Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16490

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,695,748	-		HGI48_RS16485	0.40	-1.6
3,695,748	-		HGI48_RS16485	0.40	-2.0
3,695,779	+		HGI48_RS16485	0.42	-0.7
3,695,779	+		HGI48_RS16485	0.42	-0.1
3,695,780	-				+1.0
3,695,780	-		HGI48_RS16485	0.42	-1.6
3,695,780	-		HGI48_RS16485	0.42	+0.2
3,695,786	+		HGI48_RS16485	0.42	+0.3
3,695,789	+		HGI48_RS16485	0.43	-1.6
3,695,789	+		HGI48_RS16485	0.43	+0.0
3,695,789	+				-0.6
3,695,789	+		HGI48_RS16485	0.43	-0.6
3,695,789	+		HGI48_RS16485	0.43	+0.3
3,695,790	-		HGI48_RS16485	0.43	+1.2
3,695,790	-		HGI48_RS16485	0.43	+1.0
3,695,790	-		HGI48_RS16485	0.43	+0.5
3,695,790	-		HGI48_RS16485	0.43	+1.2
3,695,792	+		HGI48_RS16485	0.43	-1.0
3,695,792	+		HGI48_RS16485	0.43	-0.4
3,695,792	+		HGI48_RS16485	0.43	-2.0
3,695,792	+		HGI48_RS16485	0.43	-3.0
3,695,792	+		HGI48_RS16485	0.43	-2.1
3,695,792	+				+0.4
3,695,792	+		HGI48_RS16485	0.43	-1.3
3,695,792	+		HGI48_RS16485	0.43	-0.7
3,695,793	-		HGI48_RS16485	0.43	-0.7
3,695,793	-		HGI48_RS16485	0.43	-0.4
3,695,810	+				-0.6
3,695,811	-		HGI48_RS16485	0.44	-1.1
3,695,981	-		HGI48_RS16485	0.55	-0.6
3,696,018	+		HGI48_RS16485	0.57	-0.8
3,696,142	+		HGI48_RS16485	0.65	+0.6
3,696,143	-		HGI48_RS16485	0.65	+0.7
3,696,143	-		HGI48_RS16485	0.65	-0.2
3,696,143	-		HGI48_RS16485	0.65	-1.8
3,696,143	-		HGI48_RS16485	0.65	-0.3
3,696,305	-		HGI48_RS16485	0.75	-0.4
3,696,331	+		HGI48_RS16485	0.76	-1.3
3,696,331	+		HGI48_RS16485	0.76	-1.1
3,696,331	+		HGI48_RS16485	0.76	-2.1
3,696,331	+		HGI48_RS16485	0.76	-0.6
3,696,331	+		HGI48_RS16485	0.76	-1.6
3,696,331	+		HGI48_RS16485	0.76	+0.2
3,696,332	-		HGI48_RS16485	0.77	-2.8
3,696,332	-				+0.0
3,696,332	-		HGI48_RS16485	0.77	+0.2
3,696,332	-		HGI48_RS16485	0.77	-1.0
3,696,335	+		HGI48_RS16485	0.77	-1.0
3,696,335	+				+1.0
3,696,335	+		HGI48_RS16485	0.77	+0.4
3,696,336	-		HGI48_RS16485	0.77	+0.2
3,696,336	-		HGI48_RS16485	0.77	-0.8
3,696,336	-		HGI48_RS16485	0.77	-0.2
3,696,336	-		HGI48_RS16485	0.77	+0.3
3,696,336	-		HGI48_RS16485	0.77	-0.4
3,696,336	-		HGI48_RS16485	0.77	-0.2
3,696,361	+		HGI48_RS16485	0.78	-0.3
3,696,362	-		HGI48_RS16485	0.78	+1.5
3,696,369	-		HGI48_RS16485	0.79	-0.1
3,696,380	+		HGI48_RS16485	0.80	+1.0
3,696,380	+		HGI48_RS16485	0.80	+0.0
3,696,380	+		HGI48_RS16485	0.80	+0.6
3,696,381	-		HGI48_RS16485	0.80	-0.3
3,696,381	-		HGI48_RS16485	0.80	+0.0
3,696,381	-		HGI48_RS16485	0.80	-1.0
3,696,381	-		HGI48_RS16485	0.80	+1.0
3,696,385	+		HGI48_RS16485	0.80	-0.5
3,696,385	+		HGI48_RS16485	0.80	+0.2
3,696,385	+				-0.6
3,696,386	-		HGI48_RS16485	0.80	+0.6
3,696,386	-		HGI48_RS16485	0.80	+0.0
3,696,386	-		HGI48_RS16485	0.80	+0.3
3,696,423	-		HGI48_RS16485	0.82	-0.6
3,696,423	-		HGI48_RS16485	0.82	-0.8
3,696,423	-		HGI48_RS16485	0.82	+0.8
3,696,530	+		HGI48_RS16485	0.89	-0.4
3,696,530	+				+2.0
3,696,531	-		HGI48_RS16485	0.89	-1.0
3,696,531	-		HGI48_RS16485	0.89	-0.6
3,696,628	+				-1.0
3,696,628	+				-0.8
3,696,628	+				-1.3
3,696,629	-				-1.6
3,696,629	-				+0.0
3,696,709	+				+0.1
3,696,709	+				+0.1
3,696,709	+				-1.4
3,696,733	+				-0.4
3,696,733	+				-0.4
3,696,733	+				-0.8
3,696,734	-				+0.2
3,696,734	-				+1.0
3,696,763	+				-1.1
3,696,763	+				+0.0
3,696,763	+				-1.0
3,696,763	+				+0.8
3,696,763	+				-1.0
3,696,764	-				-0.9
3,696,764	-				-1.1
3,696,764	-				+0.5
3,696,764	-				+0.2
3,696,764	-				+0.8
3,696,764	-				+1.0
3,696,764	-				-0.6
3,696,764	-				+0.0
3,696,764	-				+0.0
3,696,764	-				-2.1
3,696,785	+				+0.8
3,696,792	-				-0.4
3,696,792	-				-0.7
3,696,801	+				-1.0
3,696,917	-		HGI48_RS16490	0.21	+0.1
3,696,917	-		HGI48_RS16490	0.21	-2.6
3,697,133	-		HGI48_RS16490	0.43	+0.0
3,697,133	-		HGI48_RS16490	0.43	-2.0
3,697,133	-		HGI48_RS16490	0.43	+0.3
3,697,140	+		HGI48_RS16490	0.44	-1.2
3,697,140	+		HGI48_RS16490	0.44	-0.6
3,697,205	+		HGI48_RS16490	0.51	-1.6
3,697,233	+				-0.6
3,697,317	+		HGI48_RS16490	0.63	-0.8
3,697,317	+		HGI48_RS16490	0.63	+0.0
3,697,317	+		HGI48_RS16490	0.63	-2.0
3,697,318	-		HGI48_RS16490	0.63	-1.4
3,697,318	-		HGI48_RS16490	0.63	-0.7
3,697,318	-				-0.6
3,697,318	-				-0.6
3,697,318	-		HGI48_RS16490	0.63	-0.6
3,697,318	-		HGI48_RS16490	0.63	-1.0
3,697,357	+		HGI48_RS16490	0.67	-1.0
3,697,357	+		HGI48_RS16490	0.67	-1.0
3,697,357	+		HGI48_RS16490	0.67	-0.6
3,697,357	+		HGI48_RS16490	0.67	-0.8
3,697,357	+		HGI48_RS16490	0.67	-1.4
3,697,358	-		HGI48_RS16490	0.67	-0.6
3,697,358	-		HGI48_RS16490	0.67	-3.4
3,697,358	-		HGI48_RS16490	0.67	+0.2
3,697,358	-		HGI48_RS16490	0.67	-1.8
3,697,358	-		HGI48_RS16490	0.67	-1.1
3,697,358	-		HGI48_RS16490	0.67	-1.1
3,697,360	-		HGI48_RS16490	0.67	-1.0
3,697,446	+		HGI48_RS16490	0.76	+0.0
3,697,469	-		HGI48_RS16490	0.79	+0.0
3,697,600	+				-0.5
3,697,600	+				-1.6
3,697,600	+				-0.2
3,697,600	+				-1.6
3,697,601	-				-2.0
3,697,633	+				+0.0
3,697,634	-				-0.1
3,697,634	-				-1.8
3,697,660	+				-0.4
3,697,661	-				-1.9
3,697,671	+				+0.3
3,697,672	-				+0.7
3,697,725	+				-0.7
3,697,783	+		HGI48_RS16495	0.15	-0.3
3,697,784	-		HGI48_RS16495	0.15	-1.1
3,697,804	+				+0.4
3,697,804	+				+1.0
3,697,804	+		HGI48_RS16495	0.17	-0.3
3,697,804	+		HGI48_RS16495	0.17	-1.0
3,697,805	-				+1.4
3,697,805	-		HGI48_RS16495	0.17	-1.3
3,697,892	-		HGI48_RS16495	0.28	+0.0
3,697,898	+		HGI48_RS16495	0.29	-1.6
3,697,899	-		HGI48_RS16495	0.29	-0.4
3,697,905	+		HGI48_RS16495	0.29	+0.9
3,697,961	+				+1.0
3,697,962	-		HGI48_RS16495	0.36	+1.0
3,697,962	-		HGI48_RS16495	0.36	+0.5
3,698,000	-				+0.4
3,698,011	+		HGI48_RS16495	0.42	-1.6
3,698,059	-		HGI48_RS16495	0.48	-0.7
3,698,068	+		HGI48_RS16495	0.49	+1.0
3,698,118	+		HGI48_RS16495	0.55	-0.2
3,698,118	+				+2.0
3,698,118	+		HGI48_RS16495	0.55	-1.3
3,698,119	-		HGI48_RS16495	0.55	-0.6
3,698,119	-				-0.6
3,698,119	-		HGI48_RS16495	0.55	-0.5
3,698,119	-		HGI48_RS16495	0.55	+0.0
3,698,162	+				-0.6
3,698,162	+		HGI48_RS16495	0.61	-0.2
3,698,162	+		HGI48_RS16495	0.61	-0.6
3,698,162	+		HGI48_RS16495	0.61	-2.0
3,698,163	-		HGI48_RS16495	0.61	+0.2
3,698,163	-		HGI48_RS16495	0.61	-0.3
3,698,163	-		HGI48_RS16495	0.61	-1.6
3,698,163	-		HGI48_RS16495	0.61	-1.0
3,698,163	-		HGI48_RS16495	0.61	-1.3
3,698,163	-		HGI48_RS16495	0.61	-2.1
3,698,163	-		HGI48_RS16495	0.61	-1.0
3,698,201	+		HGI48_RS16495	0.65	-2.3
3,698,201	+		HGI48_RS16495	0.65	+0.0
3,698,201	+		HGI48_RS16495	0.65	-0.6
3,698,202	-		HGI48_RS16495	0.65	-0.7
3,698,202	-		HGI48_RS16495	0.65	+1.3
3,698,204	-		HGI48_RS16495	0.66	+0.7
3,698,204	-				+0.4
3,698,204	-				+1.0
3,698,204	-		HGI48_RS16495	0.66	-0.6
3,698,228	-		HGI48_RS16495	0.68	+1.3
3,698,281	+		HGI48_RS16495	0.75	-2.0
3,698,281	+		HGI48_RS16495	0.75	+0.0
3,698,282	-		HGI48_RS16495	0.75	+0.0
3,698,369	+		HGI48_RS16495	0.86	+0.2
3,698,369	+		HGI48_RS16495	0.86	-1.3
3,698,369	+		HGI48_RS16495	0.86	-0.1
3,698,370	-		HGI48_RS16495	0.86	-1.6
3,698,370	-		HGI48_RS16495	0.86	-1.0
3,698,378	-		HGI48_RS16495	0.87	-1.8
3,698,549	-				-2.0
3,698,560	+				-0.1
3,698,560	+				+1.2
3,698,604	+				-1.0
3,698,605	-				-1.5
3,698,605	-				-0.6
3,698,610	-				-1.3
3,698,610	-				-0.5
3,698,633	+				-1.3