Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21550

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,808,313	+		HGI48_RS21545	0.33	+0.3
4,808,313	+		HGI48_RS21545	0.33	+0.2
4,808,313	+		HGI48_RS21545	0.33	-0.0
4,808,313	+		HGI48_RS21545	0.33	-0.7
4,808,314	-		HGI48_RS21545	0.33	-0.3
4,808,314	-		HGI48_RS21545	0.33	-1.0
4,808,314	-		HGI48_RS21545	0.33	+0.0
4,808,314	-		HGI48_RS21545	0.33	+0.5
4,808,314	-		HGI48_RS21545	0.33	-0.1
4,808,314	-		HGI48_RS21545	0.33	+0.8
4,808,314	-				+1.9
4,808,314	-		HGI48_RS21545	0.33	+0.1
4,808,399	+		HGI48_RS21545	0.39	+0.1
4,808,399	+		HGI48_RS21545	0.39	+0.6
4,808,399	+		HGI48_RS21545	0.39	-0.3
4,808,399	+		HGI48_RS21545	0.39	-2.2
4,808,400	-		HGI48_RS21545	0.39	-0.7
4,808,400	-				+0.7
4,808,400	-		HGI48_RS21545	0.39	-2.4
4,808,446	+		HGI48_RS21545	0.43	+1.3
4,808,463	+		HGI48_RS21545	0.44	-0.9
4,808,463	+		HGI48_RS21545	0.44	+0.3
4,808,463	+		HGI48_RS21545	0.44	-0.7
4,808,511	+		HGI48_RS21545	0.47	-0.3
4,808,511	+				+0.3
4,808,512	-				+1.9
4,808,573	+		HGI48_RS21545	0.51	-0.8
4,808,574	-		HGI48_RS21545	0.52	-0.6
4,808,574	-		HGI48_RS21545	0.52	-0.2
4,808,627	+		HGI48_RS21545	0.55	-0.5
4,808,638	+		HGI48_RS21545	0.56	-1.6
4,808,698	+		HGI48_RS21545	0.60	-0.4
4,808,698	+		HGI48_RS21545	0.60	-1.4
4,808,698	+		HGI48_RS21545	0.60	-0.5
4,808,698	+		HGI48_RS21545	0.60	-1.0
4,808,699	-		HGI48_RS21545	0.60	+0.9
4,808,699	-				+0.7
4,808,699	-		HGI48_RS21545	0.60	-0.7
4,808,699	-		HGI48_RS21545	0.60	-0.9
4,808,701	+		HGI48_RS21545	0.60	-0.9
4,808,771	-				-0.3
4,808,771	-		HGI48_RS21545	0.65	-1.9
4,808,771	-		HGI48_RS21545	0.65	-0.7
4,808,896	+		HGI48_RS21545	0.74	+1.8
4,808,896	+		HGI48_RS21545	0.74	-1.9
4,808,899	+		HGI48_RS21545	0.74	-0.8
4,808,899	+		HGI48_RS21545	0.74	-3.7
4,808,899	+		HGI48_RS21545	0.74	-0.5
4,808,900	-		HGI48_RS21545	0.74	-0.3
4,808,900	-		HGI48_RS21545	0.74	-3.1
4,808,900	-		HGI48_RS21545	0.74	+0.7
4,808,900	-		HGI48_RS21545	0.74	-1.1
4,808,900	-		HGI48_RS21545	0.74	-1.0
4,808,900	-		HGI48_RS21545	0.74	+0.3
4,808,907	-		HGI48_RS21545	0.75	-0.5
4,808,907	-		HGI48_RS21545	0.75	-0.2
4,808,926	+		HGI48_RS21545	0.76	-1.0
4,808,927	-		HGI48_RS21545	0.76	+0.9
4,808,927	-		HGI48_RS21545	0.76	+0.3
4,808,931	+		HGI48_RS21545	0.76	+0.9
4,808,931	+		HGI48_RS21545	0.76	-1.7
4,808,931	+		HGI48_RS21545	0.76	-0.2
4,808,931	+		HGI48_RS21545	0.76	-0.1
4,808,931	+		HGI48_RS21545	0.76	-0.9
4,808,931	+		HGI48_RS21545	0.76	-0.6
4,808,932	-		HGI48_RS21545	0.76	-1.2
4,808,932	-		HGI48_RS21545	0.76	-1.7
4,808,948	+		HGI48_RS21545	0.78	-0.3
4,809,032	+		HGI48_RS21545	0.83	-0.7
4,809,033	-		HGI48_RS21545	0.83	-1.0
4,809,053	+		HGI48_RS21545	0.85	+0.8
4,809,053	+		HGI48_RS21545	0.85	+0.3
4,809,053	+		HGI48_RS21545	0.85	+1.3
4,809,053	+				-0.3
4,809,054	-				+1.7
4,809,054	-		HGI48_RS21545	0.85	+4.5
4,809,054	-		HGI48_RS21545	0.85	+0.3
4,809,126	-		HGI48_RS21545	0.90	+0.5
4,809,131	+				-0.2
4,809,131	+				-1.7
4,809,132	-				-1.4
4,809,156	-				+0.6
4,809,172	+				+2.9
4,809,172	+				+1.6
4,809,172	+				+1.3
4,809,173	-				-0.2
4,809,173	-				-1.2
4,809,173	-				-0.8
4,809,174	+				+0.6
4,809,174	+				-0.2
4,809,174	+				-0.6
4,809,174	+				-0.3
4,809,174	+				-0.5
4,809,175	-				-1.3
4,809,175	-				-0.0
4,809,175	-				-0.0
4,809,175	-				-0.0
4,809,185	+				-0.1
4,809,186	-				+1.0
4,809,186	-				+0.3
4,809,207	+				-0.1
4,809,207	+				+0.3
4,809,207	+				+0.3
4,809,207	+				-0.3
4,809,207	+				-0.6
4,809,207	+				+0.1
4,809,208	-				-1.0
4,809,208	-				+1.2
4,809,208	-				-1.0
4,809,214	+				-0.6
4,809,215	-				+1.0
4,809,215	-				-0.5
4,809,234	+				+0.3
4,809,234	+				+0.3
4,809,234	+				+0.7
4,809,234	+				+0.1
4,809,235	-				-0.5
4,809,235	-				-1.3
4,809,235	-				-0.5
4,809,235	-				-0.2
4,809,235	-				-0.2
4,809,284	-				+0.6
4,809,284	-				+0.3
4,809,300	+				-0.3
4,809,301	-				+0.5
4,809,301	-				-1.5
4,809,301	-				-2.2
4,809,301	-				+0.7
4,809,301	-				-0.8
4,809,301	-				+1.7
4,809,301	-				-1.7
4,809,301	-				+0.3
4,809,301	-				+0.3
4,809,302	+				-0.7
4,809,302	+				-0.6
4,809,302	+				-1.0
4,809,303	-				-0.3
4,809,303	-				-0.0
4,809,303	-				+0.3
4,809,303	-				-1.6
4,809,312	+				-2.5
4,809,313	-				-0.2
4,809,313	-				-2.0
4,809,313	-				-0.3
4,809,334	-				+1.3
4,809,334	-				-1.0
4,809,334	-				-1.5
4,809,375	+				+0.2
4,809,375	+				-0.3
4,809,376	-				+0.9
4,809,424	+		HGI48_RS21550	0.12	+0.2
4,809,424	+		HGI48_RS21550	0.12	-1.0
4,809,490	-		HGI48_RS21550	0.17	+3.1
4,809,490	-		HGI48_RS21550	0.17	-0.6
4,809,490	-		HGI48_RS21550	0.17	-1.0
4,809,490	-		HGI48_RS21550	0.17	+0.7
4,809,490	-		HGI48_RS21550	0.17	+0.6
4,809,500	-		HGI48_RS21550	0.18	-1.5
4,809,500	-		HGI48_RS21550	0.18	-1.6
4,809,524	-		HGI48_RS21550	0.20	+0.2
4,809,551	-		HGI48_RS21550	0.22	-0.7
4,809,648	+		HGI48_RS21550	0.29	-0.7
4,809,648	+		HGI48_RS21550	0.29	-0.0
4,809,649	-		HGI48_RS21550	0.30	-0.8
4,809,649	-		HGI48_RS21550	0.30	-1.3
4,809,689	+		HGI48_RS21550	0.33	+0.3
4,809,690	-				-0.3
4,809,723	-		HGI48_RS21550	0.35	+1.3
4,809,747	+		HGI48_RS21550	0.37	-1.3
4,809,748	-		HGI48_RS21550	0.37	-0.0
4,809,748	-		HGI48_RS21550	0.37	+1.0
4,809,748	-		HGI48_RS21550	0.37	+0.3
4,809,748	-		HGI48_RS21550	0.37	-0.2
4,809,768	+		HGI48_RS21550	0.39	-0.5
4,809,768	+		HGI48_RS21550	0.39	-0.5
4,809,768	+		HGI48_RS21550	0.39	+1.3
4,809,768	+		HGI48_RS21550	0.39	+0.9
4,809,769	-		HGI48_RS21550	0.39	-0.9
4,809,785	+		HGI48_RS21550	0.40	-1.5
4,809,825	-		HGI48_RS21550	0.43	+0.6
4,809,825	-		HGI48_RS21550	0.43	+0.8
4,809,852	-				+1.3
4,809,859	-		HGI48_RS21550	0.46	+0.1
4,809,893	+		HGI48_RS21550	0.48	+0.4
4,809,893	+				-0.3
4,809,893	+		HGI48_RS21550	0.48	-0.9
4,809,894	-		HGI48_RS21550	0.48	-0.8
4,809,895	+		HGI48_RS21550	0.48	+0.3
4,809,895	+		HGI48_RS21550	0.48	+0.6
4,809,895	+		HGI48_RS21550	0.48	+1.6
4,809,895	+		HGI48_RS21550	0.48	-1.0
4,809,895	+		HGI48_RS21550	0.48	-0.6
4,809,896	-		HGI48_RS21550	0.48	-0.9
4,809,896	-		HGI48_RS21550	0.48	-0.4
4,809,896	-		HGI48_RS21550	0.48	-2.3
4,809,896	-		HGI48_RS21550	0.48	-1.1
4,809,896	-		HGI48_RS21550	0.48	-0.2
4,809,896	-		HGI48_RS21550	0.48	-2.2
4,809,896	-		HGI48_RS21550	0.48	-0.5
4,809,931	+		HGI48_RS21550	0.51	+0.6
4,809,931	+		HGI48_RS21550	0.51	-0.3
4,809,931	+		HGI48_RS21550	0.51	-0.7
4,809,931	+		HGI48_RS21550	0.51	-1.0
4,809,932	-		HGI48_RS21550	0.51	-0.5
4,809,932	-				-0.3
4,809,932	-		HGI48_RS21550	0.51	-1.9
4,809,932	-		HGI48_RS21550	0.51	-0.3
4,809,932	-		HGI48_RS21550	0.51	-0.1
4,809,952	-		HGI48_RS21550	0.53	+0.1
4,809,956	+		HGI48_RS21550	0.53	-0.6
4,810,033	+		HGI48_RS21550	0.59	-0.2
4,810,033	+		HGI48_RS21550	0.59	-0.3
4,810,034	-		HGI48_RS21550	0.59	+0.3
4,810,067	+		HGI48_RS21550	0.61	-1.0
4,810,071	+		HGI48_RS21550	0.62	-1.3
4,810,071	+		HGI48_RS21550	0.62	-1.3
4,810,072	-		HGI48_RS21550	0.62	-0.7
4,810,182	-		HGI48_RS21550	0.70	-1.7
4,810,211	+		HGI48_RS21550	0.72	+1.0
4,810,211	+		HGI48_RS21550	0.72	+0.7
4,810,211	+		HGI48_RS21550	0.72	-1.9
4,810,230	-		HGI48_RS21550	0.74	-0.7
4,810,267	+		HGI48_RS21550	0.77	+0.1
4,810,267	+				+0.7
4,810,267	+		HGI48_RS21550	0.77	-0.8
4,810,267	+		HGI48_RS21550	0.77	+1.3
4,810,268	-		HGI48_RS21550	0.77	-1.5
4,810,268	-		HGI48_RS21550	0.77	-0.3
4,810,268	-		HGI48_RS21550	0.77	-0.0
4,810,268	-		HGI48_RS21550	0.77	-0.5
4,810,312	+		HGI48_RS21550	0.80	+0.6
4,810,337	-		HGI48_RS21550	0.82	-0.3
4,810,337	-		HGI48_RS21550	0.82	-1.3
4,810,338	+		HGI48_RS21550	0.82	-1.3
4,810,339	-		HGI48_RS21550	0.82	-0.2
4,810,374	+		HGI48_RS21550	0.85	-0.6
4,810,374	+		HGI48_RS21550	0.85	-1.0
4,810,374	+		HGI48_RS21550	0.85	+0.1
4,810,374	+		HGI48_RS21550	0.85	-2.6
4,810,374	+		HGI48_RS21550	0.85	+0.0
4,810,374	+		HGI48_RS21550	0.85	-1.5
4,810,374	+		HGI48_RS21550	0.85	-0.1
4,810,374	+		HGI48_RS21550	0.85	+0.0
4,810,375	-		HGI48_RS21550	0.85	+0.0
4,810,375	-		HGI48_RS21550	0.85	-0.5
4,810,375	-		HGI48_RS21550	0.85	-1.0
4,810,375	-		HGI48_RS21550	0.85	+0.6
4,810,466	+				-0.3
4,810,467	-				-0.3
4,810,508	+				-1.0
4,810,511	+				-0.7
4,810,511	+				-1.1
4,810,511	+				-0.0
4,810,512	-				+0.1
4,810,512	-				-0.3
4,810,512	-				-1.2
4,810,512	-				-0.3
4,810,523	-				-0.8
4,810,523	-				-1.4
4,810,529	+				+0.3
4,810,529	+				+0.3
4,810,535	+				+1.0
4,810,535	+				-1.5
4,810,535	+				-0.3
4,810,536	-				-0.2
4,810,536	-				-2.3
4,810,547	+				-0.6
4,810,547	+				+0.3
4,810,548	-				+2.0
4,810,551	+				-0.3
4,810,552	-				-1.5
4,810,574	+				+0.7
4,810,592	-				+1.9
4,810,606	+				+0.3
4,810,606	+				+0.3
4,810,677	+		HGI48_RS21555	0.25	-0.7
4,810,677	+		HGI48_RS21555	0.25	-0.9
4,810,678	-		HGI48_RS21555	0.26	+1.1
4,810,678	-		HGI48_RS21555	0.26	+0.7
4,810,721	+		HGI48_RS21555	0.36	-0.9
4,810,721	+		HGI48_RS21555	0.36	-0.7
4,810,722	-		HGI48_RS21555	0.36	-0.9
4,810,722	-		HGI48_RS21555	0.36	-0.6
4,810,722	-		HGI48_RS21555	0.36	-0.6
4,810,722	-		HGI48_RS21555	0.36	+0.6
4,810,728	+		HGI48_RS21555	0.38	-0.6
4,810,728	+		HGI48_RS21555	0.38	-2.0
4,810,729	-		HGI48_RS21555	0.38	-0.9
4,810,759	-				-0.3
4,810,759	-		HGI48_RS21555	0.45	+0.5
4,810,768	-		HGI48_RS21555	0.47	+0.3
4,810,781	-		HGI48_RS21555	0.50	+0.3
4,810,781	-		HGI48_RS21555	0.50	+0.6
4,810,786	+		HGI48_RS21555	0.52	+0.1
4,810,786	+		HGI48_RS21555	0.52	-0.3
4,810,786	+				-0.3
4,810,786	+		HGI48_RS21555	0.52	+0.3
4,810,787	-				+2.0
4,810,787	-		HGI48_RS21555	0.52	+1.3
4,810,789	+		HGI48_RS21555	0.52	-2.4
4,810,789	+		HGI48_RS21555	0.52	+0.6
4,810,789	+		HGI48_RS21555	0.52	+1.3
4,810,789	+		HGI48_RS21555	0.52	+0.3
4,810,789	+		HGI48_RS21555	0.52	-0.6
4,810,789	+		HGI48_RS21555	0.52	-0.3
4,810,789	+				-0.3
4,810,790	-		HGI48_RS21555	0.53	+0.1
4,810,790	-		HGI48_RS21555	0.53	-1.4
4,810,790	-		HGI48_RS21555	0.53	-0.5
4,810,790	-		HGI48_RS21555	0.53	-0.0
4,810,790	-		HGI48_RS21555	0.53	+0.3
4,810,832	-		HGI48_RS21555	0.63	-0.3
4,810,832	-				+0.7
4,810,843	+		HGI48_RS21555	0.65	-2.0
4,810,853	+		HGI48_RS21555	0.68	-0.0
4,810,894	-		HGI48_RS21555	0.77	+0.5
4,810,894	-		HGI48_RS21555	0.77	+1.0
4,811,022	+				+1.1
4,811,022	+				+0.7
4,811,023	-				+0.4
4,811,023	-				+1.5
4,811,023	-				+2.7
4,811,037	+				+0.7
4,811,037	+				+1.3
4,811,037	+				+0.3
4,811,037	+				+0.7
4,811,037	+				-0.9
4,811,037	+				+0.3
4,811,037	+				+2.0
4,811,037	+				-0.7
4,811,038	-				+0.3
4,811,038	-				+0.8
4,811,038	-				+0.3
4,811,038	-				+0.7
4,811,044	+				+0.3
4,811,044	+				-0.6
4,811,044	+				+1.5
4,811,044	+				-0.2
4,811,044	+				-0.3
4,811,044	+				+0.3
4,811,044	+				-0.6
4,811,045	-				-0.1
4,811,045	-				-0.2
4,811,045	-				+1.5
4,811,045	-				-0.6
4,811,045	-				-2.3
4,811,045	-				+2.3
4,811,078	+				-0.6
4,811,078	+				-0.6
4,811,084	+				-0.0
4,811,085	-				-0.7
4,811,085	-				-1.4
4,811,098	+				-1.8
4,811,118	-				+0.9
4,811,144	+				-0.3
4,811,170	+				-0.7
4,811,170	+				-1.3
4,811,170	+				-0.7
4,811,170	+				+0.1
4,811,170	+				-0.2
4,811,179	+				-0.1
4,811,179	+				-0.5
4,811,180	-				-2.0
4,811,183	+				+1.3
4,811,183	+				+1.8
4,811,183	+				+1.3
4,811,183	+				+1.3
4,811,183	+				-1.9
4,811,184	-				+1.0
4,811,184	-				-0.7
4,811,184	-				+1.3
4,811,184	-				+0.9
4,811,184	-				-0.0
4,811,187	-				-0.1
4,811,187	-				-1.6
4,811,193	+				-0.2
4,811,193	+				+0.3
4,811,212	+				+0.6
4,811,212	+				+0.1
4,811,232	+				-0.3
4,811,232	+				+2.0
4,811,233	-				+0.1
4,811,233	-				+0.3
4,811,233	-				-0.0
4,811,250	+				+1.7
4,811,250	+				+1.1
4,811,250	+				-1.0
4,811,250	+				+0.3
4,811,250	+				-1.3
4,811,250	+				-1.3
4,811,250	+				+0.9
4,811,251	-				+0.9
4,811,251	-				-0.9
4,811,251	-				+0.5
4,811,251	-				+0.2
4,811,270	+				+1.3
4,811,270	+				+0.5
4,811,270	+				-0.4
4,811,270	+				-1.0
4,811,270	+				-0.5
4,811,270	+				-2.0
4,811,270	+				+0.1
4,811,271	-				-0.0
4,811,271	-				+0.3
4,811,271	-				-0.3
4,811,271	-				-0.5
4,811,271	-				-0.3
4,811,271	-				-1.5
4,811,274	+				-1.4
4,811,275	-				+0.4
4,811,275	-				+0.9
4,811,275	-				-1.1
4,811,292	-				+1.8
4,811,300	+				+1.3
4,811,300	+				-0.9
4,811,300	+				-0.7
4,811,300	+				-0.2
4,811,307	-				-1.7
4,811,412	+		HGI48_RS21560	0.12	-1.3
4,811,433	+		HGI48_RS21560	0.14	-0.1
4,811,433	+		HGI48_RS21560	0.14	+0.9
4,811,459	+		HGI48_RS21560	0.16	-0.5
4,811,460	-		HGI48_RS21560	0.16	-0.9
4,811,460	-				+1.3
4,811,460	-		HGI48_RS21560	0.16	-0.9
4,811,460	-		HGI48_RS21560	0.16	+0.9
4,811,463	+		HGI48_RS21560	0.16	-1.3
4,811,463	+		HGI48_RS21560	0.16	-1.9
4,811,463	+				-0.3
4,811,463	+		HGI48_RS21560	0.16	-1.5
4,811,464	-		HGI48_RS21560	0.17	-0.1
4,811,464	-		HGI48_RS21560	0.17	+0.8
4,811,464	-		HGI48_RS21560	0.17	-0.5