Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01275 and DZA65_RS01280 are separated by 102 nucleotides DZA65_RS01280 and DZA65_RS01285 are separated by 280 nucleotides DZA65_RS01285 and DZA65_RS01290 are separated by 8 nucleotides
DZA65_RS01275: DZA65_RS01275 - 23S ribosomal RNA, at 283,967 to 286,990
_RS01275
DZA65_RS01280: DZA65_RS01280 - 5S ribosomal RNA, at 287,093 to 287,208
_RS01280
DZA65_RS01285: DZA65_RS01285 - amino acid ABC transporter ATP-binding protein, at 287,489 to 288,250
_RS01285
DZA65_RS01290: DZA65_RS01290 - amino acid ABC transporter permease, at 288,259 to 289,347
_RS01290
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.323 kb on - strand at 287.458 kb on - strand at 287.458 kb on - strand at 287.458 kb on - strand at 287.491 kb on - strand at 287.499 kb on - strand at 287.499 kb on - strand at 287.521 kb on + strand at 287.521 kb on + strand at 287.521 kb on + strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.591 kb on - strand, within DZA65_RS01285 at 287.591 kb on - strand, within DZA65_RS01285 at 287.591 kb on - strand, within DZA65_RS01285 at 287.614 kb on + strand, within DZA65_RS01285 at 287.821 kb on + strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.857 kb on - strand, within DZA65_RS01285 at 287.857 kb on - strand, within DZA65_RS01285 at 287.920 kb on + strand, within DZA65_RS01285 at 287.920 kb on + strand, within DZA65_RS01285 at 287.921 kb on - strand, within DZA65_RS01285 at 287.921 kb on - strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.154 kb on + strand, within DZA65_RS01285 at 288.155 kb on - strand, within DZA65_RS01285 at 288.158 kb on - strand, within DZA65_RS01285 at 288.167 kb on + strand, within DZA65_RS01285 at 288.168 kb on - strand, within DZA65_RS01285 at 288.190 kb on + strand at 288.191 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.234 kb on - strand at 288.295 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.307 kb on - strand at 288.308 kb on + strand at 288.339 kb on - strand at 288.339 kb on - strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.380 kb on - strand, within DZA65_RS01290 at 288.380 kb on - strand, within DZA65_RS01290 at 288.540 kb on + strand, within DZA65_RS01290 at 288.541 kb on - strand, within DZA65_RS01290 at 288.541 kb on - strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.629 kb on + strand, within DZA65_RS01290 at 288.629 kb on + strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.687 kb on + strand, within DZA65_RS01290 at 288.688 kb on - strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.774 kb on + strand, within DZA65_RS01290 at 288.873 kb on + strand, within DZA65_RS01290 at 288.873 kb on + strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.877 kb on - strand, within DZA65_RS01290 at 288.877 kb on - strand at 288.911 kb on - strand, within DZA65_RS01290 at 288.911 kb on - strand, within DZA65_RS01290 at 288.911 kb on - strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.990 kb on - strand, within DZA65_RS01290 at 288.990 kb on - strand, within DZA65_RS01290 at 289.027 kb on + strand, within DZA65_RS01290 at 289.048 kb on + strand, within DZA65_RS01290 at 289.049 kb on - strand, within DZA65_RS01290 at 289.065 kb on + strand, within DZA65_RS01290 at 289.098 kb on - strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 287,323 - -0.3 287,458 - +0.2 287,458 - +1.5 287,458 - +0.2 287,491 - -0.1 287,499 - +0.7 287,499 - -0.6 287,521 + +0.7 287,521 + +0.9 287,521 + -0.0 287,522 - -0.8 287,522 - -0.2 287,522 - +0.0 287,591 - DZA65_RS01285 0.13 -1.0 287,591 - DZA65_RS01285 0.13 -1.6 287,591 - DZA65_RS01285 0.13 -1.9 287,614 + DZA65_RS01285 0.16 -1.6 287,821 + DZA65_RS01285 0.44 +1.5 287,822 - DZA65_RS01285 0.44 -1.5 287,822 - DZA65_RS01285 0.44 -1.8 287,822 - DZA65_RS01285 0.44 +0.2 287,822 - DZA65_RS01285 0.44 -0.2 287,856 + DZA65_RS01285 0.48 -1.8 287,856 + DZA65_RS01285 0.48 -1.7 287,856 + DZA65_RS01285 0.48 -2.0 287,857 - DZA65_RS01285 0.48 -0.1 287,857 - DZA65_RS01285 0.48 +1.7 287,920 + DZA65_RS01285 0.57 +0.3 287,920 + DZA65_RS01285 0.57 +0.7 287,921 - DZA65_RS01285 0.57 -0.6 287,921 - DZA65_RS01285 0.57 +0.2 288,043 + DZA65_RS01285 0.73 -0.8 288,043 + DZA65_RS01285 0.73 -1.2 288,043 + DZA65_RS01285 0.73 +0.3 288,043 + DZA65_RS01285 0.73 +0.2 288,043 + DZA65_RS01285 0.73 -0.6 288,043 + DZA65_RS01285 0.73 -0.7 288,043 + DZA65_RS01285 0.73 +0.6 288,043 + DZA65_RS01285 0.73 -0.3 288,043 + DZA65_RS01285 0.73 +1.2 288,044 - DZA65_RS01285 0.73 -0.7 288,044 - DZA65_RS01285 0.73 -1.0 288,044 - DZA65_RS01285 0.73 -0.6 288,044 - DZA65_RS01285 0.73 -0.5 288,044 - DZA65_RS01285 0.73 +0.2 288,044 - DZA65_RS01285 0.73 +0.7 288,044 - DZA65_RS01285 0.73 +0.4 288,044 - DZA65_RS01285 0.73 +0.1 288,044 - DZA65_RS01285 0.73 -0.3 288,044 - DZA65_RS01285 0.73 +0.1 288,044 - DZA65_RS01285 0.73 -0.3 288,044 - DZA65_RS01285 0.73 -0.8 288,044 - DZA65_RS01285 0.73 -1.2 288,076 + DZA65_RS01285 0.77 +0.5 288,076 + DZA65_RS01285 0.77 -0.5 288,076 + DZA65_RS01285 0.77 +0.1 288,077 - DZA65_RS01285 0.77 +0.0 288,077 - DZA65_RS01285 0.77 -0.4 288,077 - DZA65_RS01285 0.77 +0.9 288,127 + DZA65_RS01285 0.84 -0.2 288,127 + DZA65_RS01285 0.84 -0.7 288,127 + DZA65_RS01285 0.84 -0.3 288,127 + DZA65_RS01285 0.84 +1.3 288,127 + DZA65_RS01285 0.84 +0.5 288,127 + DZA65_RS01285 0.84 -0.9 288,127 + DZA65_RS01285 0.84 +0.1 288,127 + DZA65_RS01285 0.84 -0.6 288,127 + DZA65_RS01285 0.84 -1.6 288,127 + DZA65_RS01285 0.84 -0.3 288,128 - DZA65_RS01285 0.84 +0.8 288,128 - DZA65_RS01285 0.84 -0.6 288,128 - DZA65_RS01285 0.84 -0.4 288,128 - DZA65_RS01285 0.84 -0.0 288,128 - DZA65_RS01285 0.84 -0.6 288,128 - DZA65_RS01285 0.84 -0.8 288,128 - DZA65_RS01285 0.84 +1.8 288,128 - DZA65_RS01285 0.84 -0.4 288,128 - DZA65_RS01285 0.84 +0.5 288,128 - DZA65_RS01285 0.84 +0.0 288,128 - DZA65_RS01285 0.84 -1.1 288,154 + DZA65_RS01285 0.87 -0.6 288,155 - DZA65_RS01285 0.87 -1.3 288,158 - DZA65_RS01285 0.88 +0.1 288,167 + DZA65_RS01285 0.89 +0.1 288,168 - DZA65_RS01285 0.89 -0.3 288,190 + +0.4 288,191 - +0.1 288,217 - -0.3 288,217 - -0.9 288,217 - -0.1 288,217 - -1.6 288,234 - -2.0 288,295 + -1.0 288,306 + +0.9 288,306 + +0.3 288,306 + -0.5 288,306 + -1.3 288,307 - -0.3 288,308 + -1.0 288,339 - -2.3 288,339 - +1.5 288,355 + -0.1 288,355 + -0.0 288,355 + +0.7 288,355 + -1.5 288,355 + -0.8 288,355 + +0.6 288,355 + -1.0 288,355 + -0.6 288,355 + -0.6 288,355 + -0.3 288,355 + -0.2 288,356 - -0.5 288,356 - -0.2 288,356 - -0.9 288,356 - -0.4 288,356 - +0.3 288,356 - -0.6 288,356 - -2.4 288,356 - -0.8 288,356 - -1.6 288,356 - -1.1 288,356 - -0.9 288,359 + -1.0 288,359 + +0.2 288,360 - -0.3 288,360 - -0.4 288,360 - +0.3 288,360 - -0.4 288,360 - -0.3 288,360 - -0.3 288,380 - DZA65_RS01290 0.11 +0.2 288,380 - DZA65_RS01290 0.11 +0.2 288,540 + DZA65_RS01290 0.26 +0.9 288,541 - DZA65_RS01290 0.26 +0.4 288,541 - DZA65_RS01290 0.26 +1.5 288,578 + DZA65_RS01290 0.29 +0.2 288,578 + DZA65_RS01290 0.29 -0.6 288,578 + DZA65_RS01290 0.29 -1.4 288,578 + DZA65_RS01290 0.29 -0.6 288,579 - DZA65_RS01290 0.29 -0.1 288,579 - DZA65_RS01290 0.29 -0.7 288,579 - DZA65_RS01290 0.29 +1.2 288,579 - DZA65_RS01290 0.29 +0.5 288,579 - DZA65_RS01290 0.29 -0.8 288,579 - DZA65_RS01290 0.29 -0.7 288,579 - DZA65_RS01290 0.29 -2.7 288,579 - DZA65_RS01290 0.29 -0.4 288,629 + DZA65_RS01290 0.34 -0.2 288,629 + DZA65_RS01290 0.34 +0.4 288,630 - DZA65_RS01290 0.34 -0.2 288,630 - DZA65_RS01290 0.34 +0.5 288,630 - DZA65_RS01290 0.34 -0.4 288,687 + DZA65_RS01290 0.39 -0.6 288,688 - DZA65_RS01290 0.39 -0.9 288,733 + DZA65_RS01290 0.44 -0.3 288,733 + DZA65_RS01290 0.44 +0.5 288,733 + DZA65_RS01290 0.44 +1.1 288,774 + DZA65_RS01290 0.47 -0.6 288,873 + DZA65_RS01290 0.56 +0.5 288,873 + DZA65_RS01290 0.56 -0.8 288,874 - DZA65_RS01290 0.56 -0.5 288,874 - DZA65_RS01290 0.56 -0.0 288,874 - DZA65_RS01290 0.56 +0.5 288,874 - DZA65_RS01290 0.56 -0.5 288,876 + DZA65_RS01290 0.57 -0.2 288,876 + DZA65_RS01290 0.57 -1.5 288,876 + DZA65_RS01290 0.57 +1.9 288,876 + DZA65_RS01290 0.57 +0.1 288,876 + DZA65_RS01290 0.57 +0.1 288,876 + DZA65_RS01290 0.57 -0.8 288,877 - DZA65_RS01290 0.57 -0.7 288,877 - +1.5 288,911 - DZA65_RS01290 0.60 -0.2 288,911 - DZA65_RS01290 0.60 +0.8 288,911 - DZA65_RS01290 0.60 +1.5 288,970 + DZA65_RS01290 0.65 -0.0 288,970 + DZA65_RS01290 0.65 -0.3 288,970 + DZA65_RS01290 0.65 -0.6 288,971 - DZA65_RS01290 0.65 -1.3 288,971 - DZA65_RS01290 0.65 -0.0 288,971 - DZA65_RS01290 0.65 -1.3 288,971 - DZA65_RS01290 0.65 -0.9 288,989 + DZA65_RS01290 0.67 +1.1 288,989 + DZA65_RS01290 0.67 +0.2 288,989 + DZA65_RS01290 0.67 +0.8 288,990 - DZA65_RS01290 0.67 +0.3 288,990 - DZA65_RS01290 0.67 -0.9 289,027 + DZA65_RS01290 0.71 -0.5 289,048 + DZA65_RS01290 0.72 -0.4 289,049 - DZA65_RS01290 0.73 -2.2 289,065 + DZA65_RS01290 0.74 -1.3 289,098 - DZA65_RS01290 0.77 -0.6 289,101 + DZA65_RS01290 0.77 +0.1 289,101 + DZA65_RS01290 0.77 -2.2 289,101 + DZA65_RS01290 0.77 +1.4 289,101 + DZA65_RS01290 0.77 -0.1 289,101 + DZA65_RS01290 0.77 -0.1 289,101 + DZA65_RS01290 0.77 +1.0 289,101 + DZA65_RS01290 0.77 -0.2 289,102 - DZA65_RS01290 0.77 -0.3 289,102 - DZA65_RS01290 0.77 +0.9 289,102 - DZA65_RS01290 0.77 -0.5 289,102 - DZA65_RS01290 0.77 -0.5
Or see this region's nucleotide sequence