Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13980

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,124,716	+		HGI48_RS13975	0.14	-2.5
3,124,716	+		HGI48_RS13975	0.14	-1.0
3,124,716	+				+0.8
3,124,717	-		HGI48_RS13975	0.14	-1.5
3,124,717	-		HGI48_RS13975	0.14	-1.1
3,124,717	-		HGI48_RS13975	0.14	-1.5
3,124,717	-		HGI48_RS13975	0.14	-0.2
3,124,717	-		HGI48_RS13975	0.14	+1.9
3,124,748	+		HGI48_RS13975	0.16	-1.4
3,124,749	-		HGI48_RS13975	0.16	-1.5
3,124,752	+		HGI48_RS13975	0.17	-2.2
3,124,752	+		HGI48_RS13975	0.17	-1.8
3,124,769	-				-0.8
3,124,769	-		HGI48_RS13975	0.18	-0.6
3,124,918	-		HGI48_RS13975	0.31	-1.5
3,124,918	-		HGI48_RS13975	0.31	+0.5
3,124,974	-		HGI48_RS13975	0.36	-1.2
3,125,171	+		HGI48_RS13975	0.53	+0.2
3,125,172	-		HGI48_RS13975	0.53	-1.0
3,125,385	-		HGI48_RS13975	0.72	+0.9
3,125,385	-		HGI48_RS13975	0.72	-2.2
3,125,385	-		HGI48_RS13975	0.72	-0.8
3,125,387	-		HGI48_RS13975	0.72	-2.2
3,125,387	-		HGI48_RS13975	0.72	-1.7
3,125,387	-		HGI48_RS13975	0.72	-1.5
3,125,387	-		HGI48_RS13975	0.72	-0.8
3,125,615	-				-2.4
3,125,615	-				-0.5
3,125,620	-				-1.8
3,125,637	+				+0.1
3,125,638	-				-0.8
3,125,638	-				-0.2
3,125,646	-				-0.1
3,125,646	-				+0.8
3,125,753	-				-1.8
3,125,753	-				+1.2
3,125,786	+				-0.3
3,125,787	-				+3.9
3,125,821	-				-1.2
3,125,828	+				+0.2
3,125,829	-				+1.2
3,125,829	-				-2.0
3,125,833	+				-1.5
3,125,834	-				+0.7
3,125,834	-				-3.5
3,125,901	+				+0.5
3,125,901	+				+1.8
3,125,901	+				-0.6
3,125,901	+				+1.1
3,125,902	-				-0.4
3,125,902	-				-0.2
3,126,072	-		HGI48_RS13980	0.12	-1.8
3,126,212	-		HGI48_RS13980	0.17	-0.8
3,126,234	-		HGI48_RS13980	0.18	-0.7
3,126,246	-				+0.8
3,126,269	+		HGI48_RS13980	0.19	-1.1
3,126,270	-		HGI48_RS13980	0.19	-0.5
3,126,270	-		HGI48_RS13980	0.19	-0.5
3,126,310	+				+0.2
3,126,310	+		HGI48_RS13980	0.20	-0.5
3,126,310	+		HGI48_RS13980	0.20	+1.5
3,126,310	+		HGI48_RS13980	0.20	-0.3
3,126,310	+		HGI48_RS13980	0.20	-0.6
3,126,311	-		HGI48_RS13980	0.20	-0.8
3,126,311	-		HGI48_RS13980	0.20	-0.1
3,126,315	-		HGI48_RS13980	0.21	-1.4
3,126,403	+		HGI48_RS13980	0.24	+0.4
3,126,403	+		HGI48_RS13980	0.24	-0.9
3,126,432	-		HGI48_RS13980	0.25	-2.2
3,126,459	+		HGI48_RS13980	0.25	-0.3
3,126,459	+		HGI48_RS13980	0.25	-0.6
3,126,478	+		HGI48_RS13980	0.26	+0.8
3,126,478	+		HGI48_RS13980	0.26	+0.2
3,126,548	+		HGI48_RS13980	0.28	+0.4
3,126,719	+		HGI48_RS13980	0.34	+0.1
3,126,752	+		HGI48_RS13980	0.35	+0.5
3,126,752	+		HGI48_RS13980	0.35	-1.8
3,126,815	-		HGI48_RS13980	0.37	-1.1
3,126,819	-				+0.2
3,126,859	+		HGI48_RS13980	0.39	+0.2
3,126,859	+		HGI48_RS13980	0.39	+0.5
3,126,860	-		HGI48_RS13980	0.39	-1.5
3,126,860	-		HGI48_RS13980	0.39	-0.2
3,126,860	-		HGI48_RS13980	0.39	-2.7
3,126,860	-		HGI48_RS13980	0.39	-2.0
3,126,891	-				+2.1
3,126,962	-		HGI48_RS13980	0.42	+0.9
3,127,004	+		HGI48_RS13980	0.44	-2.2
3,127,034	+		HGI48_RS13980	0.45	-0.2
3,127,073	+		HGI48_RS13980	0.46	+0.1
3,127,073	+		HGI48_RS13980	0.46	+1.4
3,127,074	-		HGI48_RS13980	0.46	-0.1
3,127,074	-				+1.5
3,127,124	+		HGI48_RS13980	0.48	-1.2
3,127,145	+		HGI48_RS13980	0.49	-0.5
3,127,209	+		HGI48_RS13980	0.51	+0.0
3,127,351	+		HGI48_RS13980	0.55	-0.3
3,127,357	+		HGI48_RS13980	0.56	-0.2
3,127,358	-		HGI48_RS13980	0.56	-1.2
3,127,375	+		HGI48_RS13980	0.56	+0.6
3,127,375	+		HGI48_RS13980	0.56	-1.2
3,127,376	-		HGI48_RS13980	0.56	-0.6
3,127,396	+		HGI48_RS13980	0.57	-1.3
3,127,396	+		HGI48_RS13980	0.57	-1.2
3,127,397	-		HGI48_RS13980	0.57	-1.0
3,127,397	-				-0.8
3,127,397	-		HGI48_RS13980	0.57	-0.1
3,127,397	-		HGI48_RS13980	0.57	-0.6
3,127,403	+		HGI48_RS13980	0.57	-1.0
3,127,407	-		HGI48_RS13980	0.57	+0.3
3,127,410	+		HGI48_RS13980	0.57	-0.3
3,127,410	+		HGI48_RS13980	0.57	-1.2
3,127,411	-		HGI48_RS13980	0.58	-0.2
3,127,411	-		HGI48_RS13980	0.58	-0.2
3,127,411	-		HGI48_RS13980	0.58	-0.4
3,127,411	-		HGI48_RS13980	0.58	+0.3
3,127,411	-		HGI48_RS13980	0.58	+0.4
3,127,411	-				+0.8
3,127,411	-		HGI48_RS13980	0.58	-0.4
3,127,419	-		HGI48_RS13980	0.58	-1.2
3,127,551	+		HGI48_RS13980	0.62	+0.4
3,127,551	+		HGI48_RS13980	0.62	-1.2
3,127,551	+		HGI48_RS13980	0.62	-0.8
3,127,551	+				-0.8
3,127,551	+		HGI48_RS13980	0.62	-0.1
3,127,551	+		HGI48_RS13980	0.62	-0.7
3,127,552	-		HGI48_RS13980	0.62	+1.5
3,127,552	-		HGI48_RS13980	0.62	-0.5
3,127,552	-		HGI48_RS13980	0.62	-1.5
3,127,552	-		HGI48_RS13980	0.62	+0.9
3,127,552	-				-0.8
3,127,552	-		HGI48_RS13980	0.62	-1.9
3,127,552	-		HGI48_RS13980	0.62	-3.1
3,127,552	-		HGI48_RS13980	0.62	-1.4
3,127,552	-		HGI48_RS13980	0.62	-2.2
3,127,571	+		HGI48_RS13980	0.63	+0.0
3,127,571	+		HGI48_RS13980	0.63	-1.2
3,127,571	+		HGI48_RS13980	0.63	-0.4
3,127,572	-		HGI48_RS13980	0.63	-0.1
3,127,572	-		HGI48_RS13980	0.63	-1.5
3,127,572	-		HGI48_RS13980	0.63	+1.7
3,127,572	-		HGI48_RS13980	0.63	-0.4
3,127,574	-		HGI48_RS13980	0.63	-0.3
3,127,577	+		HGI48_RS13980	0.63	+0.6
3,127,577	+		HGI48_RS13980	0.63	-2.4
3,127,577	+		HGI48_RS13980	0.63	-0.4
3,127,578	-		HGI48_RS13980	0.63	-0.1
3,127,578	-				+0.8
3,127,578	-				+0.8
3,127,578	-		HGI48_RS13980	0.63	+0.2
3,127,583	-		HGI48_RS13980	0.63	-0.7
3,127,617	-		HGI48_RS13980	0.64	-0.8
3,127,617	-		HGI48_RS13980	0.64	-0.7
3,127,676	-		HGI48_RS13980	0.66	-0.6
3,127,676	-		HGI48_RS13980	0.66	-0.8
3,127,676	-		HGI48_RS13980	0.66	+0.0
3,127,676	-		HGI48_RS13980	0.66	-0.4
3,127,706	+		HGI48_RS13980	0.67	+0.1
3,127,718	-		HGI48_RS13980	0.68	-0.9
3,127,763	+		HGI48_RS13980	0.69	-0.8
3,127,763	+		HGI48_RS13980	0.69	-0.1
3,127,763	+		HGI48_RS13980	0.69	+0.1
3,127,764	-		HGI48_RS13980	0.69	+0.1
3,127,764	-		HGI48_RS13980	0.69	+0.5
3,127,764	-		HGI48_RS13980	0.69	-2.2
3,127,764	-		HGI48_RS13980	0.69	+0.1
3,127,764	-		HGI48_RS13980	0.69	-0.8
3,127,819	+		HGI48_RS13980	0.71	-0.6
3,127,889	+		HGI48_RS13980	0.74	-1.0
3,127,890	-		HGI48_RS13980	0.74	-0.4
3,127,952	-		HGI48_RS13980	0.76	-0.5
3,127,976	+		HGI48_RS13980	0.77	-1.5
3,127,996	+		HGI48_RS13980	0.77	-1.4
3,127,997	-				+0.8
3,128,028	-		HGI48_RS13980	0.78	+0.2
3,128,042	-		HGI48_RS13980	0.79	-0.5
3,128,072	+		HGI48_RS13980	0.80	+0.8
3,128,072	+				+0.8
3,128,072	+		HGI48_RS13980	0.80	-1.4
3,128,072	+		HGI48_RS13980	0.80	-1.5
3,128,072	+		HGI48_RS13980	0.80	-1.0
3,128,073	-		HGI48_RS13980	0.80	+1.3
3,128,073	-		HGI48_RS13980	0.80	+0.4
3,128,073	-		HGI48_RS13980	0.80	-0.2
3,128,099	-		HGI48_RS13980	0.81	+0.0
3,128,099	-		HGI48_RS13980	0.81	+0.1
3,128,099	-		HGI48_RS13980	0.81	+0.1
3,128,290	+		HGI48_RS13980	0.87	-1.1
3,128,291	-		HGI48_RS13980	0.87	-1.0
3,128,447	-				+0.5
3,128,549	-				-0.2
3,128,550	+				-0.3
3,128,710	-				+0.2
3,128,768	+				-0.8
3,128,841	+				+0.2
3,128,916	+		HGI48_RS13985	0.13	+0.6
3,129,017	+		HGI48_RS13985	0.19	-1.4
3,129,017	+		HGI48_RS13985	0.19	-2.7
3,129,018	-		HGI48_RS13985	0.19	-0.0
3,129,018	-		HGI48_RS13985	0.19	+1.1
3,129,024	+		HGI48_RS13985	0.19	-0.5
3,129,024	+		HGI48_RS13985	0.19	-0.3
3,129,025	-		HGI48_RS13985	0.19	-0.6
3,129,025	-		HGI48_RS13985	0.19	-0.8
3,129,123	+		HGI48_RS13985	0.24	-1.5
3,129,124	-		HGI48_RS13985	0.24	-0.2
3,129,152	-		HGI48_RS13985	0.26	+0.5
3,129,195	+		HGI48_RS13985	0.28	-0.2
3,129,207	+		HGI48_RS13985	0.29	-1.8
3,129,207	+		HGI48_RS13985	0.29	+1.1
3,129,208	-		HGI48_RS13985	0.29	-0.8
3,129,208	-		HGI48_RS13985	0.29	-0.1
3,129,208	-		HGI48_RS13985	0.29	-0.1
3,129,208	-		HGI48_RS13985	0.29	+0.3
3,129,236	+		HGI48_RS13985	0.30	-1.2
3,129,237	-		HGI48_RS13985	0.30	-1.5
3,129,237	-		HGI48_RS13985	0.30	-0.2
3,129,237	-		HGI48_RS13985	0.30	-0.8
3,129,281	+		HGI48_RS13985	0.33	+0.2
3,129,282	-		HGI48_RS13985	0.33	-0.1
3,129,307	+		HGI48_RS13985	0.34	+0.2
3,129,308	-		HGI48_RS13985	0.34	-2.0
3,129,308	-		HGI48_RS13985	0.34	-1.5
3,129,308	-		HGI48_RS13985	0.34	+0.6
3,129,380	-		HGI48_RS13985	0.38	+0.2
3,129,411	-		HGI48_RS13985	0.39	+0.5
3,129,455	+		HGI48_RS13985	0.42	-1.1
3,129,455	+				+1.4
3,129,456	-		HGI48_RS13985	0.42	-1.8
3,129,456	-		HGI48_RS13985	0.42	-2.0
3,129,456	-		HGI48_RS13985	0.42	-0.0
3,129,456	-		HGI48_RS13985	0.42	+0.1
3,129,459	+		HGI48_RS13985	0.42	-1.5
3,129,459	+		HGI48_RS13985	0.42	+1.0
3,129,459	+		HGI48_RS13985	0.42	-0.6
3,129,476	-		HGI48_RS13985	0.43	+1.1
3,129,546	-		HGI48_RS13985	0.47	+0.1
3,129,549	+		HGI48_RS13985	0.47	+0.2
3,129,550	-		HGI48_RS13985	0.47	-1.5
3,129,550	-		HGI48_RS13985	0.47	-1.5
3,129,550	-		HGI48_RS13985	0.47	+0.8
3,129,550	-		HGI48_RS13985	0.47	-1.2
3,129,664	+		HGI48_RS13985	0.53	+0.3
3,129,665	-		HGI48_RS13985	0.53	-0.5