Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,725,657	+		HGI48_RS16625	0.37	-1.0
3,725,658	-		HGI48_RS16625	0.37	-0.1
3,725,658	-		HGI48_RS16625	0.37	+0.1
3,725,658	-		HGI48_RS16625	0.37	-2.0
3,725,658	-		HGI48_RS16625	0.37	+0.8
3,725,658	-		HGI48_RS16625	0.37	-2.1
3,725,658	-		HGI48_RS16625	0.37	+0.0
3,725,746	+		HGI48_RS16625	0.45	-0.2
3,725,784	+				+2.6
3,725,805	+		HGI48_RS16625	0.49	-1.8
3,725,806	-				+1.5
3,725,806	-		HGI48_RS16625	0.49	-0.8
3,725,806	-		HGI48_RS16625	0.49	-2.4
3,725,940	+		HGI48_RS16625	0.60	-1.8
3,725,967	+		HGI48_RS16625	0.62	-1.3
3,725,968	-		HGI48_RS16625	0.62	-2.3
3,726,027	+		HGI48_RS16625	0.67	-1.3
3,726,043	-		HGI48_RS16625	0.68	+0.7
3,726,043	-		HGI48_RS16625	0.68	-0.4
3,726,122	-		HGI48_RS16625	0.75	-0.2
3,726,141	+		HGI48_RS16625	0.76	-0.5
3,726,141	+		HGI48_RS16625	0.76	-1.0
3,726,141	+		HGI48_RS16625	0.76	-0.0
3,726,141	+		HGI48_RS16625	0.76	-1.1
3,726,141	+		HGI48_RS16625	0.76	-0.6
3,726,141	+		HGI48_RS16625	0.76	-1.5
3,726,141	+				+0.5
3,726,142	-		HGI48_RS16625	0.76	-1.3
3,726,142	-		HGI48_RS16625	0.76	-1.4
3,726,142	-		HGI48_RS16625	0.76	-1.4
3,726,142	-		HGI48_RS16625	0.76	-1.5
3,726,142	-		HGI48_RS16625	0.76	-0.1
3,726,142	-		HGI48_RS16625	0.76	-0.8
3,726,142	-		HGI48_RS16625	0.76	-1.0
3,726,294	+		HGI48_RS16625	0.88	-2.3
3,726,377	-				-0.7
3,726,396	-				-1.0
3,726,469	+				+1.0
3,726,470	-				+0.0
3,726,470	-				-0.8
3,726,495	+				-1.5
3,726,508	+				+1.5
3,726,509	-				-1.8
3,726,522	+				-1.1
3,726,522	+				-1.4
3,726,522	+				-1.7
3,726,522	+				-1.2
3,726,522	+				-1.8
3,726,522	+				-1.0
3,726,523	-				+0.6
3,726,523	-				+0.0
3,726,523	-				-0.6
3,726,523	-				-0.4
3,726,523	-				-1.3
3,726,532	-				-1.3
3,726,554	-				-0.2
3,726,554	-				+0.6
3,726,554	-				-0.3
3,726,624	-				-1.3
3,726,624	-				+0.3
3,726,624	-				+0.4
3,726,681	+		HGI48_RS16630	0.19	-0.5
3,726,681	+		HGI48_RS16630	0.19	+0.7
3,726,689	+				-0.5
3,726,690	-				+0.5
3,726,728	-		HGI48_RS16630	0.29	-1.0
3,726,728	-		HGI48_RS16630	0.29	-0.2
3,726,744	+		HGI48_RS16630	0.32	-2.0
3,726,744	+		HGI48_RS16630	0.32	-1.2
3,726,744	+		HGI48_RS16630	0.32	-1.0
3,726,757	+		HGI48_RS16630	0.35	-1.3
3,726,794	+		HGI48_RS16630	0.43	-1.0
3,726,794	+		HGI48_RS16630	0.43	+0.6
3,726,795	-		HGI48_RS16630	0.43	-1.8
3,726,804	+		HGI48_RS16630	0.45	-1.0
3,726,804	+		HGI48_RS16630	0.45	-2.0
3,726,804	+		HGI48_RS16630	0.45	-1.8
3,726,805	-		HGI48_RS16630	0.46	-1.3
3,726,805	-		HGI48_RS16630	0.46	-1.1
3,726,805	-		HGI48_RS16630	0.46	+1.0
3,726,867	+		HGI48_RS16630	0.59	-1.8
3,726,867	+		HGI48_RS16630	0.59	-1.0
3,726,877	+		HGI48_RS16630	0.61	-1.2
3,726,877	+		HGI48_RS16630	0.61	+0.3
3,726,877	+		HGI48_RS16630	0.61	-2.1
3,726,877	+		HGI48_RS16630	0.61	-1.0
3,726,877	+		HGI48_RS16630	0.61	-1.7
3,726,877	+		HGI48_RS16630	0.61	-0.3
3,726,877	+		HGI48_RS16630	0.61	+0.0
3,726,877	+		HGI48_RS16630	0.61	-0.3
3,726,877	+				+0.0
3,726,877	+		HGI48_RS16630	0.61	-1.1
3,726,877	+		HGI48_RS16630	0.61	-1.8
3,726,878	-		HGI48_RS16630	0.61	-1.0
3,726,878	-				-0.5
3,726,878	-		HGI48_RS16630	0.61	-0.5
3,726,881	+		HGI48_RS16630	0.62	-1.0
3,726,881	+		HGI48_RS16630	0.62	+0.2
3,726,881	+		HGI48_RS16630	0.62	+0.3
3,726,881	+		HGI48_RS16630	0.62	-1.5
3,726,881	+		HGI48_RS16630	0.62	+0.0
3,726,881	+		HGI48_RS16630	0.62	-2.1
3,726,881	+		HGI48_RS16630	0.62	+0.0
3,726,882	-		HGI48_RS16630	0.62	-1.7
3,726,882	-				+0.0
3,726,882	-		HGI48_RS16630	0.62	-1.8
3,726,882	-		HGI48_RS16630	0.62	-0.1
3,726,882	-		HGI48_RS16630	0.62	-1.4
3,726,882	-				-0.5
3,726,882	-		HGI48_RS16630	0.62	+1.5
3,726,882	-		HGI48_RS16630	0.62	+0.6
3,726,882	-		HGI48_RS16630	0.62	-0.6
3,726,882	-		HGI48_RS16630	0.62	+1.3
3,726,882	-		HGI48_RS16630	0.62	-1.8
3,726,882	-		HGI48_RS16630	0.62	-1.3
3,726,886	+		HGI48_RS16630	0.63	-2.3
3,726,886	+		HGI48_RS16630	0.63	-0.5
3,726,887	-		HGI48_RS16630	0.63	-0.3
3,726,890	+		HGI48_RS16630	0.64	-0.8
3,726,890	+		HGI48_RS16630	0.64	-1.0
3,726,890	+		HGI48_RS16630	0.64	-1.7
3,726,890	+		HGI48_RS16630	0.64	-1.4
3,726,890	+		HGI48_RS16630	0.64	+0.2
3,726,891	-		HGI48_RS16630	0.64	-1.5
3,726,891	-		HGI48_RS16630	0.64	-1.6
3,726,891	-		HGI48_RS16630	0.64	-0.3
3,726,891	-		HGI48_RS16630	0.64	-1.3
3,726,891	-		HGI48_RS16630	0.64	-1.3
3,727,024	+				+0.4
3,727,024	+				-1.0
3,727,024	+				-0.2
3,727,041	+				-1.3
3,727,042	-				-0.7
3,727,042	-				+0.0
3,727,054	+				+0.3
3,727,055	-				+0.0
3,727,061	+				-0.3
3,727,062	-				+0.0
3,727,062	-				+0.0
3,727,088	-				-0.4
3,727,110	+				+0.0
3,727,110	+				-2.1
3,727,111	-				-0.4
3,727,111	-				-1.6
3,727,126	+				+0.6
3,727,128	+				+1.0
3,727,128	+				-1.3
3,727,128	+				-0.7
3,727,128	+				+0.0
3,727,128	+				+0.0
3,727,129	-				+1.3
3,727,129	-				+2.8
3,727,129	-				-2.1
3,727,129	-				-1.0
3,727,129	-				-0.5
3,727,129	-				+0.6
3,727,129	-				-1.0
3,727,129	-				-1.3
3,727,132	+				-1.3
3,727,132	+				+0.3
3,727,154	+				+0.3
3,727,158	+				-2.7
3,727,158	+				-1.3
3,727,159	-				-2.4
3,727,190	-				-0.3
3,727,193	+				+1.5
3,727,197	+				-2.3
3,727,213	-				-1.4
3,727,222	-				+0.0
3,727,240	+				-1.5
3,727,241	-				-0.9
3,727,242	+				-0.1
3,727,242	+				-0.3
3,727,242	+				+0.0
3,727,243	-				-0.2
3,727,243	-				-0.4
3,727,243	-				+1.0
3,727,263	+				-0.5
3,727,360	+		HGI48_RS16635	0.25	-0.1
3,727,399	+		HGI48_RS16635	0.39	+0.0
3,727,400	-		HGI48_RS16635	0.39	-0.4
3,727,400	-		HGI48_RS16635	0.39	+1.0
3,727,451	-		HGI48_RS16635	0.57	-1.3
3,727,451	-				-0.5
3,727,453	-		HGI48_RS16635	0.58	-1.1
3,727,453	-		HGI48_RS16635	0.58	+0.8
3,727,481	-		HGI48_RS16635	0.67	-2.0
3,727,486	+		HGI48_RS16635	0.69	-0.3
3,727,486	+		HGI48_RS16635	0.69	+0.8
3,727,486	+		HGI48_RS16635	0.69	-0.5
3,727,486	+		HGI48_RS16635	0.69	-0.1
3,727,486	+				-0.5
3,727,487	-		HGI48_RS16635	0.69	-1.5
3,727,530	+				+0.0
3,727,530	+		HGI48_RS16635	0.84	-0.5
3,727,531	-		HGI48_RS16635	0.85	-0.5
3,727,531	-				+1.5
3,727,615	+				-1.0
3,727,616	-				-0.7
3,727,616	-				-0.8
3,727,616	-				-1.3
3,727,628	+				-0.8
3,727,628	+				+1.0
3,727,629	-				+1.0
3,727,632	+				+0.7
3,727,632	+				+0.7
3,727,632	+				-1.5
3,727,632	+				-1.0
3,727,633	-				-0.6
3,727,633	-				-0.5
3,727,633	-				-0.1
3,727,633	-				+0.0
3,727,696	+				-0.8
3,727,696	+				-1.2
3,727,696	+				+0.6
3,727,696	+				-2.1
3,727,712	+				-1.3
3,727,713	-				-0.8
3,727,736	+				-0.4
3,727,736	+				-1.5
3,727,736	+				-0.7
3,727,737	-				+0.0
3,727,771	+				+0.7
3,727,771	+				+0.7
3,727,772	-				-1.0
3,727,772	-				-1.8
3,727,896	+				+0.5
3,727,897	-		HGI48_RS16640	0.18	-0.3
3,727,897	-		HGI48_RS16640	0.18	-0.4
3,727,928	+		HGI48_RS16640	0.20	-1.0
3,727,928	+		HGI48_RS16640	0.20	-0.5
3,727,928	+		HGI48_RS16640	0.20	-1.1
3,727,928	+		HGI48_RS16640	0.20	-0.2
3,727,929	-		HGI48_RS16640	0.20	+0.5
3,727,929	-		HGI48_RS16640	0.20	-0.8
3,727,929	-		HGI48_RS16640	0.20	-0.4
3,727,929	-		HGI48_RS16640	0.20	+0.2
3,727,929	-		HGI48_RS16640	0.20	+0.0
3,727,929	-		HGI48_RS16640	0.20	-0.8
3,727,929	-		HGI48_RS16640	0.20	-0.5
3,727,929	-		HGI48_RS16640	0.20	-0.3