Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00175

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00165 and DZA65_RS00170 overlap by 4 nucleotidesDZA65_RS00170 and DZA65_RS00175 are separated by 1 nucleotidesDZA65_RS00175 and DZA65_RS00180 are separated by 28 nucleotides DZA65_RS00165: DZA65_RS00165 - ABC transporter ATP-binding protein, at 36,905 to 38,557 _RS00165 DZA65_RS00170: DZA65_RS00170 - ABC transporter permease, at 38,554 to 39,444 _RS00170 DZA65_RS00175: DZA65_RS00175 - ABC transporter permease, at 39,446 to 40,387 _RS00175 DZA65_RS00180: DZA65_RS00180 - TIGR04028 family ABC transporter substrate-binding protein, at 40,416 to 42,059 _RS00180 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.484 kb on + strandat 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.660 kb on + strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.661 kb on - strand, within DZA65_RS00170at 38.830 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 38.868 kb on - strand, within DZA65_RS00170at 39.040 kb on + strand, within DZA65_RS00170at 39.040 kb on + strandat 39.041 kb on - strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.170 kb on + strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.171 kb on - strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.206 kb on + strand, within DZA65_RS00170at 39.207 kb on - strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.221 kb on + strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.222 kb on - strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.236 kb on + strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.237 kb on - strand, within DZA65_RS00170at 39.298 kb on - strand, within DZA65_RS00170at 39.444 kb on + strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.445 kb on - strandat 39.489 kb on + strandat 39.557 kb on + strand, within DZA65_RS00175at 39.557 kb on + strand, within DZA65_RS00175at 39.558 kb on - strand, within DZA65_RS00175at 39.722 kb on + strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 39.723 kb on - strand, within DZA65_RS00175at 40.091 kb on + strand, within DZA65_RS00175at 40.232 kb on + strand, within DZA65_RS00175at 40.324 kb on + strandat 40.324 kb on + strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.325 kb on - strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.374 kb on + strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.375 kb on - strandat 40.380 kb on - strandat 40.417 kb on + strandat 40.417 kb on + strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.418 kb on - strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.438 kb on + strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.439 kb on - strandat 40.456 kb on - strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.531 kb on + strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.532 kb on - strandat 40.549 kb on + strandat 40.549 kb on + strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.550 kb on - strandat 40.705 kb on + strand, within DZA65_RS00180at 40.719 kb on + strand, within DZA65_RS00180at 40.719 kb on + strand, within DZA65_RS00180at 40.720 kb on - strand, within DZA65_RS00180at 40.740 kb on + strand, within DZA65_RS00180at 41.030 kb on - strand, within DZA65_RS00180at 41.083 kb on + strand, within DZA65_RS00180at 41.083 kb on + strand, within DZA65_RS00180at 41.119 kb on + strand, within DZA65_RS00180at 41.212 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.251 kb on + strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.252 kb on - strand, within DZA65_RS00180at 41.307 kb on + strand, within DZA65_RS00180at 41.307 kb on + strand, within DZA65_RS00180at 41.308 kb on - strand, within DZA65_RS00180at 41.308 kb on - strandat 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.332 kb on + strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.333 kb on - strand, within DZA65_RS00180at 41.350 kb on + strandat 41.350 kb on + strand, within DZA65_RS00180at 41.350 kb on + strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180at 41.351 kb on - strand, within DZA65_RS00180

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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38,484 + +0.5
38,660 + DZA65_RS00170 0.12 +0.8
38,660 + DZA65_RS00170 0.12 -0.6
38,660 + DZA65_RS00170 0.12 +0.9
38,660 + DZA65_RS00170 0.12 -0.6
38,660 + DZA65_RS00170 0.12 +0.1
38,660 + DZA65_RS00170 0.12 -0.7
38,661 - DZA65_RS00170 0.12 +0.3
38,661 - DZA65_RS00170 0.12 -0.3
38,661 - DZA65_RS00170 0.12 +0.9
38,830 - DZA65_RS00170 0.31 -0.7
38,868 - DZA65_RS00170 0.35 -0.8
38,868 - DZA65_RS00170 0.35 +1.6
39,040 + DZA65_RS00170 0.55 -1.2
39,040 + +0.6
39,041 - DZA65_RS00170 0.55 -0.6
39,170 + DZA65_RS00170 0.69 -0.2
39,170 + DZA65_RS00170 0.69 -1.6
39,170 + DZA65_RS00170 0.69 -1.7
39,170 + DZA65_RS00170 0.69 +0.4
39,171 - DZA65_RS00170 0.69 -0.5
39,171 - DZA65_RS00170 0.69 +0.3
39,171 - DZA65_RS00170 0.69 +0.5
39,171 - DZA65_RS00170 0.69 -2.2
39,206 + DZA65_RS00170 0.73 +0.6
39,206 + DZA65_RS00170 0.73 +1.6
39,207 - DZA65_RS00170 0.73 +1.1
39,221 + DZA65_RS00170 0.75 +0.3
39,221 + DZA65_RS00170 0.75 +1.4
39,221 + DZA65_RS00170 0.75 -1.5
39,221 + DZA65_RS00170 0.75 +0.2
39,221 + DZA65_RS00170 0.75 -1.2
39,221 + DZA65_RS00170 0.75 +0.6
39,221 + DZA65_RS00170 0.75 -0.3
39,221 + DZA65_RS00170 0.75 +0.1
39,222 - DZA65_RS00170 0.75 +0.3
39,222 - DZA65_RS00170 0.75 -1.1
39,222 - DZA65_RS00170 0.75 +0.8
39,222 - DZA65_RS00170 0.75 -0.5
39,222 - DZA65_RS00170 0.75 +0.9
39,222 - DZA65_RS00170 0.75 -0.9
39,236 + DZA65_RS00170 0.77 -0.3
39,236 + DZA65_RS00170 0.77 +0.3
39,236 + DZA65_RS00170 0.77 -0.2
39,236 + DZA65_RS00170 0.77 +0.4
39,236 + DZA65_RS00170 0.77 +0.0
39,236 + DZA65_RS00170 0.77 -0.2
39,237 - DZA65_RS00170 0.77 -1.0
39,237 - DZA65_RS00170 0.77 +1.3
39,237 - DZA65_RS00170 0.77 +0.0
39,298 - DZA65_RS00170 0.84 -0.4
39,444 + -0.7
39,445 - +0.4
39,445 - -1.0
39,445 - -0.9
39,489 + -0.1
39,557 + DZA65_RS00175 0.12 -2.3
39,557 + DZA65_RS00175 0.12 -1.1
39,558 - DZA65_RS00175 0.12 -0.5
39,722 + DZA65_RS00175 0.29 -0.4
39,723 - DZA65_RS00175 0.29 -0.4
39,723 - DZA65_RS00175 0.29 -1.2
39,723 - DZA65_RS00175 0.29 -0.4
40,091 + DZA65_RS00175 0.68 -1.4
40,232 + DZA65_RS00175 0.83 -0.8
40,324 + -1.6
40,324 + +0.7
40,325 - +0.0
40,325 - +0.6
40,325 - +0.4
40,325 - -0.9
40,325 - -0.4
40,325 - -1.3
40,374 + -0.1
40,374 + -2.5
40,374 + +0.6
40,374 + +0.3
40,374 + +0.5
40,374 + +0.4
40,375 - -0.4
40,375 - +0.5
40,375 - +0.3
40,375 - +0.0
40,380 - -0.6
40,417 + -0.4
40,417 + -0.4
40,418 - +0.2
40,418 - -0.1
40,418 - -0.2
40,418 - -1.2
40,418 - -0.8
40,438 + +0.1
40,438 + -0.7
40,438 + +0.6
40,438 + +0.2
40,438 + +0.0
40,439 - -0.1
40,439 - +0.6
40,439 - +0.9
40,439 - -1.1
40,456 - +0.1
40,531 + +1.1
40,531 + +1.0
40,531 + +0.0
40,531 + -0.7
40,531 + +0.8
40,531 + -1.1
40,531 + +0.1
40,531 + -0.4
40,531 + +0.3
40,531 + +0.9
40,532 - -0.7
40,532 - -1.4
40,532 - +0.6
40,532 - -0.7
40,532 - -0.2
40,532 - +0.0
40,532 - -1.2
40,532 - -0.2
40,532 - -0.8
40,532 - -0.8
40,549 + +0.0
40,549 + -0.2
40,550 - -0.4
40,550 - -0.4
40,550 - +0.4
40,550 - +0.6
40,550 - -0.6
40,550 - +0.6
40,705 + DZA65_RS00180 0.18 +0.2
40,719 + DZA65_RS00180 0.18 -0.2
40,719 + DZA65_RS00180 0.18 +0.3
40,720 - DZA65_RS00180 0.18 -0.4
40,740 + DZA65_RS00180 0.20 -1.6
41,030 - DZA65_RS00180 0.37 -0.2
41,083 + DZA65_RS00180 0.41 -0.4
41,083 + DZA65_RS00180 0.41 -0.1
41,119 + DZA65_RS00180 0.43 +0.3
41,212 + DZA65_RS00180 0.48 +0.6
41,251 + DZA65_RS00180 0.51 -0.2
41,251 + DZA65_RS00180 0.51 -0.1
41,251 + DZA65_RS00180 0.51 +0.5
41,251 + DZA65_RS00180 0.51 -0.1
41,251 + DZA65_RS00180 0.51 +1.1
41,251 + DZA65_RS00180 0.51 -0.5
41,252 - DZA65_RS00180 0.51 +1.0
41,252 - DZA65_RS00180 0.51 -1.2
41,252 - DZA65_RS00180 0.51 -0.3
41,252 - DZA65_RS00180 0.51 -0.2
41,252 - DZA65_RS00180 0.51 -0.2
41,252 - DZA65_RS00180 0.51 +1.6
41,307 + DZA65_RS00180 0.54 +1.3
41,307 + DZA65_RS00180 0.54 -0.7
41,308 - DZA65_RS00180 0.54 -0.6
41,308 - -0.4
41,332 + DZA65_RS00180 0.56 -1.1
41,332 + DZA65_RS00180 0.56 -0.5
41,332 + DZA65_RS00180 0.56 -1.4
41,332 + DZA65_RS00180 0.56 -1.0
41,333 - DZA65_RS00180 0.56 -0.8
41,333 - DZA65_RS00180 0.56 +0.3
41,333 - DZA65_RS00180 0.56 -1.0
41,333 - DZA65_RS00180 0.56 +0.2
41,333 - DZA65_RS00180 0.56 +0.2
41,333 - DZA65_RS00180 0.56 -0.4
41,333 - DZA65_RS00180 0.56 +0.6
41,333 - DZA65_RS00180 0.56 -0.1
41,350 + +1.6
41,350 + DZA65_RS00180 0.57 +0.0
41,350 + DZA65_RS00180 0.57 +1.3
41,351 - DZA65_RS00180 0.57 -1.1
41,351 - DZA65_RS00180 0.57 +0.6
41,351 - DZA65_RS00180 0.57 -0.5

Or see this region's nucleotide sequence