Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00750 and DZA65_RS00755 are separated by 293 nucleotides DZA65_RS00755 and DZA65_RS00760 are separated by 238 nucleotides DZA65_RS00760 and DZA65_RS00765 are separated by 11 nucleotides DZA65_RS00765 and DZA65_RS00770 are separated by 75 nucleotides
DZA65_RS00750: DZA65_RS00750 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 170,423 to 171,622
_RS00750
DZA65_RS00755: DZA65_RS00755 - JAB domain-containing protein, at 171,916 to 172,581
_RS00755
DZA65_RS00760: DZA65_RS00760 - 50S ribosomal protein L28, at 172,820 to 173,056
_RS00760
DZA65_RS00765: DZA65_RS00765 - 50S ribosomal protein L33, at 173,068 to 173,235
_RS00765
DZA65_RS00770: DZA65_RS00770 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 173,311 to 174,120
_RS00770
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 171.729 kb on - strand at 171.729 kb on - strand at 171.763 kb on + strand at 171.764 kb on - strand at 171.764 kb on - strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.768 kb on + strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.769 kb on - strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.778 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.793 kb on + strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.794 kb on - strand at 171.797 kb on + strand at 171.886 kb on - strand at 171.886 kb on - strand at 171.886 kb on - strand at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.078 kb on + strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.079 kb on - strand, within DZA65_RS00755 at 172.141 kb on + strand, within DZA65_RS00755 at 172.141 kb on + strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.142 kb on - strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.240 kb on + strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.241 kb on - strand, within DZA65_RS00755 at 172.351 kb on - strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.550 kb on - strand at 172.550 kb on - strand at 172.587 kb on - strand at 172.587 kb on - strand at 173.277 kb on + strand at 173.373 kb on + strand at 173.373 kb on + strand at 173.374 kb on - strand at 173.383 kb on + strand at 173.383 kb on + strand at 173.384 kb on - strand at 173.384 kb on - strand at 173.386 kb on - strand at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.513 kb on + strand, within DZA65_RS00770 at 173.527 kb on + strand, within DZA65_RS00770 at 173.560 kb on + strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 171,729 - -1.9 171,729 - +0.1 171,763 + +0.6 171,764 - +0.7 171,764 - +0.7 171,768 + +0.9 171,768 + -1.4 171,768 + -0.1 171,768 + -0.2 171,768 + +1.3 171,768 + +0.4 171,768 + +1.0 171,769 - +1.3 171,769 - +0.3 171,769 - +0.3 171,769 - -1.9 171,769 - -0.7 171,769 - -0.7 171,769 - -0.7 171,769 - -2.0 171,778 + -0.5 171,778 + +0.2 171,778 + -0.3 171,778 + -0.3 171,778 + -0.3 171,778 + +0.4 171,793 + -0.2 171,793 + -0.5 171,793 + -0.2 171,793 + +0.1 171,793 + -2.1 171,793 + +0.1 171,793 + -0.9 171,794 - +0.6 171,794 - -0.3 171,794 - +1.3 171,794 - -0.6 171,794 - -0.1 171,794 - +0.4 171,794 - -1.9 171,794 - +0.7 171,794 - -0.5 171,794 - -0.9 171,794 - -0.1 171,794 - +0.5 171,794 - -0.2 171,797 + -0.1 171,886 - -2.0 171,886 - -0.1 171,886 - -0.8 172,078 + DZA65_RS00755 0.24 +4.6 172,078 + DZA65_RS00755 0.24 -0.9 172,078 + DZA65_RS00755 0.24 -0.6 172,078 + DZA65_RS00755 0.24 +1.3 172,078 + DZA65_RS00755 0.24 +0.1 172,078 + DZA65_RS00755 0.24 +1.6 172,078 + DZA65_RS00755 0.24 +0.3 172,078 + DZA65_RS00755 0.24 +0.6 172,079 - DZA65_RS00755 0.24 -0.7 172,079 - DZA65_RS00755 0.24 +0.4 172,079 - DZA65_RS00755 0.24 -0.9 172,079 - DZA65_RS00755 0.24 -0.6 172,079 - DZA65_RS00755 0.24 -0.7 172,079 - DZA65_RS00755 0.24 +0.2 172,141 + DZA65_RS00755 0.34 -2.0 172,141 + DZA65_RS00755 0.34 -1.2 172,142 - DZA65_RS00755 0.34 -0.7 172,142 - DZA65_RS00755 0.34 -0.7 172,142 - DZA65_RS00755 0.34 +0.1 172,240 + DZA65_RS00755 0.49 +0.3 172,240 + DZA65_RS00755 0.49 -0.6 172,240 + DZA65_RS00755 0.49 +0.1 172,241 - DZA65_RS00755 0.49 +0.3 172,241 - DZA65_RS00755 0.49 +0.5 172,241 - DZA65_RS00755 0.49 -0.5 172,241 - DZA65_RS00755 0.49 -0.1 172,241 - DZA65_RS00755 0.49 +1.6 172,351 - DZA65_RS00755 0.65 -1.3 172,361 + DZA65_RS00755 0.67 -0.7 172,361 + DZA65_RS00755 0.67 +0.0 172,361 + DZA65_RS00755 0.67 -1.6 172,361 + DZA65_RS00755 0.67 -0.8 172,361 + DZA65_RS00755 0.67 -0.4 172,361 + DZA65_RS00755 0.67 +0.7 172,362 - DZA65_RS00755 0.67 -0.3 172,362 - DZA65_RS00755 0.67 -0.7 172,362 - DZA65_RS00755 0.67 -0.4 172,362 - DZA65_RS00755 0.67 -0.1 172,425 + DZA65_RS00755 0.76 +0.1 172,425 + DZA65_RS00755 0.76 -0.9 172,426 - DZA65_RS00755 0.77 -2.4 172,426 - DZA65_RS00755 0.77 -1.0 172,426 - DZA65_RS00755 0.77 -0.7 172,550 - -0.4 172,550 - -1.7 172,587 - +0.6 172,587 - +0.2 173,277 + +0.7 173,373 + +0.2 173,373 + -0.5 173,374 - +0.2 173,383 + -1.4 173,383 + -0.1 173,384 - -0.5 173,384 - -0.6 173,386 - +0.6 173,482 + DZA65_RS00770 0.21 -1.2 173,482 + DZA65_RS00770 0.21 -0.9 173,482 + DZA65_RS00770 0.21 -0.7 173,482 + DZA65_RS00770 0.21 -1.4 173,482 + DZA65_RS00770 0.21 -0.4 173,513 + DZA65_RS00770 0.25 +0.1 173,527 + DZA65_RS00770 0.27 -1.1 173,560 + DZA65_RS00770 0.31 +0.3 173,561 - DZA65_RS00770 0.31 -0.3 173,561 - DZA65_RS00770 0.31 +0.0
Or see this region's nucleotide sequence