Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14910

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,359,860	+		HGI48_RS14905	0.44	-0.5
3,359,862	+		HGI48_RS14905	0.44	-0.8
3,359,862	+		HGI48_RS14905	0.44	-0.8
3,359,862	+		HGI48_RS14905	0.44	+0.2
3,359,862	+		HGI48_RS14905	0.44	-0.1
3,359,862	+		HGI48_RS14905	0.44	-0.7
3,359,862	+		HGI48_RS14905	0.44	-1.8
3,359,862	+		HGI48_RS14905	0.44	+0.2
3,359,863	-		HGI48_RS14905	0.44	-0.8
3,359,863	-		HGI48_RS14905	0.44	+0.6
3,359,863	-		HGI48_RS14905	0.44	+1.9
3,359,863	-		HGI48_RS14905	0.44	-0.4
3,359,863	-		HGI48_RS14905	0.44	+0.8
3,359,866	+		HGI48_RS14905	0.45	-2.0
3,359,866	+		HGI48_RS14905	0.45	-1.0
3,359,867	-				-0.6
3,359,931	+		HGI48_RS14905	0.50	+0.3
3,359,958	+		HGI48_RS14905	0.52	-0.3
3,359,959	-				+1.7
3,359,965	+		HGI48_RS14905	0.53	-0.0
3,359,965	+				-0.6
3,359,965	+		HGI48_RS14905	0.53	+1.6
3,359,966	-		HGI48_RS14905	0.53	-0.8
3,359,967	+		HGI48_RS14905	0.53	-0.5
3,359,968	-		HGI48_RS14905	0.53	-0.1
3,359,980	+		HGI48_RS14905	0.54	+2.0
3,359,980	+				-0.0
3,360,062	-		HGI48_RS14905	0.61	+1.4
3,360,076	+		HGI48_RS14905	0.62	-1.2
3,360,077	-		HGI48_RS14905	0.62	-1.4
3,360,112	-		HGI48_RS14905	0.65	-0.9
3,360,112	-		HGI48_RS14905	0.65	-1.4
3,360,112	-		HGI48_RS14905	0.65	-0.0
3,360,112	-		HGI48_RS14905	0.65	-1.4
3,360,112	-		HGI48_RS14905	0.65	-0.0
3,360,112	-		HGI48_RS14905	0.65	-1.2
3,360,112	-		HGI48_RS14905	0.65	+0.5
3,360,113	+				+2.0
3,360,113	+		HGI48_RS14905	0.65	-0.3
3,360,113	+		HGI48_RS14905	0.65	-0.2
3,360,113	+		HGI48_RS14905	0.65	+1.2
3,360,113	+		HGI48_RS14905	0.65	-1.1
3,360,113	+		HGI48_RS14905	0.65	-0.0
3,360,114	-		HGI48_RS14905	0.65	-0.8
3,360,114	-		HGI48_RS14905	0.65	-0.3
3,360,114	-		HGI48_RS14905	0.65	-0.8
3,360,114	-		HGI48_RS14905	0.65	+0.1
3,360,122	+		HGI48_RS14905	0.66	-1.0
3,360,123	-		HGI48_RS14905	0.66	+0.3
3,360,165	-		HGI48_RS14905	0.70	-1.2
3,360,184	+		HGI48_RS14905	0.71	-1.4
3,360,185	-		HGI48_RS14905	0.71	+0.4
3,360,217	+		HGI48_RS14905	0.74	-1.8
3,360,217	+		HGI48_RS14905	0.74	-1.0
3,360,218	-		HGI48_RS14905	0.74	-0.6
3,360,222	+		HGI48_RS14905	0.75	+0.6
3,360,222	+		HGI48_RS14905	0.75	-0.7
3,360,222	+		HGI48_RS14905	0.75	-0.8
3,360,222	+		HGI48_RS14905	0.75	+0.6
3,360,223	-		HGI48_RS14905	0.75	+1.0
3,360,223	-		HGI48_RS14905	0.75	-0.6
3,360,261	+		HGI48_RS14905	0.78	+1.0
3,360,262	-		HGI48_RS14905	0.78	+0.6
3,360,265	+		HGI48_RS14905	0.78	-1.4
3,360,265	+		HGI48_RS14905	0.78	+0.4
3,360,282	+		HGI48_RS14905	0.80	-0.4
3,360,282	+		HGI48_RS14905	0.80	+0.2
3,360,282	+		HGI48_RS14905	0.80	+1.0
3,360,282	+		HGI48_RS14905	0.80	-0.0
3,360,282	+		HGI48_RS14905	0.80	-1.6
3,360,282	+		HGI48_RS14905	0.80	-1.6
3,360,283	-		HGI48_RS14905	0.80	-0.0
3,360,283	-		HGI48_RS14905	0.80	+0.2
3,360,283	-		HGI48_RS14905	0.80	-0.7
3,360,283	-		HGI48_RS14905	0.80	+0.3
3,360,283	-		HGI48_RS14905	0.80	-0.4
3,360,283	-		HGI48_RS14905	0.80	-0.5
3,360,283	-		HGI48_RS14905	0.80	-2.2
3,360,325	-		HGI48_RS14905	0.83	+0.2
3,360,381	+		HGI48_RS14905	0.88	+0.1
3,360,381	+		HGI48_RS14905	0.88	-1.5
3,360,381	+		HGI48_RS14905	0.88	+3.2
3,360,382	-		HGI48_RS14905	0.88	+0.6
3,360,382	-		HGI48_RS14905	0.88	-1.6
3,360,382	-		HGI48_RS14905	0.88	-1.0
3,360,382	-		HGI48_RS14905	0.88	-0.6
3,360,382	-		HGI48_RS14905	0.88	-0.9
3,360,382	-		HGI48_RS14905	0.88	-1.6
3,360,385	+		HGI48_RS14905	0.88	-0.4
3,360,386	-		HGI48_RS14905	0.88	-1.5
3,360,386	-		HGI48_RS14905	0.88	-0.6
3,360,441	+				-0.0
3,360,470	+				-1.8
3,360,471	-				+0.6
3,360,600	-				-0.6
3,360,623	+				+1.3
3,360,624	-				+0.7
3,360,624	-				+0.8
3,360,659	+				-0.4
3,360,660	-				-0.6
3,360,803	+				-1.6
3,360,846	+				-0.0
3,360,847	-				-0.0
3,360,847	-				-0.0
3,360,855	-				-0.1
3,360,858	+				-1.0
3,360,858	+				-0.8
3,360,858	+				-0.6
3,360,858	+				-1.8
3,360,859	-				-0.4
3,360,907	+		HGI48_RS14910	0.15	-1.2
3,360,925	+		HGI48_RS14910	0.17	-2.0
3,360,925	+				+2.2
3,360,925	+		HGI48_RS14910	0.17	-0.2
3,360,926	-		HGI48_RS14910	0.17	-1.0
3,360,926	-		HGI48_RS14910	0.17	-1.7
3,360,950	-		HGI48_RS14910	0.21	-1.6
3,360,950	-		HGI48_RS14910	0.21	-1.4
3,361,004	+		HGI48_RS14910	0.29	-2.6
3,361,058	-		HGI48_RS14910	0.37	-1.6
3,361,058	-		HGI48_RS14910	0.37	-0.0
3,361,060	+		HGI48_RS14910	0.37	-0.0
3,361,060	+				-0.6
3,361,060	+				-0.6
3,361,060	+		HGI48_RS14910	0.37	-1.0
3,361,060	+				+1.0
3,361,060	+		HGI48_RS14910	0.37	-1.4
3,361,060	+		HGI48_RS14910	0.37	-1.2
3,361,061	-		HGI48_RS14910	0.37	-1.8
3,361,061	-		HGI48_RS14910	0.37	-1.4
3,361,061	-		HGI48_RS14910	0.37	-0.6
3,361,061	-		HGI48_RS14910	0.37	-0.5
3,361,197	-				+1.7
3,361,202	+		HGI48_RS14910	0.58	-1.0
3,361,357	+		HGI48_RS14910	0.81	-0.3
3,361,357	+		HGI48_RS14910	0.81	+0.1
3,361,357	+		HGI48_RS14910	0.81	-2.5
3,361,358	-		HGI48_RS14910	0.81	+1.2
3,361,412	+		HGI48_RS14910	0.89	-0.0
3,361,412	+		HGI48_RS14910	0.89	-1.0
3,361,455	+				-0.9
3,361,456	-				-0.0
3,361,483	+				-0.6
3,361,483	+				-0.0
3,361,483	+				-0.8
3,361,483	+				-0.8
3,361,483	+				+0.3
3,361,483	+				-0.5
3,361,483	+				+0.1
3,361,483	+				+1.0
3,361,484	-				+0.5
3,361,484	-				-1.4
3,361,487	+				+0.4
3,361,487	+				-1.8
3,361,487	+				+1.2
3,361,487	+				-0.2
3,361,487	+				-1.2
3,361,487	+				-0.0
3,361,487	+				+0.6
3,361,488	-				+1.0
3,361,488	-				-1.6
3,361,488	-				-0.6
3,361,599	+				-0.3
3,361,606	-				-0.9
3,361,663	+		HGI48_RS14915	0.27	+0.4
3,361,663	+		HGI48_RS14915	0.27	-2.0
3,361,729	-				+0.4
3,361,804	+				-2.9
3,361,804	+				-0.5
3,361,805	-				+1.7
3,361,805	-				-0.6
3,361,868	+				-0.0
3,361,895	-				-1.0
3,361,911	+				-2.2
3,362,016	+		HGI48_RS14920	0.18	-0.3
3,362,016	+		HGI48_RS14920	0.18	+0.3
3,362,016	+		HGI48_RS14920	0.18	+0.2
3,362,017	-				-0.6
3,362,044	+				-0.6
3,362,048	+		HGI48_RS14920	0.23	-1.4
3,362,049	-				+1.0
3,362,051	-				+0.4
3,362,370	+		HGI48_RS14920	0.78	-0.8
3,362,485	+				-0.0