Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01380 and DZA65_RS01385 are separated by 35 nucleotides DZA65_RS01385 and DZA65_RS01390 are separated by 238 nucleotides DZA65_RS01390 and DZA65_RS01395 are separated by 68 nucleotides
DZA65_RS01380: DZA65_RS01380 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 304,092 to 304,553
_RS01380
DZA65_RS01385: DZA65_RS01385 - type II 3-dehydroquinate dehydratase, at 304,589 to 305,041
_RS01385
DZA65_RS01390: DZA65_RS01390 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 305,280 to 305,879
_RS01390
DZA65_RS01395: DZA65_RS01395 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 305,948 to 306,949
_RS01395
Position (kb) 305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 304.595 kb on - strand at 305.084 kb on - strand at 305.125 kb on - strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.154 kb on + strand at 305.155 kb on - strand at 305.155 kb on - strand at 305.155 kb on - strand at 305.156 kb on + strand at 305.156 kb on + strand at 305.156 kb on + strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.157 kb on - strand at 305.185 kb on + strand at 305.194 kb on + strand at 305.194 kb on + strand at 305.206 kb on + strand at 305.272 kb on - strand at 305.275 kb on - strand at 305.387 kb on - strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.416 kb on + strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.417 kb on - strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.426 kb on + strand, within DZA65_RS01390 at 305.500 kb on - strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.530 kb on + strand, within DZA65_RS01390 at 305.531 kb on - strand, within DZA65_RS01390 at 305.596 kb on + strand, within DZA65_RS01390 at 305.596 kb on + strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.597 kb on - strand, within DZA65_RS01390 at 305.675 kb on + strand, within DZA65_RS01390 at 305.675 kb on + strand, within DZA65_RS01390 at 305.703 kb on + strand, within DZA65_RS01390 at 305.703 kb on + strand, within DZA65_RS01390 at 305.754 kb on - strand, within DZA65_RS01390 at 305.927 kb on - strand at 305.933 kb on + strand at 305.933 kb on + strand at 305.933 kb on + strand at 305.934 kb on - strand at 305.963 kb on + strand at 305.963 kb on + strand at 305.964 kb on - strand at 305.964 kb on - strand at 305.980 kb on - strand at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.146 kb on + strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.147 kb on - strand, within DZA65_RS01395 at 306.158 kb on - strand, within DZA65_RS01395 at 306.158 kb on - strand, within DZA65_RS01395 at 306.187 kb on + strand, within DZA65_RS01395 at 306.188 kb on - strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.202 kb on + strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.203 kb on - strand, within DZA65_RS01395 at 306.211 kb on + strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.212 kb on - strand, within DZA65_RS01395 at 306.219 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.279 kb on + strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.280 kb on - strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.281 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.329 kb on + strand, within DZA65_RS01395 at 306.330 kb on - strand, within DZA65_RS01395 at 306.330 kb on - strand, within DZA65_RS01395 at 306.342 kb on + strand, within DZA65_RS01395 at 306.343 kb on - strand, within DZA65_RS01395 at 306.348 kb on + strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.427 kb on - strand, within DZA65_RS01395 at 306.459 kb on - strand, within DZA65_RS01395 at 306.529 kb on - strand, within DZA65_RS01395 at 306.529 kb on - strand, within DZA65_RS01395 at 306.582 kb on - strand, within DZA65_RS01395 at 306.631 kb on + strand, within DZA65_RS01395 at 306.631 kb on + strand, within DZA65_RS01395 at 306.681 kb on + strand, within DZA65_RS01395 at 306.682 kb on - strand, within DZA65_RS01395 at 306.694 kb on - strand, within DZA65_RS01395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 304,595 - -1.0 305,084 - -0.3 305,125 - +0.4 305,154 + -1.0 305,154 + +0.4 305,154 + +1.2 305,154 + +0.3 305,155 - -0.2 305,155 - -0.2 305,155 - -0.3 305,156 + +0.7 305,156 + -1.3 305,156 + -0.1 305,157 - -1.3 305,157 - +0.3 305,157 - -0.3 305,157 - +0.1 305,185 + +0.7 305,194 + +1.7 305,194 + +0.4 305,206 + -0.5 305,272 - +1.1 305,275 - +0.2 305,387 - DZA65_RS01390 0.18 -0.2 305,416 + DZA65_RS01390 0.23 +1.0 305,416 + DZA65_RS01390 0.23 -1.0 305,416 + DZA65_RS01390 0.23 -0.2 305,417 - DZA65_RS01390 0.23 -0.1 305,417 - DZA65_RS01390 0.23 -0.0 305,417 - DZA65_RS01390 0.23 -0.0 305,417 - DZA65_RS01390 0.23 +0.8 305,417 - DZA65_RS01390 0.23 +0.1 305,426 + DZA65_RS01390 0.24 -0.3 305,426 + DZA65_RS01390 0.24 +0.2 305,426 + DZA65_RS01390 0.24 +0.6 305,500 - DZA65_RS01390 0.37 -0.3 305,530 + DZA65_RS01390 0.42 -0.3 305,530 + DZA65_RS01390 0.42 +0.4 305,530 + DZA65_RS01390 0.42 +0.5 305,531 - DZA65_RS01390 0.42 +0.3 305,596 + DZA65_RS01390 0.53 -0.3 305,596 + DZA65_RS01390 0.53 +0.1 305,597 - DZA65_RS01390 0.53 -1.5 305,597 - DZA65_RS01390 0.53 -0.1 305,597 - DZA65_RS01390 0.53 +0.5 305,597 - DZA65_RS01390 0.53 +0.1 305,675 + DZA65_RS01390 0.66 +1.0 305,675 + DZA65_RS01390 0.66 +0.4 305,703 + DZA65_RS01390 0.70 -0.2 305,703 + DZA65_RS01390 0.70 +1.3 305,754 - DZA65_RS01390 0.79 +0.5 305,927 - -0.7 305,933 + -0.0 305,933 + -0.7 305,933 + +1.7 305,934 - -0.2 305,963 + -0.2 305,963 + -0.0 305,964 - +0.8 305,964 - +1.1 305,980 - +0.5 306,146 + DZA65_RS01395 0.20 -0.9 306,146 + DZA65_RS01395 0.20 -1.5 306,146 + DZA65_RS01395 0.20 +1.0 306,146 + DZA65_RS01395 0.20 +0.6 306,146 + DZA65_RS01395 0.20 +0.2 306,146 + DZA65_RS01395 0.20 -0.2 306,146 + DZA65_RS01395 0.20 -1.0 306,146 + DZA65_RS01395 0.20 -0.6 306,146 + DZA65_RS01395 0.20 -1.6 306,146 + DZA65_RS01395 0.20 +0.3 306,146 + DZA65_RS01395 0.20 +0.2 306,147 - DZA65_RS01395 0.20 +0.3 306,147 - DZA65_RS01395 0.20 -1.0 306,147 - DZA65_RS01395 0.20 -1.5 306,147 - DZA65_RS01395 0.20 -0.8 306,147 - DZA65_RS01395 0.20 -0.8 306,147 - DZA65_RS01395 0.20 +0.2 306,158 - DZA65_RS01395 0.21 -1.9 306,158 - DZA65_RS01395 0.21 +0.5 306,187 + DZA65_RS01395 0.24 +0.1 306,188 - DZA65_RS01395 0.24 +1.1 306,202 + DZA65_RS01395 0.25 -0.5 306,202 + DZA65_RS01395 0.25 -1.3 306,202 + DZA65_RS01395 0.25 +0.9 306,202 + DZA65_RS01395 0.25 -0.9 306,202 + DZA65_RS01395 0.25 +0.3 306,202 + DZA65_RS01395 0.25 -1.5 306,202 + DZA65_RS01395 0.25 -0.2 306,203 - DZA65_RS01395 0.25 -0.7 306,203 - DZA65_RS01395 0.25 -0.9 306,203 - DZA65_RS01395 0.25 +0.1 306,203 - DZA65_RS01395 0.25 +1.1 306,211 + DZA65_RS01395 0.26 +0.5 306,212 - DZA65_RS01395 0.26 +0.5 306,212 - DZA65_RS01395 0.26 +0.5 306,212 - DZA65_RS01395 0.26 -0.0 306,219 + DZA65_RS01395 0.27 -0.9 306,279 + DZA65_RS01395 0.33 +0.5 306,279 + DZA65_RS01395 0.33 -0.3 306,279 + DZA65_RS01395 0.33 +0.4 306,279 + DZA65_RS01395 0.33 +1.1 306,279 + DZA65_RS01395 0.33 -1.3 306,280 - DZA65_RS01395 0.33 -0.0 306,280 - DZA65_RS01395 0.33 -0.2 306,280 - DZA65_RS01395 0.33 +0.3 306,281 + DZA65_RS01395 0.33 +0.5 306,281 + DZA65_RS01395 0.33 +0.5 306,281 + DZA65_RS01395 0.33 +0.1 306,329 + DZA65_RS01395 0.38 -0.2 306,329 + DZA65_RS01395 0.38 -0.1 306,329 + DZA65_RS01395 0.38 +0.8 306,329 + DZA65_RS01395 0.38 -1.3 306,329 + DZA65_RS01395 0.38 -1.4 306,329 + DZA65_RS01395 0.38 +0.3 306,330 - DZA65_RS01395 0.38 +0.5 306,330 - DZA65_RS01395 0.38 -0.6 306,342 + DZA65_RS01395 0.39 -1.8 306,343 - DZA65_RS01395 0.39 -0.2 306,348 + DZA65_RS01395 0.40 +0.4 306,427 - DZA65_RS01395 0.48 +0.4 306,427 - DZA65_RS01395 0.48 -0.0 306,427 - DZA65_RS01395 0.48 +1.2 306,427 - DZA65_RS01395 0.48 +0.2 306,427 - DZA65_RS01395 0.48 -0.6 306,459 - DZA65_RS01395 0.51 -1.6 306,529 - DZA65_RS01395 0.58 -0.7 306,529 - DZA65_RS01395 0.58 -0.1 306,582 - DZA65_RS01395 0.63 +0.8 306,631 + DZA65_RS01395 0.68 +1.1 306,631 + DZA65_RS01395 0.68 -0.8 306,681 + DZA65_RS01395 0.73 +0.4 306,682 - DZA65_RS01395 0.73 -0.2 306,694 - DZA65_RS01395 0.74 -0.2
Or see this region's nucleotide sequence