Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01975

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS01970 and DZA65_RS01975 are separated by 411 nucleotidesDZA65_RS01975 and DZA65_RS01980 are separated by 231 nucleotides DZA65_RS01970: DZA65_RS01970 - aspartate carbamoyltransferase, at 433,285 to 434,220 _RS01970 DZA65_RS01975: DZA65_RS01975 - YhcH/YjgK/YiaL family protein, at 434,632 to 435,099 _RS01975 DZA65_RS01980: DZA65_RS01980 - 6-phospho-beta-glucosidase, at 435,331 to 436,767 _RS01980 Position (kb) 434 435 436Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.659 kb on + strand, within DZA65_RS01970at 433.659 kb on + strand, within DZA65_RS01970at 433.659 kb on + strand, within DZA65_RS01970at 433.660 kb on - strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.664 kb on + strand, within DZA65_RS01970at 433.665 kb on - strand, within DZA65_RS01970at 433.665 kb on - strand, within DZA65_RS01970at 433.665 kb on - strand, within DZA65_RS01970at 433.665 kb on - strand, within DZA65_RS01970at 433.665 kb on - strand, within DZA65_RS01970at 433.711 kb on + strand, within DZA65_RS01970at 433.711 kb on + strand, within DZA65_RS01970at 433.712 kb on - strand, within DZA65_RS01970at 433.712 kb on - strand, within DZA65_RS01970at 433.724 kb on + strand, within DZA65_RS01970at 433.743 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.925 kb on + strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strandat 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 433.926 kb on - strand, within DZA65_RS01970at 434.202 kb on + strandat 434.202 kb on + strandat 434.202 kb on + strandat 434.202 kb on + strandat 434.202 kb on + strandat 434.202 kb on + strandat 434.203 kb on - strandat 434.203 kb on - strandat 434.203 kb on - strandat 434.203 kb on - strandat 434.203 kb on - strandat 434.203 kb on - strandat 434.204 kb on + strandat 434.204 kb on + strandat 434.204 kb on + strandat 434.205 kb on - strandat 434.205 kb on - strandat 434.206 kb on + strandat 434.206 kb on + strandat 434.207 kb on - strandat 434.207 kb on - strandat 434.207 kb on - strandat 434.226 kb on + strandat 434.227 kb on - strandat 434.227 kb on - strandat 434.261 kb on + strandat 434.261 kb on + strandat 434.433 kb on - strandat 434.434 kb on + strandat 434.434 kb on + strandat 434.435 kb on - strandat 434.548 kb on - strandat 434.584 kb on - strandat 434.585 kb on + strandat 434.671 kb on + strandat 434.704 kb on + strand, within DZA65_RS01975at 434.704 kb on + strand, within DZA65_RS01975at 434.705 kb on - strand, within DZA65_RS01975at 434.705 kb on - strand, within DZA65_RS01975at 434.705 kb on - strand, within DZA65_RS01975at 434.708 kb on + strand, within DZA65_RS01975at 434.708 kb on + strand, within DZA65_RS01975at 434.709 kb on - strand, within DZA65_RS01975at 434.709 kb on - strand, within DZA65_RS01975at 434.709 kb on - strand, within DZA65_RS01975at 434.709 kb on - strand, within DZA65_RS01975at 434.718 kb on + strand, within DZA65_RS01975at 434.719 kb on - strand, within DZA65_RS01975at 434.719 kb on - strand, within DZA65_RS01975at 434.719 kb on - strand, within DZA65_RS01975at 434.719 kb on - strand, within DZA65_RS01975at 434.719 kb on - strand, within DZA65_RS01975at 434.763 kb on + strand, within DZA65_RS01975at 434.763 kb on + strand, within DZA65_RS01975at 434.763 kb on + strand, within DZA65_RS01975at 434.763 kb on + strand, within DZA65_RS01975at 434.763 kb on + strand, within DZA65_RS01975at 434.764 kb on - strand, within DZA65_RS01975at 434.764 kb on - strand, within DZA65_RS01975at 434.824 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.836 kb on + strand, within DZA65_RS01975at 434.837 kb on - strand, within DZA65_RS01975at 434.902 kb on - strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.017 kb on + strand, within DZA65_RS01975at 435.018 kb on - strand, within DZA65_RS01975at 435.021 kb on + strandat 435.021 kb on + strand, within DZA65_RS01975at 435.021 kb on + strand, within DZA65_RS01975at 435.021 kb on + strand, within DZA65_RS01975at 435.021 kb on + strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.022 kb on - strand, within DZA65_RS01975at 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.056 kb on + strandat 435.057 kb on - strandat 435.057 kb on - strandat 435.057 kb on - strandat 435.060 kb on + strandat 435.060 kb on + strandat 435.060 kb on + strandat 435.097 kb on + strandat 435.097 kb on + strandat 435.097 kb on + strandat 435.097 kb on + strandat 435.098 kb on - strandat 435.098 kb on - strandat 435.098 kb on - strandat 435.121 kb on + strandat 435.122 kb on - strandat 435.122 kb on - strandat 435.122 kb on - strandat 435.122 kb on - strandat 435.125 kb on + strandat 435.125 kb on + strandat 435.125 kb on + strandat 435.125 kb on + strandat 435.126 kb on - strandat 435.126 kb on - strandat 435.126 kb on - strandat 435.132 kb on - strandat 435.132 kb on - strandat 435.132 kb on - strandat 435.216 kb on + strandat 435.282 kb on - strandat 435.330 kb on + strandat 435.330 kb on + strandat 435.330 kb on + strandat 435.330 kb on + strandat 435.331 kb on - strandat 435.331 kb on - strandat 435.526 kb on + strand, within DZA65_RS01980at 435.527 kb on - strand, within DZA65_RS01980at 435.527 kb on - strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.535 kb on + strand, within DZA65_RS01980at 435.536 kb on - strand, within DZA65_RS01980at 435.536 kb on - strand, within DZA65_RS01980at 435.537 kb on + strand, within DZA65_RS01980at 435.537 kb on + strand, within DZA65_RS01980at 435.538 kb on - strand, within DZA65_RS01980at 435.538 kb on - strand, within DZA65_RS01980at 435.538 kb on - strand, within DZA65_RS01980at 435.606 kb on + strand, within DZA65_RS01980at 435.606 kb on + strandat 435.607 kb on - strand, within DZA65_RS01980at 435.658 kb on + strand, within DZA65_RS01980at 435.751 kb on + strand, within DZA65_RS01980at 435.752 kb on - strand, within DZA65_RS01980at 435.820 kb on + strand, within DZA65_RS01980at 435.838 kb on + strand, within DZA65_RS01980at 435.838 kb on + strand, within DZA65_RS01980at 435.838 kb on + strand, within DZA65_RS01980at 435.839 kb on - strand, within DZA65_RS01980at 435.839 kb on - strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.952 kb on + strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 435.953 kb on - strand, within DZA65_RS01980at 436.057 kb on + strand, within DZA65_RS01980at 436.057 kb on + strand, within DZA65_RS01980at 436.057 kb on + strand, within DZA65_RS01980at 436.057 kb on + strand, within DZA65_RS01980at 436.057 kb on + strand, within DZA65_RS01980at 436.058 kb on - strand, within DZA65_RS01980at 436.058 kb on - strand, within DZA65_RS01980at 436.060 kb on + strand, within DZA65_RS01980at 436.060 kb on + strand, within DZA65_RS01980at 436.060 kb on + strand, within DZA65_RS01980at 436.060 kb on + strand, within DZA65_RS01980at 436.061 kb on - strand, within DZA65_RS01980at 436.061 kb on - strand, within DZA65_RS01980at 436.061 kb on - strand, within DZA65_RS01980at 436.066 kb on + strand, within DZA65_RS01980at 436.066 kb on + strand, within DZA65_RS01980at 436.067 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
433,659 + DZA65_RS01970 0.40 +0.6
433,659 + DZA65_RS01970 0.40 +0.5
433,659 + DZA65_RS01970 0.40 -0.3
433,660 - DZA65_RS01970 0.40 -1.7
433,664 + DZA65_RS01970 0.40 -0.6
433,664 + DZA65_RS01970 0.40 +0.7
433,664 + DZA65_RS01970 0.40 -0.1
433,664 + DZA65_RS01970 0.40 -0.3
433,664 + DZA65_RS01970 0.40 -0.0
433,664 + DZA65_RS01970 0.40 +0.6
433,664 + DZA65_RS01970 0.40 -0.9
433,664 + DZA65_RS01970 0.40 -2.0
433,665 - DZA65_RS01970 0.41 +1.0
433,665 - DZA65_RS01970 0.41 -0.1
433,665 - DZA65_RS01970 0.41 -0.3
433,665 - DZA65_RS01970 0.41 -0.1
433,665 - DZA65_RS01970 0.41 -0.5
433,711 + DZA65_RS01970 0.46 -2.0
433,711 + DZA65_RS01970 0.46 +0.3
433,712 - DZA65_RS01970 0.46 -1.2
433,712 - DZA65_RS01970 0.46 +0.3
433,724 + DZA65_RS01970 0.47 +0.7
433,743 + DZA65_RS01970 0.49 -0.1
433,925 + DZA65_RS01970 0.68 +0.2
433,925 + DZA65_RS01970 0.68 +0.0
433,925 + DZA65_RS01970 0.68 +0.9
433,925 + DZA65_RS01970 0.68 -0.1
433,925 + DZA65_RS01970 0.68 -0.2
433,925 + DZA65_RS01970 0.68 +0.0
433,925 + DZA65_RS01970 0.68 +0.8
433,925 + DZA65_RS01970 0.68 +0.8
433,925 + DZA65_RS01970 0.68 -1.2
433,925 + DZA65_RS01970 0.68 -0.6
433,925 + DZA65_RS01970 0.68 -1.1
433,925 + DZA65_RS01970 0.68 +1.7
433,925 + DZA65_RS01970 0.68 -0.5
433,925 + DZA65_RS01970 0.68 +1.0
433,925 + DZA65_RS01970 0.68 -0.3
433,925 + DZA65_RS01970 0.68 -1.5
433,926 - DZA65_RS01970 0.68 -0.8
433,926 - DZA65_RS01970 0.68 +0.8
433,926 - DZA65_RS01970 0.68 +0.8
433,926 - DZA65_RS01970 0.68 -2.0
433,926 - DZA65_RS01970 0.68 +0.2
433,926 - DZA65_RS01970 0.68 -0.1
433,926 - DZA65_RS01970 0.68 +1.0
433,926 - DZA65_RS01970 0.68 -2.3
433,926 - DZA65_RS01970 0.68 +0.4
433,926 - +1.5
433,926 - DZA65_RS01970 0.68 -2.2
433,926 - DZA65_RS01970 0.68 -0.5
433,926 - DZA65_RS01970 0.68 +0.7
433,926 - DZA65_RS01970 0.68 -1.2
433,926 - DZA65_RS01970 0.68 -1.3
433,926 - DZA65_RS01970 0.68 +0.4
434,202 + -0.6
434,202 + +0.1
434,202 + +0.5
434,202 + +0.5
434,202 + -0.1
434,202 + +0.5
434,203 - -0.2
434,203 - +1.0
434,203 - -0.4
434,203 - -0.8
434,203 - +0.2
434,203 - +0.8
434,204 + -1.1
434,204 + +0.6
434,204 + +0.1
434,205 - -1.2
434,205 - -0.4
434,206 + +1.2
434,206 + +0.0
434,207 - +0.5
434,207 - -0.4
434,207 - +0.1
434,226 + -1.0
434,227 - -0.4
434,227 - -0.2
434,261 + -0.1
434,261 + -0.6
434,433 - +0.5
434,434 + -0.0
434,434 + +0.9
434,435 - -0.5
434,548 - -0.2
434,584 - +0.2
434,585 + -0.3
434,671 + +1.5
434,704 + DZA65_RS01975 0.15 -0.1
434,704 + DZA65_RS01975 0.15 +0.4
434,705 - DZA65_RS01975 0.16 +1.1
434,705 - DZA65_RS01975 0.16 +0.7
434,705 - DZA65_RS01975 0.16 +1.0
434,708 + DZA65_RS01975 0.16 -1.7
434,708 + DZA65_RS01975 0.16 -0.7
434,709 - DZA65_RS01975 0.16 +0.5
434,709 - DZA65_RS01975 0.16 +0.8
434,709 - DZA65_RS01975 0.16 -0.6
434,709 - DZA65_RS01975 0.16 -2.3
434,718 + DZA65_RS01975 0.18 +1.2
434,719 - DZA65_RS01975 0.19 -0.5
434,719 - DZA65_RS01975 0.19 -1.0
434,719 - DZA65_RS01975 0.19 +0.0
434,719 - DZA65_RS01975 0.19 +1.3
434,719 - DZA65_RS01975 0.19 +0.3
434,763 + DZA65_RS01975 0.28 -0.4
434,763 + DZA65_RS01975 0.28 -0.1
434,763 + DZA65_RS01975 0.28 -1.6
434,763 + DZA65_RS01975 0.28 -0.5
434,763 + DZA65_RS01975 0.28 +0.2
434,764 - DZA65_RS01975 0.28 -0.2
434,764 - DZA65_RS01975 0.28 +0.0
434,824 + DZA65_RS01975 0.41 -1.1
434,836 + DZA65_RS01975 0.44 +0.0
434,836 + DZA65_RS01975 0.44 +1.5
434,836 + DZA65_RS01975 0.44 +0.0
434,836 + DZA65_RS01975 0.44 +0.4
434,836 + DZA65_RS01975 0.44 -0.1
434,836 + DZA65_RS01975 0.44 +1.2
434,837 - DZA65_RS01975 0.44 -1.6
434,902 - DZA65_RS01975 0.58 -0.4
435,017 + DZA65_RS01975 0.82 +0.3
435,017 + DZA65_RS01975 0.82 -0.1
435,017 + DZA65_RS01975 0.82 -0.0
435,017 + DZA65_RS01975 0.82 -1.2
435,017 + DZA65_RS01975 0.82 +0.9
435,017 + DZA65_RS01975 0.82 +0.5
435,018 - DZA65_RS01975 0.82 +0.4
435,021 + +1.1
435,021 + DZA65_RS01975 0.83 -0.1
435,021 + DZA65_RS01975 0.83 -0.8
435,021 + DZA65_RS01975 0.83 +0.5
435,021 + DZA65_RS01975 0.83 -0.1
435,022 - DZA65_RS01975 0.83 +0.4
435,022 - DZA65_RS01975 0.83 +0.3
435,022 - DZA65_RS01975 0.83 +0.3
435,022 - DZA65_RS01975 0.83 -0.5
435,022 - DZA65_RS01975 0.83 +0.8
435,022 - DZA65_RS01975 0.83 -2.3
435,022 - DZA65_RS01975 0.83 +0.6
435,056 + +2.0
435,056 + -0.0
435,056 + -1.3
435,056 + +1.1
435,056 + +0.4
435,056 + +0.4
435,056 + -1.6
435,056 + -0.8
435,056 + -0.6
435,056 + -1.0
435,057 - +0.4
435,057 - -0.9
435,057 - -0.3
435,060 + +1.0
435,060 + -0.7
435,060 + +0.5
435,097 + +0.6
435,097 + +0.3
435,097 + -0.2
435,097 + -1.0
435,098 - -2.7
435,098 - -0.4
435,098 - -0.9
435,121 + +0.8
435,122 - +0.1
435,122 - +0.7
435,122 - +0.4
435,122 - +0.4
435,125 + -0.7
435,125 + -1.2
435,125 + +0.6
435,125 + -2.5
435,126 - +1.3
435,126 - +0.2
435,126 - +0.4
435,132 - -0.5
435,132 - -1.1
435,132 - +0.8
435,216 + -0.6
435,282 - -0.2
435,330 + -0.4
435,330 + +0.5
435,330 + -1.7
435,330 + +0.5
435,331 - +1.5
435,331 - -0.4
435,526 + DZA65_RS01980 0.14 -0.4
435,527 - DZA65_RS01980 0.14 +0.0
435,527 - DZA65_RS01980 0.14 -0.1
435,535 + DZA65_RS01980 0.14 -2.7
435,535 + DZA65_RS01980 0.14 +0.0
435,535 + DZA65_RS01980 0.14 -0.6
435,535 + DZA65_RS01980 0.14 +0.2
435,535 + DZA65_RS01980 0.14 -0.1
435,535 + DZA65_RS01980 0.14 +0.6
435,535 + DZA65_RS01980 0.14 -0.2
435,536 - DZA65_RS01980 0.14 -0.8
435,536 - DZA65_RS01980 0.14 +1.5
435,537 + DZA65_RS01980 0.14 +0.3
435,537 + DZA65_RS01980 0.14 -0.4
435,538 - DZA65_RS01980 0.14 -1.1
435,538 - DZA65_RS01980 0.14 -0.2
435,538 - DZA65_RS01980 0.14 +0.1
435,606 + DZA65_RS01980 0.19 -2.6
435,606 + +0.2
435,607 - DZA65_RS01980 0.19 +0.2
435,658 + DZA65_RS01980 0.23 -1.4
435,751 + DZA65_RS01980 0.29 -0.1
435,752 - DZA65_RS01980 0.29 +0.8
435,820 + DZA65_RS01980 0.34 -0.4
435,838 + DZA65_RS01980 0.35 -0.2
435,838 + DZA65_RS01980 0.35 +0.4
435,838 + DZA65_RS01980 0.35 -0.1
435,839 - DZA65_RS01980 0.35 -0.7
435,839 - DZA65_RS01980 0.35 -1.1
435,952 + DZA65_RS01980 0.43 -2.0
435,952 + DZA65_RS01980 0.43 +0.2
435,952 + DZA65_RS01980 0.43 -0.6
435,952 + DZA65_RS01980 0.43 -0.4
435,952 + DZA65_RS01980 0.43 -0.0
435,952 + DZA65_RS01980 0.43 +0.3
435,952 + DZA65_RS01980 0.43 +0.1
435,952 + DZA65_RS01980 0.43 +0.8
435,953 - DZA65_RS01980 0.43 -2.2
435,953 - DZA65_RS01980 0.43 -0.3
435,953 - DZA65_RS01980 0.43 +0.1
435,953 - DZA65_RS01980 0.43 -1.8
435,953 - DZA65_RS01980 0.43 +0.3
435,953 - DZA65_RS01980 0.43 +0.1
435,953 - DZA65_RS01980 0.43 -0.2
435,953 - DZA65_RS01980 0.43 +0.9
436,057 + DZA65_RS01980 0.51 +0.4
436,057 + DZA65_RS01980 0.51 -1.7
436,057 + DZA65_RS01980 0.51 -0.4
436,057 + DZA65_RS01980 0.51 -2.8
436,057 + DZA65_RS01980 0.51 +0.1
436,058 - DZA65_RS01980 0.51 -0.1
436,058 - DZA65_RS01980 0.51 +1.1
436,060 + DZA65_RS01980 0.51 -0.6
436,060 + DZA65_RS01980 0.51 +0.3
436,060 + DZA65_RS01980 0.51 +0.8
436,060 + DZA65_RS01980 0.51 +0.1
436,061 - DZA65_RS01980 0.51 +0.7
436,061 - DZA65_RS01980 0.51 -0.9
436,061 - DZA65_RS01980 0.51 +0.3
436,066 + DZA65_RS01980 0.51 -0.4
436,066 + DZA65_RS01980 0.51 +0.4
436,067 - +1.1

Or see this region's nucleotide sequence