Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20855

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,657,701	-		HGI48_RS20850	0.77	+1.1
4,657,883	+		HGI48_RS20850	0.81	+0.1
4,657,884	-		HGI48_RS20850	0.81	+0.1
4,657,892	+		HGI48_RS20850	0.81	-0.3
4,657,892	+		HGI48_RS20850	0.81	+0.5
4,657,893	-		HGI48_RS20850	0.81	-1.3
4,657,993	+		HGI48_RS20850	0.84	-1.0
4,657,993	+		HGI48_RS20850	0.84	-0.0
4,658,021	+		HGI48_RS20850	0.85	-1.0
4,658,021	+		HGI48_RS20850	0.85	-1.9
4,658,021	+		HGI48_RS20850	0.85	-0.7
4,658,022	-				+0.3
4,658,118	+		HGI48_RS20850	0.87	+0.3
4,658,119	-		HGI48_RS20850	0.87	-0.2
4,658,141	+		HGI48_RS20850	0.88	+1.0
4,658,141	+		HGI48_RS20850	0.88	-0.7
4,658,141	+		HGI48_RS20850	0.88	-2.0
4,658,142	-		HGI48_RS20850	0.88	-0.2
4,658,142	-		HGI48_RS20850	0.88	+0.3
4,658,142	-		HGI48_RS20850	0.88	-0.4
4,658,144	+				+1.3
4,658,144	+		HGI48_RS20850	0.88	-0.9
4,658,144	+		HGI48_RS20850	0.88	-1.7
4,658,145	-		HGI48_RS20850	0.88	-0.1
4,658,145	-		HGI48_RS20850	0.88	-0.5
4,658,145	-		HGI48_RS20850	0.88	+0.5
4,658,145	-		HGI48_RS20850	0.88	-0.7
4,658,145	-		HGI48_RS20850	0.88	-0.2
4,658,217	+		HGI48_RS20850	0.90	-1.8
4,658,217	+		HGI48_RS20850	0.90	+0.1
4,658,384	+				+1.0
4,658,385	-				+1.3
4,658,385	-				-0.7
4,658,385	-				-1.1
4,658,385	-				+0.5
4,658,385	-				-0.0
4,658,399	+				-0.7
4,658,399	+				-1.3
4,658,400	-				+1.7
4,658,513	-				-0.5
4,658,608	+				+1.3
4,658,625	+				-0.3
4,658,625	+				+0.4
4,658,625	+				-0.3
4,658,625	+				-0.6
4,658,625	+				+0.5
4,658,626	-				+0.5
4,658,626	-				-0.3
4,658,626	-				-1.7
4,658,626	-				+0.1
4,658,626	-				+1.6
4,658,626	-				-2.3
4,658,626	-				+0.1
4,658,639	-				+0.3
4,658,779	+				-0.5
4,658,797	+				+0.4
4,658,797	+				-1.3
4,658,797	+				-0.7
4,658,797	+				-1.0
4,658,797	+				-0.7
4,658,798	-				+0.2
4,658,798	-				+0.8
4,658,798	-				+0.1
4,658,798	-				+0.1
4,658,923	+		HGI48_RS20855	0.11	-0.3
4,658,923	+		HGI48_RS20855	0.11	-0.7
4,658,924	-		HGI48_RS20855	0.11	+0.4
4,658,924	-		HGI48_RS20855	0.11	+0.3
4,658,924	-		HGI48_RS20855	0.11	-0.7
4,658,924	-		HGI48_RS20855	0.11	-2.3
4,658,924	-		HGI48_RS20855	0.11	-1.0
4,658,924	-		HGI48_RS20855	0.11	-1.9
4,658,935	-		HGI48_RS20855	0.12	+0.9
4,659,145	+		HGI48_RS20855	0.20	-1.3
4,659,146	-		HGI48_RS20855	0.20	-1.7
4,659,382	+		HGI48_RS20855	0.30	-0.1
4,659,424	+		HGI48_RS20855	0.31	+0.7
4,659,424	+		HGI48_RS20855	0.31	+1.3
4,659,559	+		HGI48_RS20855	0.37	+1.3
4,659,559	+				+0.7
4,659,559	+		HGI48_RS20855	0.37	-1.8
4,659,560	-		HGI48_RS20855	0.37	+1.4
4,659,560	-				+1.3
4,659,560	-		HGI48_RS20855	0.37	-0.6
4,659,577	+		HGI48_RS20855	0.38	-0.5
4,659,583	+		HGI48_RS20855	0.38	-3.1
4,659,584	-		HGI48_RS20855	0.38	-1.5
4,659,614	-		HGI48_RS20855	0.39	+1.9
4,659,614	-		HGI48_RS20855	0.39	+0.3
4,659,614	-		HGI48_RS20855	0.39	-1.0
4,659,725	-		HGI48_RS20855	0.43	-1.7
4,659,940	+		HGI48_RS20855	0.52	-1.7
4,659,940	+				+0.7
4,659,940	+		HGI48_RS20855	0.52	-0.4
4,659,941	-		HGI48_RS20855	0.52	+1.5
4,659,941	-		HGI48_RS20855	0.52	-1.9
4,659,941	-		HGI48_RS20855	0.52	-1.3
4,659,941	-		HGI48_RS20855	0.52	+1.6
4,660,075	+		HGI48_RS20855	0.57	-1.9
4,660,305	+		HGI48_RS20855	0.67	-0.6
4,660,305	+		HGI48_RS20855	0.67	-1.3
4,660,305	+		HGI48_RS20855	0.67	-0.4
4,660,305	+		HGI48_RS20855	0.67	+0.1
4,660,306	-		HGI48_RS20855	0.67	-0.9
4,660,306	-		HGI48_RS20855	0.67	+0.3
4,660,306	-		HGI48_RS20855	0.67	-1.5
4,660,306	-		HGI48_RS20855	0.67	+0.8
4,660,306	-		HGI48_RS20855	0.67	-0.1
4,660,306	-		HGI48_RS20855	0.67	-1.0
4,660,306	-				+0.7
4,660,438	+		HGI48_RS20855	0.72	-1.4
4,660,551	-		HGI48_RS20855	0.76	-0.7
4,660,551	-		HGI48_RS20855	0.76	-1.5
4,660,622	+		HGI48_RS20855	0.79	-0.0
4,660,622	+		HGI48_RS20855	0.79	-0.6
4,660,623	-				-0.3
4,660,623	-				-0.3
4,660,623	-		HGI48_RS20855	0.79	-1.2
4,660,623	-		HGI48_RS20855	0.79	+0.1
4,660,704	-		HGI48_RS20855	0.83	+0.8
4,660,742	+		HGI48_RS20855	0.84	-1.0
4,660,743	-		HGI48_RS20855	0.84	+0.8
4,661,297	+				-0.6
4,661,297	+				-1.7
4,661,298	-				+0.3
4,661,298	-				+1.0
4,661,500	+		HGI48_RS20860	0.17	+0.1
4,661,529	+		HGI48_RS20860	0.19	-0.4
4,661,664	+		HGI48_RS20860	0.25	+0.9
4,661,665	-		HGI48_RS20860	0.25	+0.3
4,661,665	-		HGI48_RS20860	0.25	-0.7
4,661,682	+				+0.3
4,661,682	+		HGI48_RS20860	0.26	+0.3
4,661,682	+				+1.3
4,661,682	+		HGI48_RS20860	0.26	-1.9
4,661,682	+				+0.7
4,661,683	-		HGI48_RS20860	0.26	-0.5
4,661,683	-		HGI48_RS20860	0.26	-0.5
4,661,683	-		HGI48_RS20860	0.26	-0.3
4,661,707	+		HGI48_RS20860	0.27	-1.0
4,661,860	+		HGI48_RS20860	0.35	+0.1
4,661,943	+		HGI48_RS20860	0.38	-0.9
4,661,943	+		HGI48_RS20860	0.38	-0.1
4,661,944	-		HGI48_RS20860	0.39	-0.8
4,661,944	-		HGI48_RS20860	0.39	-1.3
4,661,944	-		HGI48_RS20860	0.39	+2.3
4,662,004	+		HGI48_RS20860	0.41	+0.5
4,662,004	+		HGI48_RS20860	0.41	-0.7
4,662,004	+		HGI48_RS20860	0.41	-1.3
4,662,004	+		HGI48_RS20860	0.41	-2.6
4,662,004	+		HGI48_RS20860	0.41	-2.3
4,662,004	+		HGI48_RS20860	0.41	+1.0
4,662,004	+		HGI48_RS20860	0.41	-0.0
4,662,004	+		HGI48_RS20860	0.41	+0.3
4,662,005	-		HGI48_RS20860	0.41	+0.0
4,662,005	-		HGI48_RS20860	0.41	-1.5
4,662,005	-		HGI48_RS20860	0.41	+0.2
4,662,005	-		HGI48_RS20860	0.41	-0.7
4,662,005	-		HGI48_RS20860	0.41	-0.7
4,662,028	-		HGI48_RS20860	0.43	-0.4
4,662,096	+		HGI48_RS20860	0.46	-0.6
4,662,096	+		HGI48_RS20860	0.46	+0.9
4,662,096	+		HGI48_RS20860	0.46	-0.3
4,662,097	-		HGI48_RS20860	0.46	-0.2
4,662,097	-		HGI48_RS20860	0.46	-0.6