Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00150 and DZA65_RS00155 are separated by 92 nucleotides DZA65_RS00155 and DZA65_RS00160 overlap by 4 nucleotides
DZA65_RS00150: DZA65_RS00150 - glucokinase, at 33,650 to 34,618
_RS00150
DZA65_RS00155: DZA65_RS00155 - alkylhydroperoxidase domain protein, at 34,711 to 35,829
_RS00155
DZA65_RS00160: DZA65_RS00160 - putative FMN-dependent luciferase-like monooxygenase, at 35,826 to 36,875
_RS00160
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.739 kb on + strand at 33.740 kb on - strand at 33.740 kb on - strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.781 kb on + strand, within DZA65_RS00150 at 33.781 kb on + strand, within DZA65_RS00150 at 33.782 kb on - strand, within DZA65_RS00150 at 33.789 kb on + strand, within DZA65_RS00150 at 33.789 kb on + strand, within DZA65_RS00150 at 33.790 kb on - strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.817 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.832 kb on + strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 33.833 kb on - strand, within DZA65_RS00150 at 34.049 kb on + strand, within DZA65_RS00150 at 34.050 kb on - strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.243 kb on + strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.244 kb on - strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.427 kb on + strand, within DZA65_RS00150 at 34.428 kb on - strand, within DZA65_RS00150 at 34.428 kb on - strand, within DZA65_RS00150 at 34.586 kb on + strand at 34.587 kb on - strand at 34.587 kb on - strand at 34.587 kb on - strand at 34.616 kb on + strand at 34.617 kb on - strand at 34.963 kb on + strand, within DZA65_RS00155 at 34.963 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.021 kb on + strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.022 kb on - strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.025 kb on + strand, within DZA65_RS00155 at 35.026 kb on - strand, within DZA65_RS00155 at 35.026 kb on - strand, within DZA65_RS00155 at 35.094 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.096 kb on + strand, within DZA65_RS00155 at 35.097 kb on - strand, within DZA65_RS00155 at 35.097 kb on - strand, within DZA65_RS00155 at 35.121 kb on + strand, within DZA65_RS00155 at 35.121 kb on + strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.122 kb on - strand, within DZA65_RS00155 at 35.165 kb on + strand, within DZA65_RS00155 at 35.165 kb on + strand, within DZA65_RS00155 at 35.166 kb on - strand, within DZA65_RS00155 at 35.166 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.432 kb on - strand, within DZA65_RS00155 at 35.451 kb on + strand, within DZA65_RS00155 at 35.677 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.704 kb on + strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.705 kb on - strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.714 kb on + strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand, within DZA65_RS00155 at 35.715 kb on - strand at 35.727 kb on + strand at 35.728 kb on - strand at 35.728 kb on - strand at 35.728 kb on - strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.799 kb on + strand at 35.800 kb on - strand at 35.800 kb on - strand at 35.800 kb on - strand at 35.803 kb on + strand at 35.803 kb on + strand at 35.803 kb on + strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.804 kb on - strand at 35.861 kb on + strand at 35.862 kb on - strand at 35.862 kb on - strand at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 35.939 kb on + strand, within DZA65_RS00160 at 36.241 kb on + strand, within DZA65_RS00160 at 36.242 kb on - strand, within DZA65_RS00160 at 36.278 kb on + strand, within DZA65_RS00160 at 36.278 kb on + strand, within DZA65_RS00160 at 36.585 kb on + strand, within DZA65_RS00160 at 36.586 kb on - strand, within DZA65_RS00160 at 36.586 kb on - strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.594 kb on + strand, within DZA65_RS00160 at 36.595 kb on - strand, within DZA65_RS00160 at 36.595 kb on - strand, within DZA65_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 33,739 + +0.1 33,740 - +0.1 33,740 - +1.6 33,746 + +0.1 33,746 + -0.3 33,746 + +0.1 33,746 + -0.4 33,781 + DZA65_RS00150 0.14 +0.3 33,781 + DZA65_RS00150 0.14 -0.2 33,782 - DZA65_RS00150 0.14 -0.2 33,789 + DZA65_RS00150 0.14 -0.3 33,789 + DZA65_RS00150 0.14 +0.6 33,790 - DZA65_RS00150 0.14 +0.0 33,817 + DZA65_RS00150 0.17 +1.6 33,817 + DZA65_RS00150 0.17 -0.0 33,817 + DZA65_RS00150 0.17 -0.8 33,832 + DZA65_RS00150 0.19 -1.3 33,832 + DZA65_RS00150 0.19 +0.3 33,832 + DZA65_RS00150 0.19 -0.2 33,832 + DZA65_RS00150 0.19 +1.9 33,832 + DZA65_RS00150 0.19 -1.1 33,833 - DZA65_RS00150 0.19 +0.7 33,833 - DZA65_RS00150 0.19 -1.9 33,833 - DZA65_RS00150 0.19 +0.5 33,833 - DZA65_RS00150 0.19 -0.4 34,049 + DZA65_RS00150 0.41 -0.1 34,050 - DZA65_RS00150 0.41 -0.4 34,243 + DZA65_RS00150 0.61 +1.1 34,243 + DZA65_RS00150 0.61 +0.9 34,243 + DZA65_RS00150 0.61 -0.1 34,243 + DZA65_RS00150 0.61 -0.1 34,243 + DZA65_RS00150 0.61 +0.3 34,243 + DZA65_RS00150 0.61 -1.4 34,244 - DZA65_RS00150 0.61 -0.5 34,244 - DZA65_RS00150 0.61 -0.2 34,244 - DZA65_RS00150 0.61 -0.7 34,244 - DZA65_RS00150 0.61 -0.1 34,244 - DZA65_RS00150 0.61 -0.3 34,244 - DZA65_RS00150 0.61 -0.7 34,427 + DZA65_RS00150 0.80 -0.3 34,427 + DZA65_RS00150 0.80 -0.2 34,427 + DZA65_RS00150 0.80 -0.1 34,427 + DZA65_RS00150 0.80 +0.3 34,427 + DZA65_RS00150 0.80 -0.4 34,427 + DZA65_RS00150 0.80 +0.0 34,427 + DZA65_RS00150 0.80 +0.8 34,427 + DZA65_RS00150 0.80 +1.4 34,428 - DZA65_RS00150 0.80 +0.0 34,428 - DZA65_RS00150 0.80 -1.4 34,586 + -0.3 34,587 - -0.4 34,587 - -0.4 34,587 - -0.8 34,616 + -0.7 34,617 - +0.2 34,963 + DZA65_RS00155 0.23 +0.1 34,963 + DZA65_RS00155 0.23 -0.1 35,021 + DZA65_RS00155 0.28 +0.0 35,021 + DZA65_RS00155 0.28 +1.0 35,021 + DZA65_RS00155 0.28 -0.6 35,022 - DZA65_RS00155 0.28 -0.7 35,022 - DZA65_RS00155 0.28 -0.3 35,022 - DZA65_RS00155 0.28 +0.3 35,022 - DZA65_RS00155 0.28 -1.6 35,025 + DZA65_RS00155 0.28 -0.3 35,025 + DZA65_RS00155 0.28 -0.8 35,025 + DZA65_RS00155 0.28 +0.0 35,025 + DZA65_RS00155 0.28 +0.1 35,025 + DZA65_RS00155 0.28 -0.6 35,025 + DZA65_RS00155 0.28 +0.3 35,026 - DZA65_RS00155 0.28 -0.7 35,026 - DZA65_RS00155 0.28 -0.3 35,094 + DZA65_RS00155 0.34 -0.8 35,096 + DZA65_RS00155 0.34 -1.1 35,096 + DZA65_RS00155 0.34 -0.7 35,096 + DZA65_RS00155 0.34 -0.2 35,096 + DZA65_RS00155 0.34 +0.0 35,097 - DZA65_RS00155 0.34 -0.9 35,097 - DZA65_RS00155 0.34 -0.7 35,121 + DZA65_RS00155 0.37 -1.2 35,121 + DZA65_RS00155 0.37 -0.4 35,122 - DZA65_RS00155 0.37 -0.8 35,122 - DZA65_RS00155 0.37 -0.1 35,122 - DZA65_RS00155 0.37 -0.7 35,122 - DZA65_RS00155 0.37 +0.3 35,165 + DZA65_RS00155 0.41 -0.2 35,165 + DZA65_RS00155 0.41 +0.9 35,166 - DZA65_RS00155 0.41 -1.6 35,166 - DZA65_RS00155 0.41 -0.4 35,432 - DZA65_RS00155 0.64 +0.3 35,432 - DZA65_RS00155 0.64 -0.4 35,432 - DZA65_RS00155 0.64 -1.4 35,451 + DZA65_RS00155 0.66 +0.3 35,677 + DZA65_RS00155 0.86 +0.0 35,704 + DZA65_RS00155 0.89 -0.7 35,704 + DZA65_RS00155 0.89 -0.9 35,704 + DZA65_RS00155 0.89 -0.4 35,704 + DZA65_RS00155 0.89 -0.5 35,704 + DZA65_RS00155 0.89 -0.9 35,705 - DZA65_RS00155 0.89 +0.3 35,705 - DZA65_RS00155 0.89 -1.2 35,705 - DZA65_RS00155 0.89 +0.0 35,705 - DZA65_RS00155 0.89 +0.3 35,714 + DZA65_RS00155 0.90 -1.0 35,714 + DZA65_RS00155 0.90 -0.4 35,714 + DZA65_RS00155 0.90 +0.1 35,714 + DZA65_RS00155 0.90 -0.7 35,714 + DZA65_RS00155 0.90 +0.0 35,714 + DZA65_RS00155 0.90 -0.5 35,714 + DZA65_RS00155 0.90 -0.4 35,714 + DZA65_RS00155 0.90 -1.1 35,714 + DZA65_RS00155 0.90 +0.1 35,714 + DZA65_RS00155 0.90 +0.0 35,714 + DZA65_RS00155 0.90 +0.7 35,714 + DZA65_RS00155 0.90 +0.6 35,714 + DZA65_RS00155 0.90 +1.6 35,714 + DZA65_RS00155 0.90 -0.9 35,714 + DZA65_RS00155 0.90 -0.4 35,715 - DZA65_RS00155 0.90 +0.2 35,715 - DZA65_RS00155 0.90 -0.5 35,715 - DZA65_RS00155 0.90 +1.0 35,715 - DZA65_RS00155 0.90 -0.1 35,715 - DZA65_RS00155 0.90 -0.4 35,715 - DZA65_RS00155 0.90 +0.0 35,715 - +0.6 35,727 + -0.3 35,728 - -0.4 35,728 - -0.6 35,728 - -0.6 35,799 + -2.0 35,799 + -0.5 35,799 + +0.1 35,799 + -0.2 35,800 - -1.4 35,800 - -0.7 35,800 - -1.3 35,803 + -1.2 35,803 + +0.2 35,803 + -1.0 35,804 - -2.0 35,804 - -1.6 35,804 - +0.0 35,804 - +1.2 35,861 + -0.4 35,862 - +0.3 35,862 - +1.3 35,939 + DZA65_RS00160 0.11 +0.2 35,939 + DZA65_RS00160 0.11 -0.2 35,939 + DZA65_RS00160 0.11 -0.8 35,939 + DZA65_RS00160 0.11 +0.6 36,241 + DZA65_RS00160 0.40 +0.5 36,242 - DZA65_RS00160 0.40 -0.4 36,278 + DZA65_RS00160 0.43 -1.4 36,278 + DZA65_RS00160 0.43 -0.5 36,585 + DZA65_RS00160 0.72 -0.3 36,586 - DZA65_RS00160 0.72 -1.5 36,586 - DZA65_RS00160 0.72 -0.5 36,594 + DZA65_RS00160 0.73 +1.2 36,594 + DZA65_RS00160 0.73 +1.6 36,594 + DZA65_RS00160 0.73 -0.1 36,594 + DZA65_RS00160 0.73 -0.6 36,595 - DZA65_RS00160 0.73 -0.2 36,595 - DZA65_RS00160 0.73 -0.4
Or see this region's nucleotide sequence