02490 0.87 +0.1 536,659 - DZA65_RS02490 0.87 -1.8 536,659 - DZA65_RS02490 0.87 -0.7
Or see this region's nucleotide sequence