Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20420

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,563,275	-		HGI48_RS20415	0.30	+0.3
4,563,333	+		HGI48_RS20415	0.36	+0.3
4,563,333	+		HGI48_RS20415	0.36	-1.3
4,563,333	+		HGI48_RS20415	0.36	-1.0
4,563,333	+		HGI48_RS20415	0.36	+0.5
4,563,334	-		HGI48_RS20415	0.36	-1.0
4,563,450	+		HGI48_RS20415	0.49	-0.3
4,563,450	+		HGI48_RS20415	0.49	-1.2
4,563,466	+		HGI48_RS20415	0.51	-1.0
4,563,513	+		HGI48_RS20415	0.56	-0.9
4,563,513	+		HGI48_RS20415	0.56	-0.0
4,563,513	+		HGI48_RS20415	0.56	-0.5
4,563,513	+		HGI48_RS20415	0.56	-0.0
4,563,513	+		HGI48_RS20415	0.56	-1.6
4,563,513	+		HGI48_RS20415	0.56	-0.4
4,563,513	+		HGI48_RS20415	0.56	+0.3
4,563,513	+		HGI48_RS20415	0.56	-0.7
4,563,513	+		HGI48_RS20415	0.56	-1.2
4,563,513	+		HGI48_RS20415	0.56	+0.3
4,563,513	+				-0.3
4,563,513	+		HGI48_RS20415	0.56	-0.1
4,563,513	+		HGI48_RS20415	0.56	-1.9
4,563,513	+		HGI48_RS20415	0.56	-0.9
4,563,513	+		HGI48_RS20415	0.56	-0.3
4,563,513	+		HGI48_RS20415	0.56	+0.3
4,563,514	-		HGI48_RS20415	0.56	+0.6
4,563,514	-		HGI48_RS20415	0.56	-0.2
4,563,514	-		HGI48_RS20415	0.56	-2.0
4,563,514	-		HGI48_RS20415	0.56	-0.9
4,563,514	-		HGI48_RS20415	0.56	-0.0
4,563,514	-		HGI48_RS20415	0.56	-1.4
4,563,514	-		HGI48_RS20415	0.56	-0.5
4,563,514	-		HGI48_RS20415	0.56	-1.0
4,563,514	-		HGI48_RS20415	0.56	+0.6
4,563,514	-		HGI48_RS20415	0.56	-0.7
4,563,514	-		HGI48_RS20415	0.56	+0.6
4,563,514	-		HGI48_RS20415	0.56	+0.5
4,563,514	-		HGI48_RS20415	0.56	-2.3
4,563,514	-		HGI48_RS20415	0.56	-0.5
4,563,589	-		HGI48_RS20415	0.65	-2.4
4,563,589	-		HGI48_RS20415	0.65	-1.9
4,563,727	-				-0.3
4,563,772	+		HGI48_RS20415	0.85	+0.1
4,563,773	-		HGI48_RS20415	0.85	-0.5
4,563,773	-		HGI48_RS20415	0.85	+0.6
4,563,849	-				+0.2
4,563,905	-				-0.5
4,563,905	-				+0.0
4,563,910	+				-0.8
4,563,911	-				+0.3
4,563,926	+				-0.2
4,563,936	-				-2.3
4,563,936	-				-0.3
4,564,019	+				+0.4
4,564,019	+				+0.2
4,564,019	+				+1.3
4,564,020	-				-0.6
4,564,023	+				+1.0
4,564,023	+				-1.2
4,564,023	+				+1.1
4,564,024	-				-0.9
4,564,024	-				-0.2
4,564,024	-				-0.9
4,564,024	-				-1.9
4,564,113	+				-0.7
4,564,113	+				+1.2
4,564,120	+				+0.3
4,564,120	+				-0.4
4,564,121	-				+0.8
4,564,121	-				-0.7
4,564,121	-				+1.3
4,564,122	+				-0.0
4,564,122	+				+0.3
4,564,176	+				-0.3
4,564,202	-				-1.3
4,564,246	-				+1.3
4,564,345	-				-2.0
4,564,372	+				+1.3
4,564,464	+				-0.9
4,564,465	-				-0.3
4,564,465	-				-0.3
4,564,465	-				+0.3
4,564,465	-				+0.3
4,564,613	+		HGI48_RS20420	0.15	+1.6
4,564,642	+		HGI48_RS20420	0.16	-0.8
4,564,642	+		HGI48_RS20420	0.16	-0.7
4,564,845	+		HGI48_RS20420	0.25	-0.9
4,564,845	+		HGI48_RS20420	0.25	-0.5
4,564,845	+		HGI48_RS20420	0.25	+1.3
4,564,845	+		HGI48_RS20420	0.25	-0.3
4,564,846	-		HGI48_RS20420	0.25	-0.7
4,564,846	-		HGI48_RS20420	0.25	+0.7
4,564,846	-		HGI48_RS20420	0.25	-0.1
4,564,846	-		HGI48_RS20420	0.25	+0.3
4,564,846	-		HGI48_RS20420	0.25	-0.5
4,564,882	-				+0.3
4,564,882	-		HGI48_RS20420	0.26	-0.7
4,564,882	-		HGI48_RS20420	0.26	-0.0
4,564,882	-		HGI48_RS20420	0.26	+0.1
4,564,929	+				+1.3
4,564,960	+		HGI48_RS20420	0.29	-1.9
4,564,986	+		HGI48_RS20420	0.30	-1.0
4,564,986	+		HGI48_RS20420	0.30	-0.4
4,564,986	+		HGI48_RS20420	0.30	-0.8
4,564,986	+		HGI48_RS20420	0.30	+0.1
4,564,987	-		HGI48_RS20420	0.31	-0.5
4,564,987	-		HGI48_RS20420	0.31	-1.7
4,564,987	-		HGI48_RS20420	0.31	-0.9
4,565,005	-		HGI48_RS20420	0.31	+0.3
4,565,058	+		HGI48_RS20420	0.33	-0.9
4,565,058	+		HGI48_RS20420	0.33	-1.5
4,565,059	-		HGI48_RS20420	0.33	+0.5
4,565,059	-		HGI48_RS20420	0.33	+1.1
4,565,158	-		HGI48_RS20420	0.38	+1.1
4,565,275	+		HGI48_RS20420	0.42	-0.4
4,565,275	+		HGI48_RS20420	0.42	-0.1
4,565,275	+		HGI48_RS20420	0.42	+1.2
4,565,275	+		HGI48_RS20420	0.42	-0.4
4,565,275	+		HGI48_RS20420	0.42	-1.3
4,565,275	+		HGI48_RS20420	0.42	+0.9
4,565,276	-		HGI48_RS20420	0.42	+0.3
4,565,276	-		HGI48_RS20420	0.42	+2.1
4,565,276	-		HGI48_RS20420	0.42	-1.3
4,565,276	-		HGI48_RS20420	0.42	-0.5
4,565,276	-		HGI48_RS20420	0.42	-0.2
4,565,392	+		HGI48_RS20420	0.47	-0.7
4,565,566	+		HGI48_RS20420	0.54	-0.3
4,565,586	+		HGI48_RS20420	0.55	-2.3
4,565,586	+		HGI48_RS20420	0.55	+1.6
4,565,586	+		HGI48_RS20420	0.55	-0.7
4,565,587	-		HGI48_RS20420	0.55	+0.3
4,565,587	-		HGI48_RS20420	0.55	+0.1
4,565,587	-		HGI48_RS20420	0.55	-0.7
4,565,587	-		HGI48_RS20420	0.55	-2.6
4,565,674	+		HGI48_RS20420	0.59	-1.0
4,565,675	-		HGI48_RS20420	0.59	-1.9
4,565,747	+		HGI48_RS20420	0.62	-0.9
4,565,747	+		HGI48_RS20420	0.62	+0.9
4,565,747	+		HGI48_RS20420	0.62	-0.7
4,565,811	+		HGI48_RS20420	0.64	-0.8
4,565,971	-		HGI48_RS20420	0.71	-0.1
4,566,043	-		HGI48_RS20420	0.74	-1.0
4,566,097	+		HGI48_RS20420	0.76	-1.4
4,566,098	-		HGI48_RS20420	0.76	+0.8
4,566,098	-		HGI48_RS20420	0.76	-0.1
4,566,313	-		HGI48_RS20420	0.85	+0.3
4,566,564	+				-1.0
4,566,564	+				-0.9
4,566,565	-				-0.0
4,566,594	+				-1.3
4,566,594	+				-1.7
4,566,616	+				-0.0
4,566,663	-				-2.0
4,566,663	-				-0.3
4,566,683	+				-0.7
4,566,683	+				-0.3
4,566,683	+				-0.5
4,566,684	-				-0.7
4,566,684	-				-0.3
4,566,759	+				+1.9
4,566,759	+				+0.1
4,566,759	+				-1.4
4,566,759	+				+0.6
4,566,760	-				-2.4
4,566,760	-				-1.9
4,566,760	-				-0.7
4,566,915	+		HGI48_RS20425	0.20	+0.4
4,566,944	-		HGI48_RS20425	0.23	+0.9
4,567,016	+				+1.3
4,567,016	+		HGI48_RS20425	0.29	-1.4
4,567,016	+		HGI48_RS20425	0.29	+0.1
4,567,016	+		HGI48_RS20425	0.29	-0.6
4,567,016	+		HGI48_RS20425	0.29	-0.3
4,567,016	+		HGI48_RS20425	0.29	-0.9
4,567,016	+		HGI48_RS20425	0.29	-0.7
4,567,016	+		HGI48_RS20425	0.29	-2.2
4,567,016	+		HGI48_RS20425	0.29	-0.9
4,567,016	+		HGI48_RS20425	0.29	-1.1
4,567,016	+		HGI48_RS20425	0.29	-1.7
4,567,016	+		HGI48_RS20425	0.29	-0.9
4,567,017	-		HGI48_RS20425	0.29	-0.9
4,567,017	-		HGI48_RS20425	0.29	+0.1
4,567,017	-				+1.3
4,567,017	-		HGI48_RS20425	0.29	-0.2
4,567,017	-		HGI48_RS20425	0.29	+0.3
4,567,017	-		HGI48_RS20425	0.29	-1.7
4,567,017	-		HGI48_RS20425	0.29	+0.3
4,567,017	-		HGI48_RS20425	0.29	-1.3
4,567,017	-		HGI48_RS20425	0.29	+0.1
4,567,017	-		HGI48_RS20425	0.29	-0.7
4,567,017	-		HGI48_RS20425	0.29	-2.6
4,567,017	-		HGI48_RS20425	0.29	-0.2
4,567,017	-		HGI48_RS20425	0.29	-1.0
4,567,049	+		HGI48_RS20425	0.32	-1.0
4,567,050	-		HGI48_RS20425	0.32	-0.0
4,567,050	-		HGI48_RS20425	0.32	-1.2
4,567,063	+		HGI48_RS20425	0.33	+0.9
4,567,089	+		HGI48_RS20425	0.35	-1.0
4,567,089	+		HGI48_RS20425	0.35	-1.4
4,567,089	+		HGI48_RS20425	0.35	+0.9
4,567,127	+		HGI48_RS20425	0.38	-1.0
4,567,127	+		HGI48_RS20425	0.38	-1.4
4,567,127	+		HGI48_RS20425	0.38	+0.3
4,567,127	+		HGI48_RS20425	0.38	+0.5
4,567,127	+		HGI48_RS20425	0.38	-0.7
4,567,127	+		HGI48_RS20425	0.38	-1.3
4,567,127	+		HGI48_RS20425	0.38	-1.0
4,567,127	+		HGI48_RS20425	0.38	+0.7
4,567,127	+		HGI48_RS20425	0.38	-0.8
4,567,127	+		HGI48_RS20425	0.38	-0.7
4,567,127	+		HGI48_RS20425	0.38	-0.5
4,567,128	-		HGI48_RS20425	0.38	-0.5
4,567,128	-		HGI48_RS20425	0.38	-1.7
4,567,247	+		HGI48_RS20425	0.49	+0.2
4,567,247	+		HGI48_RS20425	0.49	+0.7
4,567,264	+		HGI48_RS20425	0.50	+0.0
4,567,264	+		HGI48_RS20425	0.50	-0.7
4,567,264	+		HGI48_RS20425	0.50	+0.3
4,567,265	-		HGI48_RS20425	0.50	-0.7
4,567,265	-		HGI48_RS20425	0.50	-1.5
4,567,265	-		HGI48_RS20425	0.50	-0.0
4,567,265	-		HGI48_RS20425	0.50	-1.0
4,567,530	-		HGI48_RS20425	0.73	-1.5
4,567,541	+		HGI48_RS20425	0.74	-1.2
4,567,590	+		HGI48_RS20425	0.78	-2.0
4,567,590	+		HGI48_RS20425	0.78	-1.0
4,567,590	+				-0.3