Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00590 and DZA65_RS00595 overlap by 1 nucleotides DZA65_RS00595 and DZA65_RS00600 overlap by 4 nucleotides DZA65_RS00600 and DZA65_RS00605 are separated by 0 nucleotides
DZA65_RS00590: DZA65_RS00590 - ABC transporter substrate-binding protein, at 136,707 to 138,302
_RS00590
DZA65_RS00595: DZA65_RS00595 - ABC transporter permease, at 138,302 to 139,312
_RS00595
DZA65_RS00600: DZA65_RS00600 - ABC transporter permease, at 139,309 to 140,211
_RS00600
DZA65_RS00605: DZA65_RS00605 - ABC transporter ATP-binding protein, at 140,212 to 141,039
_RS00605
Position (kb) 138
139
140 Strain fitness (log2 ratio) -2
-1
0
1
2 at 137.344 kb on + strand, within DZA65_RS00590 at 137.344 kb on + strand, within DZA65_RS00590 at 137.411 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.985 kb on + strand, within DZA65_RS00590 at 137.986 kb on - strand, within DZA65_RS00590 at 138.153 kb on + strand at 138.153 kb on + strand at 138.154 kb on - strand at 138.154 kb on - strand at 138.262 kb on + strand at 138.262 kb on + strand at 138.279 kb on + strand at 138.279 kb on + strand at 138.309 kb on + strand at 138.310 kb on - strand at 138.328 kb on + strand at 138.329 kb on - strand at 138.501 kb on - strand, within DZA65_RS00595 at 138.501 kb on - strand, within DZA65_RS00595 at 138.509 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.710 kb on - strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.885 kb on - strand, within DZA65_RS00595 at 138.936 kb on + strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.976 kb on + strand, within DZA65_RS00595 at 139.112 kb on + strand, within DZA65_RS00595 at 139.113 kb on - strand, within DZA65_RS00595 at 139.178 kb on + strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.187 kb on - strand, within DZA65_RS00595 at 139.228 kb on + strand at 139.228 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.283 kb on + strand at 139.283 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.493 kb on - strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.611 kb on + strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.887 kb on + strand, within DZA65_RS00600 at 140.209 kb on + strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 137,344 + DZA65_RS00590 0.40 -1.3 137,344 + DZA65_RS00590 0.40 -0.5 137,411 + DZA65_RS00590 0.44 +1.2 137,479 + DZA65_RS00590 0.48 -0.1 137,479 + DZA65_RS00590 0.48 +0.4 137,479 + DZA65_RS00590 0.48 +0.3 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -0.5 137,479 + DZA65_RS00590 0.48 -1.4 137,479 + +2.6 137,479 + DZA65_RS00590 0.48 -0.4 137,479 + DZA65_RS00590 0.48 +0.6 137,479 + DZA65_RS00590 0.48 -0.0 137,479 + DZA65_RS00590 0.48 +0.1 137,479 + DZA65_RS00590 0.48 -0.3 137,479 + DZA65_RS00590 0.48 +1.6 137,479 + DZA65_RS00590 0.48 +0.0 137,479 + DZA65_RS00590 0.48 +0.9 137,479 + DZA65_RS00590 0.48 +0.4 137,479 + DZA65_RS00590 0.48 -1.0 137,479 + DZA65_RS00590 0.48 +0.4 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -0.2 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -1.3 137,479 + DZA65_RS00590 0.48 -0.4 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 -1.4 137,480 - DZA65_RS00590 0.48 -1.2 137,480 - DZA65_RS00590 0.48 -0.4 137,480 - DZA65_RS00590 0.48 +0.8 137,480 - DZA65_RS00590 0.48 -2.0 137,480 - DZA65_RS00590 0.48 +0.1 137,480 - DZA65_RS00590 0.48 +1.5 137,480 - DZA65_RS00590 0.48 +0.5 137,480 - DZA65_RS00590 0.48 -0.7 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 -0.3 137,480 - DZA65_RS00590 0.48 +0.3 137,480 - DZA65_RS00590 0.48 +0.0 137,480 - DZA65_RS00590 0.48 +0.0 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 +1.0 137,480 - DZA65_RS00590 0.48 -1.9 137,480 - DZA65_RS00590 0.48 -0.9 137,538 + DZA65_RS00590 0.52 -1.4 137,538 + DZA65_RS00590 0.52 +0.0 137,538 + DZA65_RS00590 0.52 -0.7 137,538 + DZA65_RS00590 0.52 -0.8 137,539 - DZA65_RS00590 0.52 +1.0 137,539 - DZA65_RS00590 0.52 -0.2 137,630 + DZA65_RS00590 0.58 +0.6 137,630 + DZA65_RS00590 0.58 -0.6 137,630 + DZA65_RS00590 0.58 -0.2 137,826 + DZA65_RS00590 0.70 +0.1 137,826 + DZA65_RS00590 0.70 -1.2 137,826 + DZA65_RS00590 0.70 +0.0 137,827 - DZA65_RS00590 0.70 +0.5 137,827 - DZA65_RS00590 0.70 -1.9 137,985 + DZA65_RS00590 0.80 -1.0 137,986 - DZA65_RS00590 0.80 -1.7 138,153 + -0.2 138,153 + +0.6 138,154 - -0.6 138,154 - -0.3 138,262 + -0.9 138,262 + +0.6 138,279 + -0.5 138,279 + -2.1 138,309 + +0.4 138,310 - +0.5 138,328 + +0.0 138,329 - -0.8 138,501 - DZA65_RS00595 0.20 -0.6 138,501 - DZA65_RS00595 0.20 +0.3 138,509 + DZA65_RS00595 0.20 +1.1 138,587 + DZA65_RS00595 0.28 +0.6 138,587 + DZA65_RS00595 0.28 -1.2 138,587 + DZA65_RS00595 0.28 -1.0 138,588 - DZA65_RS00595 0.28 -0.6 138,588 - DZA65_RS00595 0.28 -0.2 138,709 + DZA65_RS00595 0.40 -1.3 138,709 + DZA65_RS00595 0.40 -0.4 138,709 + DZA65_RS00595 0.40 -0.9 138,710 - DZA65_RS00595 0.40 -0.7 138,884 + DZA65_RS00595 0.58 -0.4 138,884 + DZA65_RS00595 0.58 -0.7 138,885 - DZA65_RS00595 0.58 -0.2 138,936 + DZA65_RS00595 0.63 -1.7 138,937 - DZA65_RS00595 0.63 -0.1 138,937 - DZA65_RS00595 0.63 -1.9 138,941 + DZA65_RS00595 0.63 +0.9 138,941 + DZA65_RS00595 0.63 -0.1 138,941 + DZA65_RS00595 0.63 +1.0 138,941 + DZA65_RS00595 0.63 -0.4 138,941 + DZA65_RS00595 0.63 -0.4 138,942 - DZA65_RS00595 0.63 -0.8 138,942 - DZA65_RS00595 0.63 +0.8 138,942 - DZA65_RS00595 0.63 +1.6 138,956 + DZA65_RS00595 0.65 -0.2 138,956 + DZA65_RS00595 0.65 +0.0 138,956 + DZA65_RS00595 0.65 -0.7 138,956 + DZA65_RS00595 0.65 +0.2 138,956 + DZA65_RS00595 0.65 -0.6 138,956 + DZA65_RS00595 0.65 -0.4 138,956 + DZA65_RS00595 0.65 +1.6 138,956 + DZA65_RS00595 0.65 -0.4 138,956 + DZA65_RS00595 0.65 -0.6 138,956 + DZA65_RS00595 0.65 -0.3 138,957 - DZA65_RS00595 0.65 -0.7 138,957 - DZA65_RS00595 0.65 +0.5 138,957 - DZA65_RS00595 0.65 -0.7 138,957 - DZA65_RS00595 0.65 -0.0 138,957 - DZA65_RS00595 0.65 +0.1 138,957 - DZA65_RS00595 0.65 -2.1 138,957 - DZA65_RS00595 0.65 -0.4 138,957 - DZA65_RS00595 0.65 +0.1 138,976 + DZA65_RS00595 0.67 +0.0 139,112 + DZA65_RS00595 0.80 -1.0 139,113 - DZA65_RS00595 0.80 -0.8 139,178 + DZA65_RS00595 0.87 +1.1 139,179 - DZA65_RS00595 0.87 -0.8 139,179 - DZA65_RS00595 0.87 -0.4 139,179 - DZA65_RS00595 0.87 -0.4 139,187 - DZA65_RS00595 0.88 -0.5 139,228 + +0.5 139,228 + -0.8 139,250 + +0.0 139,250 + +0.2 139,250 + -1.4 139,250 + +0.0 139,250 + +1.6 139,250 + -0.5 139,250 + +0.6 139,251 - -1.0 139,251 - +0.2 139,251 - +1.3 139,251 - -0.1 139,251 - -1.0 139,251 - -0.7 139,251 - +0.0 139,251 - +1.3 139,251 - +0.0 139,283 + -0.8 139,283 + -0.7 139,318 + +1.0 139,318 + -2.0 139,318 + -1.2 139,318 + -0.1 139,318 + +0.3 139,318 + -0.5 139,318 + -0.1 139,318 + +0.0 139,318 + -0.3 139,319 - +0.3 139,319 - +0.4 139,319 - -1.1 139,319 - -0.6 139,319 - -1.6 139,319 - -0.3 139,319 - -0.3 139,319 - -0.7 139,319 - -0.1 139,319 - -0.7 139,493 - DZA65_RS00600 0.20 +0.0 139,608 + DZA65_RS00600 0.33 -0.8 139,608 + DZA65_RS00600 0.33 +0.9 139,608 + DZA65_RS00600 0.33 -1.0 139,608 + DZA65_RS00600 0.33 +1.9 139,609 - DZA65_RS00600 0.33 +1.0 139,609 - DZA65_RS00600 0.33 +0.4 139,609 - DZA65_RS00600 0.33 -1.2 139,611 + DZA65_RS00600 0.33 -1.3 139,612 - DZA65_RS00600 0.34 -1.9 139,612 - DZA65_RS00600 0.34 -1.6 139,612 - DZA65_RS00600 0.34 -0.7 139,612 - DZA65_RS00600 0.34 -1.0 139,612 - DZA65_RS00600 0.34 +0.1 139,612 - DZA65_RS00600 0.34 -0.2 139,612 - DZA65_RS00600 0.34 -0.7 139,612 - DZA65_RS00600 0.34 +1.2 139,612 - DZA65_RS00600 0.34 -0.1 139,612 - DZA65_RS00600 0.34 +0.2 139,705 - DZA65_RS00600 0.44 +2.3 139,705 - DZA65_RS00600 0.44 -2.1 139,887 + DZA65_RS00600 0.64 +0.0 140,209 + -0.5 140,209 + -1.5 140,210 - -1.3 140,210 - +0.3
Or see this region's nucleotide sequence