Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02375 and DZA65_RS02380 are separated by 132 nucleotides DZA65_RS02380 and DZA65_RS02385 are separated by 73 nucleotides
DZA65_RS02375: DZA65_RS02375 - HD domain-containing protein, at 512,595 to 513,305
_RS02375
DZA65_RS02380: DZA65_RS02380 - IclR family transcriptional regulator, at 513,438 to 514,244
_RS02380
DZA65_RS02385: DZA65_RS02385 - chemotaxis protein, at 514,318 to 515,907
_RS02385
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 512.492 kb on + strand at 512.493 kb on - strand at 512.507 kb on + strand at 512.551 kb on - strand at 512.551 kb on - strand at 512.554 kb on + strand at 512.554 kb on + strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.555 kb on - strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.569 kb on + strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.570 kb on - strand at 512.602 kb on + strand at 512.602 kb on + strand at 512.624 kb on + strand at 512.625 kb on - strand at 512.625 kb on - strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.631 kb on + strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.632 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.636 kb on - strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.884 kb on + strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.885 kb on - strand, within DZA65_RS02375 at 512.933 kb on + strand, within DZA65_RS02375 at 512.936 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.021 kb on + strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.022 kb on - strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.102 kb on + strand, within DZA65_RS02375 at 513.103 kb on - strand, within DZA65_RS02375 at 513.167 kb on + strand, within DZA65_RS02375 at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.350 kb on + strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.351 kb on - strand at 513.359 kb on + strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.360 kb on - strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.383 kb on + strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.384 kb on - strand at 513.399 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.464 kb on + strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.465 kb on - strand at 513.514 kb on + strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.515 kb on - strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.517 kb on + strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.518 kb on - strand at 513.525 kb on + strand, within DZA65_RS02380 at 513.526 kb on - strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.651 kb on + strand, within DZA65_RS02380 at 513.792 kb on + strand, within DZA65_RS02380 at 513.793 kb on - strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.830 kb on + strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.831 kb on - strand, within DZA65_RS02380 at 513.849 kb on + strand at 513.849 kb on + strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.850 kb on - strand, within DZA65_RS02380 at 513.975 kb on + strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.976 kb on - strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.977 kb on + strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.978 kb on - strand, within DZA65_RS02380 at 513.983 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.090 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.116 kb on + strand, within DZA65_RS02380 at 514.117 kb on - strand, within DZA65_RS02380 at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.242 kb on + strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.243 kb on - strand at 514.246 kb on + strand at 514.247 kb on - strand at 514.247 kb on - strand at 514.247 kb on - strand at 514.326 kb on + strand at 514.326 kb on + strand at 514.628 kb on - strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.632 kb on + strand, within DZA65_RS02385 at 514.633 kb on - strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.809 kb on + strand, within DZA65_RS02385 at 514.810 kb on - strand, within DZA65_RS02385 at 514.810 kb on - strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.812 kb on + strand, within DZA65_RS02385 at 514.813 kb on - strand, within DZA65_RS02385 at 514.813 kb on - strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.851 kb on + strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 514.852 kb on - strand, within DZA65_RS02385 at 515.089 kb on + strand, within DZA65_RS02385 at 515.089 kb on + strand, within DZA65_RS02385 at 515.090 kb on - strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.127 kb on + strand, within DZA65_RS02385 at 515.128 kb on - strand, within DZA65_RS02385 at 515.128 kb on - strand, within DZA65_RS02385 at 515.129 kb on + strand at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.129 kb on + strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.130 kb on - strand, within DZA65_RS02385 at 515.177 kb on - strand, within DZA65_RS02385 at 515.177 kb on - strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.184 kb on + strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.185 kb on - strand, within DZA65_RS02385 at 515.228 kb on + strand, within DZA65_RS02385 at 515.228 kb on + strand, within DZA65_RS02385
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 512,492 + +0.5 512,493 - +0.4 512,507 + -0.1 512,551 - +0.2 512,551 - +0.1 512,554 + -0.5 512,554 + +0.1 512,555 - -0.5 512,555 - +0.5 512,555 - -0.0 512,569 + -1.3 512,569 + -0.2 512,569 + -0.6 512,569 + -0.5 512,569 + -0.9 512,569 + +1.0 512,569 + +0.9 512,569 + +0.9 512,570 - +0.1 512,570 - -0.3 512,570 - +1.5 512,570 - -1.1 512,570 - -0.2 512,570 - +0.0 512,570 - +0.2 512,570 - +1.0 512,570 - +0.5 512,570 - -1.3 512,602 + -0.7 512,602 + -0.2 512,624 + +0.9 512,625 - +0.9 512,625 - +0.3 512,631 + -1.1 512,631 + -0.5 512,631 + -0.8 512,631 + +0.1 512,632 - +0.0 512,632 - -0.2 512,632 - -0.7 512,632 - +2.2 512,632 - -0.9 512,636 - -0.7 512,636 - -0.0 512,636 - -0.7 512,884 + DZA65_RS02375 0.41 +0.2 512,884 + DZA65_RS02375 0.41 -0.1 512,884 + +1.5 512,884 + DZA65_RS02375 0.41 -0.1 512,884 + DZA65_RS02375 0.41 -1.1 512,884 + DZA65_RS02375 0.41 +0.0 512,884 + DZA65_RS02375 0.41 +0.6 512,885 - DZA65_RS02375 0.41 -0.4 512,885 - DZA65_RS02375 0.41 +0.5 512,933 + DZA65_RS02375 0.48 -0.7 512,936 + DZA65_RS02375 0.48 +0.5 513,021 + DZA65_RS02375 0.60 -2.1 513,021 + DZA65_RS02375 0.60 -0.5 513,021 + DZA65_RS02375 0.60 -0.9 513,022 - DZA65_RS02375 0.60 -0.9 513,022 - -0.1 513,022 - DZA65_RS02375 0.60 -0.9 513,022 - DZA65_RS02375 0.60 +0.7 513,022 - DZA65_RS02375 0.60 +1.2 513,102 + DZA65_RS02375 0.71 +0.2 513,102 + DZA65_RS02375 0.71 +0.0 513,103 - DZA65_RS02375 0.71 +0.5 513,167 + DZA65_RS02375 0.80 -0.1 513,350 + +2.8 513,350 + -2.2 513,350 + -1.8 513,350 + +0.7 513,350 + -0.9 513,350 + +0.7 513,351 - +0.1 513,351 - -1.0 513,351 - +0.1 513,351 - -0.8 513,359 + -0.6 513,360 - +1.7 513,360 - -0.5 513,360 - -1.5 513,360 - +0.3 513,360 - -0.8 513,360 - +0.0 513,383 + -0.9 513,383 + -0.9 513,383 + -2.9 513,384 - -0.9 513,384 - -1.3 513,384 - +0.3 513,384 - +0.1 513,384 - -0.2 513,384 - -0.3 513,384 - +0.3 513,384 - -0.5 513,399 + -0.6 513,464 + +0.0 513,464 + -0.3 513,464 + +0.9 513,464 + +0.7 513,465 - -0.1 513,465 - +0.1 513,465 - -0.5 513,465 - +0.9 513,514 + +0.4 513,515 - -0.1 513,515 - -0.5 513,515 - -0.7 513,517 + -0.1 513,517 + -0.3 513,517 + +0.9 513,517 + -1.5 513,517 + -0.2 513,517 + +0.1 513,517 + +1.0 513,517 + +1.0 513,518 - -1.2 513,518 - +0.5 513,518 - +1.9 513,518 - -0.3 513,518 - -0.5 513,518 - -0.5 513,518 - +0.7 513,518 - +0.6 513,525 + DZA65_RS02380 0.11 -0.1 513,526 - DZA65_RS02380 0.11 -0.7 513,651 + DZA65_RS02380 0.26 -0.1 513,651 + DZA65_RS02380 0.26 -0.1 513,651 + DZA65_RS02380 0.26 +0.6 513,792 + DZA65_RS02380 0.44 +0.9 513,793 - DZA65_RS02380 0.44 -0.3 513,830 + DZA65_RS02380 0.49 -0.4 513,830 + DZA65_RS02380 0.49 -0.3 513,830 + DZA65_RS02380 0.49 +0.1 513,831 - DZA65_RS02380 0.49 -0.0 513,831 - DZA65_RS02380 0.49 -0.0 513,831 - DZA65_RS02380 0.49 +0.8 513,849 + +0.9 513,849 + DZA65_RS02380 0.51 -0.0 513,850 - DZA65_RS02380 0.51 -0.4 513,850 - DZA65_RS02380 0.51 +2.0 513,975 + DZA65_RS02380 0.67 +1.0 513,976 - DZA65_RS02380 0.67 +0.0 513,976 - DZA65_RS02380 0.67 +0.0 513,977 + DZA65_RS02380 0.67 +0.1 513,977 + DZA65_RS02380 0.67 +0.1 513,978 - DZA65_RS02380 0.67 -0.4 513,978 - DZA65_RS02380 0.67 +0.5 513,978 - DZA65_RS02380 0.67 +1.2 513,983 + DZA65_RS02380 0.68 -0.4 514,090 + DZA65_RS02380 0.81 -0.5 514,090 + DZA65_RS02380 0.81 -0.1 514,116 + DZA65_RS02380 0.84 -0.4 514,116 + DZA65_RS02380 0.84 -0.3 514,116 + DZA65_RS02380 0.84 -0.3 514,117 - DZA65_RS02380 0.84 +0.1 514,242 + +0.7 514,242 + -0.7 514,242 + +1.0 514,242 + -0.7 514,242 + +0.1 514,242 + -0.6 514,242 + +1.2 514,242 + -2.3 514,242 + +0.2 514,242 + +0.8 514,242 + +0.5 514,243 - +1.5 514,243 - +0.7 514,243 - +0.0 514,243 - -0.9 514,243 - +0.0 514,243 - +0.6 514,243 - +1.5 514,246 + +0.5 514,247 - +1.2 514,247 - -1.3 514,247 - -0.9 514,326 + -0.9 514,326 + +0.2 514,628 - DZA65_RS02385 0.19 -1.3 514,632 + DZA65_RS02385 0.20 -1.7 514,632 + DZA65_RS02385 0.20 -0.7 514,632 + DZA65_RS02385 0.20 -1.1 514,632 + DZA65_RS02385 0.20 -0.8 514,632 + DZA65_RS02385 0.20 -0.5 514,633 - DZA65_RS02385 0.20 +0.1 514,809 + DZA65_RS02385 0.31 +0.6 514,809 + DZA65_RS02385 0.31 -0.4 514,809 + DZA65_RS02385 0.31 +0.5 514,809 + DZA65_RS02385 0.31 -0.5 514,809 + DZA65_RS02385 0.31 -0.5 514,810 - DZA65_RS02385 0.31 -2.1 514,810 - DZA65_RS02385 0.31 -0.3 514,812 + DZA65_RS02385 0.31 +0.3 514,812 + DZA65_RS02385 0.31 +2.0 514,812 + DZA65_RS02385 0.31 +0.0 514,812 + DZA65_RS02385 0.31 +0.0 514,812 + DZA65_RS02385 0.31 -0.8 514,813 - DZA65_RS02385 0.31 +0.5 514,813 - DZA65_RS02385 0.31 -0.2 514,851 + DZA65_RS02385 0.34 +1.2 514,851 + DZA65_RS02385 0.34 +0.8 514,851 + DZA65_RS02385 0.34 +0.7 514,851 + DZA65_RS02385 0.34 -0.1 514,851 + DZA65_RS02385 0.34 -0.7 514,851 + DZA65_RS02385 0.34 -1.0 514,851 + DZA65_RS02385 0.34 -1.0 514,852 - DZA65_RS02385 0.34 +0.1 514,852 - DZA65_RS02385 0.34 -0.0 514,852 - DZA65_RS02385 0.34 +0.2 514,852 - DZA65_RS02385 0.34 +0.2 514,852 - DZA65_RS02385 0.34 -1.7 514,852 - DZA65_RS02385 0.34 +1.0 514,852 - DZA65_RS02385 0.34 +0.2 515,089 + DZA65_RS02385 0.48 +1.2 515,089 + DZA65_RS02385 0.48 +0.9 515,090 - DZA65_RS02385 0.49 +1.0 515,127 + DZA65_RS02385 0.51 +0.2 515,127 + DZA65_RS02385 0.51 -0.5 515,127 + DZA65_RS02385 0.51 +0.8 515,127 + DZA65_RS02385 0.51 -0.1 515,128 - DZA65_RS02385 0.51 +0.5 515,128 - DZA65_RS02385 0.51 -1.9 515,129 + +1.5 515,129 + DZA65_RS02385 0.51 -0.7 515,129 + DZA65_RS02385 0.51 -1.3 515,129 + DZA65_RS02385 0.51 +0.2 515,129 + DZA65_RS02385 0.51 +1.0 515,129 + DZA65_RS02385 0.51 -0.2 515,129 + DZA65_RS02385 0.51 -0.9 515,129 + DZA65_RS02385 0.51 +0.2 515,129 + DZA65_RS02385 0.51 +0.7 515,129 + DZA65_RS02385 0.51 +0.3 515,129 + DZA65_RS02385 0.51 -1.1 515,129 + DZA65_RS02385 0.51 +0.2 515,130 - DZA65_RS02385 0.51 -1.4 515,130 - DZA65_RS02385 0.51 -0.3 515,130 - DZA65_RS02385 0.51 -0.7 515,130 - DZA65_RS02385 0.51 +0.0 515,130 - DZA65_RS02385 0.51 -1.3 515,130 - DZA65_RS02385 0.51 +0.2 515,130 - DZA65_RS02385 0.51 +0.3 515,130 - DZA65_RS02385 0.51 -0.7 515,130 - DZA65_RS02385 0.51 +0.5 515,130 - DZA65_RS02385 0.51 -0.9 515,130 - DZA65_RS02385 0.51 -0.5 515,130 - DZA65_RS02385 0.51 +1.3 515,130 - DZA65_RS02385 0.51 -0.0 515,130 - DZA65_RS02385 0.51 -0.2 515,130 - DZA65_RS02385 0.51 +0.6 515,130 - DZA65_RS02385 0.51 +0.4 515,130 - DZA65_RS02385 0.51 -1.0 515,130 - DZA65_RS02385 0.51 -0.0 515,130 - DZA65_RS02385 0.51 -0.4 515,130 - DZA65_RS02385 0.51 +1.0 515,130 - DZA65_RS02385 0.51 -0.6 515,177 - DZA65_RS02385 0.54 +0.1 515,177 - DZA65_RS02385 0.54 +0.5 515,184 + DZA65_RS02385 0.54 +0.6 515,184 + DZA65_RS02385 0.54 +1.0 515,184 + DZA65_RS02385 0.54 +2.5 515,184 + DZA65_RS02385 0.54 -0.3 515,184 + DZA65_RS02385 0.54 -0.7 515,185 - DZA65_RS02385 0.55 -0.8 515,185 - DZA65_RS02385 0.55 -1.5 515,185 - DZA65_RS02385 0.55 -0.1 515,185 - DZA65_RS02385 0.55 +0.1 515,228 + DZA65_RS02385 0.57 +0.7 515,228 + DZA65_RS02385 0.57 -0.3
Or see this region's nucleotide sequence