Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20030 and HGI48_RS20035 are separated by 369 nucleotides HGI48_RS20035 and HGI48_RS20040 are separated by 86 nucleotides HGI48_RS20040 and HGI48_RS20045 overlap by 1 nucleotides
HGI48_RS20030: HGI48_RS20030 - magnesium/cobalt transporter CorA, at 4,477,364 to 4,478,314
_RS20030
HGI48_RS20035: HGI48_RS20035 - DNA helicase II, at 4,478,684 to 4,480,846
_RS20035
HGI48_RS20040: HGI48_RS20040 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,480,933 to 4,481,649
_RS20040
HGI48_RS20045: HGI48_RS20045 - tyrosine recombinase XerC, at 4,481,649 to 4,482,557
_RS20045
Position (kb) 4478
4479
4480
4481 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4477.804 kb on - strand, within HGI48_RS20030 at 4477.860 kb on + strand at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.860 kb on + strand, within HGI48_RS20030 at 4477.865 kb on - strand, within HGI48_RS20030 at 4477.865 kb on - strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.008 kb on + strand, within HGI48_RS20030 at 4478.011 kb on - strand, within HGI48_RS20030 at 4478.011 kb on - strand, within HGI48_RS20030 at 4478.076 kb on + strand, within HGI48_RS20030 at 4478.077 kb on - strand at 4478.280 kb on - strand at 4478.314 kb on + strand at 4478.437 kb on - strand at 4478.481 kb on + strand at 4478.481 kb on + strand at 4478.482 kb on - strand at 4478.482 kb on - strand at 4478.482 kb on - strand at 4478.494 kb on + strand at 4478.494 kb on + strand at 4478.494 kb on + strand at 4478.495 kb on - strand at 4478.501 kb on + strand at 4478.557 kb on - strand at 4478.615 kb on + strand at 4478.616 kb on - strand at 4478.616 kb on - strand at 4478.632 kb on + strand at 4478.632 kb on + strand at 4478.685 kb on + strand at 4478.686 kb on - strand at 4478.686 kb on - strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.687 kb on + strand at 4478.688 kb on - strand at 4478.688 kb on - strand at 4478.688 kb on - strand at 4478.707 kb on - strand at 4478.786 kb on - strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.836 kb on + strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.837 kb on - strand at 4478.838 kb on + strand at 4478.839 kb on - strand at 4478.839 kb on - strand at 4478.915 kb on + strand, within HGI48_RS20035 at 4478.916 kb on - strand at 4479.007 kb on - strand, within HGI48_RS20035 at 4479.049 kb on - strand, within HGI48_RS20035 at 4479.285 kb on + strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.367 kb on - strand, within HGI48_RS20035 at 4479.410 kb on + strand, within HGI48_RS20035 at 4479.411 kb on - strand, within HGI48_RS20035 at 4479.666 kb on + strand at 4479.667 kb on - strand, within HGI48_RS20035 at 4479.717 kb on + strand, within HGI48_RS20035 at 4479.718 kb on - strand, within HGI48_RS20035 at 4480.000 kb on - strand, within HGI48_RS20035 at 4480.000 kb on - strand at 4480.086 kb on + strand, within HGI48_RS20035 at 4480.086 kb on + strand, within HGI48_RS20035 at 4480.204 kb on + strand, within HGI48_RS20035 at 4480.317 kb on + strand at 4480.326 kb on + strand, within HGI48_RS20035 at 4480.362 kb on + strand at 4480.363 kb on - strand, within HGI48_RS20035 at 4480.413 kb on + strand, within HGI48_RS20035 at 4480.684 kb on - strand at 4480.767 kb on - strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.838 kb on + strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.839 kb on - strand at 4480.846 kb on + strand at 4480.846 kb on + strand at 4480.847 kb on - strand at 4480.912 kb on + strand at 4480.913 kb on - strand at 4480.913 kb on - strand at 4480.934 kb on + strand at 4480.934 kb on + strand at 4480.937 kb on - strand at 4480.972 kb on + strand at 4481.029 kb on - strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.044 kb on + strand, within HGI48_RS20040 at 4481.116 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.144 kb on + strand, within HGI48_RS20040 at 4481.145 kb on - strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.148 kb on + strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand at 4481.149 kb on - strand at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.149 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.194 kb on - strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.204 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.410 kb on + strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.411 kb on - strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.444 kb on + strand, within HGI48_RS20040 at 4481.445 kb on - strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.525 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand, within HGI48_RS20040 at 4481.576 kb on + strand at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.577 kb on - strand, within HGI48_RS20040 at 4481.581 kb on - strand at 4481.581 kb on - strand at 4481.620 kb on - strand at 4481.645 kb on + strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.646 kb on - strand at 4481.657 kb on + strand at 4481.657 kb on + strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.658 kb on - strand at 4481.724 kb on - strand at 4481.726 kb on - strand at 4481.839 kb on - strand, within HGI48_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,477,804 - HGI48_RS20030 0.46 +0.3 4,477,860 + +2.3 4,477,860 + HGI48_RS20030 0.52 -0.2 4,477,860 + HGI48_RS20030 0.52 +0.6 4,477,860 + HGI48_RS20030 0.52 -1.5 4,477,860 + HGI48_RS20030 0.52 +0.3 4,477,865 - HGI48_RS20030 0.53 -1.3 4,477,865 - HGI48_RS20030 0.53 +0.8 4,478,008 + HGI48_RS20030 0.68 +1.3 4,478,008 + HGI48_RS20030 0.68 -0.7 4,478,008 + HGI48_RS20030 0.68 -0.4 4,478,011 - HGI48_RS20030 0.68 -1.0 4,478,011 - HGI48_RS20030 0.68 -1.0 4,478,076 + HGI48_RS20030 0.75 -1.0 4,478,077 - +1.7 4,478,280 - -1.5 4,478,314 + +1.3 4,478,437 - +0.7 4,478,481 + -0.1 4,478,481 + -1.0 4,478,482 - -0.7 4,478,482 - -1.1 4,478,482 - -0.1 4,478,494 + +1.6 4,478,494 + +0.3 4,478,494 + -0.7 4,478,495 - -0.3 4,478,501 + -1.9 4,478,557 - -1.7 4,478,615 + +0.1 4,478,616 - -0.5 4,478,616 - -0.3 4,478,632 + +0.9 4,478,632 + -0.7 4,478,685 + -0.2 4,478,686 - -0.4 4,478,686 - -2.3 4,478,687 + -1.3 4,478,687 + -1.5 4,478,687 + -1.0 4,478,687 + -1.3 4,478,687 + -1.4 4,478,688 - +2.3 4,478,688 - -0.3 4,478,688 - +2.0 4,478,707 - -1.3 4,478,786 - -0.5 4,478,836 + -0.6 4,478,836 + -0.7 4,478,836 + -1.9 4,478,836 + +0.3 4,478,836 + +0.7 4,478,836 + -0.7 4,478,837 - -1.0 4,478,837 - -0.7 4,478,837 - -1.7 4,478,837 - +0.1 4,478,837 - +0.1 4,478,837 - -1.5 4,478,837 - -1.5 4,478,838 + -1.2 4,478,839 - +1.0 4,478,839 - -0.3 4,478,915 + HGI48_RS20035 0.11 -0.7 4,478,916 - -0.3 4,479,007 - HGI48_RS20035 0.15 -2.2 4,479,049 - HGI48_RS20035 0.17 -1.0 4,479,285 + HGI48_RS20035 0.28 -1.0 4,479,367 - HGI48_RS20035 0.32 -0.8 4,479,367 - HGI48_RS20035 0.32 -2.6 4,479,367 - HGI48_RS20035 0.32 -3.1 4,479,410 + HGI48_RS20035 0.34 -1.5 4,479,411 - HGI48_RS20035 0.34 -0.7 4,479,666 + -0.3 4,479,667 - HGI48_RS20035 0.45 -1.0 4,479,717 + HGI48_RS20035 0.48 -1.5 4,479,718 - HGI48_RS20035 0.48 +1.0 4,480,000 - HGI48_RS20035 0.61 -0.9 4,480,000 - -0.3 4,480,086 + HGI48_RS20035 0.65 -0.7 4,480,086 + HGI48_RS20035 0.65 -1.9 4,480,204 + HGI48_RS20035 0.70 -1.0 4,480,317 + +0.3 4,480,326 + HGI48_RS20035 0.76 -0.7 4,480,362 + +0.3 4,480,363 - HGI48_RS20035 0.78 +1.3 4,480,413 + HGI48_RS20035 0.80 -1.3 4,480,684 - -0.7 4,480,767 - -0.7 4,480,838 + -1.2 4,480,838 + +0.3 4,480,838 + -0.1 4,480,838 + -1.5 4,480,838 + -0.7 4,480,838 + -1.3 4,480,839 - +1.7 4,480,839 - -0.3 4,480,839 - -0.7 4,480,839 - -0.6 4,480,839 - +0.2 4,480,846 + -1.1 4,480,846 + -1.1 4,480,847 - -0.7 4,480,912 + +0.3 4,480,913 - +1.8 4,480,913 - -0.6 4,480,934 + +1.3 4,480,934 + -0.7 4,480,937 - -0.6 4,480,972 + -0.9 4,481,029 - HGI48_RS20040 0.13 +1.3 4,481,044 + HGI48_RS20040 0.15 +0.6 4,481,044 + HGI48_RS20040 0.15 -1.1 4,481,116 + HGI48_RS20040 0.26 +0.4 4,481,144 + HGI48_RS20040 0.29 +0.6 4,481,144 + HGI48_RS20040 0.29 -1.7 4,481,144 + HGI48_RS20040 0.29 -0.7 4,481,144 + HGI48_RS20040 0.29 -0.6 4,481,145 - HGI48_RS20040 0.30 +0.0 4,481,148 + HGI48_RS20040 0.30 -2.0 4,481,148 + HGI48_RS20040 0.30 -0.7 4,481,148 + HGI48_RS20040 0.30 +0.3 4,481,148 + HGI48_RS20040 0.30 +0.1 4,481,148 + +0.3 4,481,148 + HGI48_RS20040 0.30 +1.3 4,481,148 + HGI48_RS20040 0.30 -0.9 4,481,148 + HGI48_RS20040 0.30 -2.2 4,481,148 + HGI48_RS20040 0.30 +0.8 4,481,148 + HGI48_RS20040 0.30 -3.0 4,481,148 + HGI48_RS20040 0.30 +0.2 4,481,148 + HGI48_RS20040 0.30 +0.0 4,481,148 + HGI48_RS20040 0.30 -2.0 4,481,148 + HGI48_RS20040 0.30 +1.3 4,481,148 + HGI48_RS20040 0.30 -1.0 4,481,148 + HGI48_RS20040 0.30 -1.3 4,481,148 + HGI48_RS20040 0.30 -0.2 4,481,148 + HGI48_RS20040 0.30 +0.3 4,481,149 - HGI48_RS20040 0.30 -0.7 4,481,149 - HGI48_RS20040 0.30 +0.4 4,481,149 - HGI48_RS20040 0.30 -0.4 4,481,149 - +0.3 4,481,149 - HGI48_RS20040 0.30 -1.5 4,481,149 - -0.3 4,481,149 - -0.3 4,481,149 - HGI48_RS20040 0.30 -1.2 4,481,149 - HGI48_RS20040 0.30 -1.3 4,481,149 - HGI48_RS20040 0.30 -0.5 4,481,194 - HGI48_RS20040 0.36 +1.3 4,481,194 - HGI48_RS20040 0.36 +1.3 4,481,204 + HGI48_RS20040 0.38 -0.7 4,481,204 + HGI48_RS20040 0.38 +0.1 4,481,410 + HGI48_RS20040 0.67 +0.3 4,481,410 + HGI48_RS20040 0.67 +0.3 4,481,410 + HGI48_RS20040 0.67 -2.0 4,481,410 + HGI48_RS20040 0.67 -0.9 4,481,411 - HGI48_RS20040 0.67 -0.0 4,481,411 - HGI48_RS20040 0.67 -2.8 4,481,411 - HGI48_RS20040 0.67 -1.3 4,481,411 - HGI48_RS20040 0.67 +0.5 4,481,411 - HGI48_RS20040 0.67 -0.8 4,481,411 - HGI48_RS20040 0.67 -0.3 4,481,411 - HGI48_RS20040 0.67 -0.7 4,481,444 + HGI48_RS20040 0.71 +1.0 4,481,444 + HGI48_RS20040 0.71 -0.3 4,481,445 - HGI48_RS20040 0.71 -0.1 4,481,525 + HGI48_RS20040 0.83 -1.2 4,481,525 + HGI48_RS20040 0.83 -1.0 4,481,576 + HGI48_RS20040 0.90 -1.0 4,481,576 + HGI48_RS20040 0.90 -0.9 4,481,576 + +2.5 4,481,576 + HGI48_RS20040 0.90 -1.4 4,481,576 + HGI48_RS20040 0.90 -0.7 4,481,576 + +1.3 4,481,577 - HGI48_RS20040 0.90 +0.0 4,481,577 - HGI48_RS20040 0.90 -0.3 4,481,577 - HGI48_RS20040 0.90 +0.3 4,481,577 - HGI48_RS20040 0.90 -1.0 4,481,577 - HGI48_RS20040 0.90 -1.9 4,481,577 - HGI48_RS20040 0.90 -0.7 4,481,581 - -0.6 4,481,581 - +1.3 4,481,620 - -0.9 4,481,645 + -0.7 4,481,646 - -1.6 4,481,646 - +0.3 4,481,646 - -1.5 4,481,646 - -0.7 4,481,646 - -1.3 4,481,646 - +0.3 4,481,646 - -0.5 4,481,657 + -0.4 4,481,657 + -0.0 4,481,658 - -0.3 4,481,658 - +0.4 4,481,658 - +0.3 4,481,724 - +0.7 4,481,726 - -1.3 4,481,839 - HGI48_RS20045 0.21 -4.3
Or see this region's nucleotide sequence