Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13530

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,960,710	-		HGI48_RS13520	0.11	-0.0
2,960,716	+		HGI48_RS13520	0.13	+0.8
2,960,716	+		HGI48_RS13520	0.13	+0.8
2,960,717	-		HGI48_RS13520	0.13	-0.1
2,960,717	-		HGI48_RS13520	0.13	+1.3
2,960,717	-		HGI48_RS13520	0.13	+0.1
2,960,735	+		HGI48_RS13520	0.17	+0.9
2,960,735	+		HGI48_RS13520	0.17	+0.3
2,960,735	+		HGI48_RS13520	0.17	+1.5
2,960,736	-		HGI48_RS13520	0.18	+0.0
2,960,801	+		HGI48_RS13520	0.34	-0.5
2,960,801	+		HGI48_RS13520	0.34	-0.2
2,960,802	-		HGI48_RS13520	0.34	-1.7
2,960,802	-		HGI48_RS13520	0.34	+0.8
2,960,802	-		HGI48_RS13520	0.34	-1.8
2,960,802	-		HGI48_RS13520	0.34	+0.4
2,960,802	-		HGI48_RS13520	0.34	-0.7
2,960,837	+		HGI48_RS13520	0.42	-3.2
2,960,838	-		HGI48_RS13520	0.43	-0.5
2,960,838	-		HGI48_RS13520	0.43	-1.2
2,960,991	+		HGI48_RS13520	0.80	+0.4
2,960,992	-		HGI48_RS13520	0.81	+0.2
2,961,055	-				+2.2
2,961,057	+				-1.6
2,961,083	+				-1.1
2,961,083	+				-1.0
2,961,083	+				+0.7
2,961,083	+				-1.4
2,961,083	+				+1.2
2,961,083	+				+0.8
2,961,083	+				-0.2
2,961,083	+				-0.2
2,961,083	+				-2.0
2,961,083	+				+3.3
2,961,084	-				+1.2
2,961,084	-				-1.7
2,961,084	-				-1.8
2,961,084	-				-1.8
2,961,084	-				+1.6
2,961,084	-				-0.4
2,961,084	-				+0.1
2,961,084	-				-0.4
2,961,084	-				+0.4
2,961,084	-				+1.0
2,961,084	-				+2.8
2,961,085	+				+0.0
2,961,085	+				+0.5
2,961,085	+				+1.5
2,961,085	+				-0.1
2,961,085	+				-0.8
2,961,086	-				-0.7
2,961,086	-				+1.3
2,961,105	-				-0.0
2,961,124	+				+0.3
2,961,125	-				-0.8
2,961,177	-		HGI48_RS13525	0.18	+0.3
2,961,177	-		HGI48_RS13525	0.18	-1.2
2,961,177	-		HGI48_RS13525	0.18	-1.1
2,961,205	-		HGI48_RS13525	0.24	-1.6
2,961,205	-		HGI48_RS13525	0.24	-1.2
2,961,205	-		HGI48_RS13525	0.24	-0.2
2,961,263	+		HGI48_RS13525	0.38	-0.2
2,961,263	+		HGI48_RS13525	0.38	-1.4
2,961,289	+				+2.8
2,961,289	+		HGI48_RS13525	0.44	+1.0
2,961,290	-		HGI48_RS13525	0.45	-0.8
2,961,545	+				+0.6
2,961,555	+				+0.6
2,961,555	+				-0.9
2,961,593	-				-1.8
2,961,598	+				+1.2
2,961,598	+				-0.4
2,961,598	+				+0.1
2,961,599	-				+0.8
2,961,612	-				+0.8
2,961,612	-				-0.9
2,961,612	-				-0.6
2,961,615	+				-1.6
2,961,615	+				-2.0
2,961,616	-				+0.3
2,961,623	+				-0.2
2,961,624	-				+0.0
2,961,629	+				-0.5
2,961,630	-				+1.8
2,961,630	-				+0.6
2,961,630	-				+2.1
2,961,637	+				-1.8
2,961,638	-				+1.0
2,961,638	-				-0.6
2,961,638	-				+0.6
2,961,644	-				-1.6
2,961,682	+				+0.2
2,961,683	-				+0.4
2,961,709	-				-0.9
2,961,709	-				+2.0
2,961,712	+				-1.0
2,961,712	+				+0.9
2,961,712	+				+0.1
2,961,712	+				-2.6
2,961,712	+				+1.2
2,961,713	-				+0.8
2,961,713	-				+0.3
2,961,728	-				+1.1
2,961,728	-				-0.5
2,961,806	+		HGI48_RS13530	0.17	+0.2
2,961,821	+		HGI48_RS13530	0.20	-0.1
2,961,821	+		HGI48_RS13530	0.20	-0.6
2,961,822	-		HGI48_RS13530	0.20	-0.8
2,961,827	+		HGI48_RS13530	0.20	+0.3
2,961,828	-		HGI48_RS13530	0.21	+0.0
2,961,828	-		HGI48_RS13530	0.21	-0.4
2,961,828	-		HGI48_RS13530	0.21	+0.0
2,961,987	+		HGI48_RS13530	0.44	+0.4
2,961,987	+		HGI48_RS13530	0.44	-0.0
2,961,987	+				+1.5
2,961,987	+		HGI48_RS13530	0.44	+0.5
2,961,987	+		HGI48_RS13530	0.44	+0.1
2,961,987	+		HGI48_RS13530	0.44	-1.0
2,961,988	-		HGI48_RS13530	0.45	+0.5
2,961,988	-		HGI48_RS13530	0.45	-0.1
2,961,988	-		HGI48_RS13530	0.45	+1.9
2,961,988	-		HGI48_RS13530	0.45	-0.1
2,961,988	-		HGI48_RS13530	0.45	-0.8
2,961,988	-		HGI48_RS13530	0.45	+0.0
2,962,043	+		HGI48_RS13530	0.53	-0.8
2,962,043	+		HGI48_RS13530	0.53	-0.7
2,962,044	-		HGI48_RS13530	0.53	+0.2
2,962,044	-		HGI48_RS13530	0.53	-0.5
2,962,044	-		HGI48_RS13530	0.53	-0.2
2,962,044	-		HGI48_RS13530	0.53	-2.4
2,962,044	-		HGI48_RS13530	0.53	-0.1
2,962,044	-		HGI48_RS13530	0.53	-0.2
2,962,044	-		HGI48_RS13530	0.53	+1.8
2,962,148	+		HGI48_RS13530	0.68	-0.0
2,962,148	+		HGI48_RS13530	0.68	-1.5
2,962,148	+		HGI48_RS13530	0.68	+0.5
2,962,148	+		HGI48_RS13530	0.68	-1.2
2,962,148	+		HGI48_RS13530	0.68	-2.4
2,962,149	-		HGI48_RS13530	0.69	+0.5
2,962,149	-		HGI48_RS13530	0.69	-1.0
2,962,149	-		HGI48_RS13530	0.69	-0.0
2,962,149	-		HGI48_RS13530	0.69	+0.4
2,962,152	-		HGI48_RS13530	0.69	-0.5
2,962,152	-		HGI48_RS13530	0.69	+1.8
2,962,152	-		HGI48_RS13530	0.69	-1.2
2,962,152	-		HGI48_RS13530	0.69	+0.4
2,962,161	-		HGI48_RS13530	0.70	-0.8
2,962,166	+		HGI48_RS13530	0.71	+0.4
2,962,340	+				+0.5
2,962,356	+				+0.0
2,962,370	-				-2.0
2,962,395	+				+0.0
2,962,395	+				-0.6
2,962,395	+				-0.2
2,962,395	+				-0.2
2,962,395	+				+0.4
2,962,395	+				-1.6
2,962,395	+				-0.2
2,962,396	-				+0.0
2,962,396	-				-1.6
2,962,396	-				-1.5
2,962,396	-				-0.6
2,962,396	-				-2.0
2,962,396	-				-2.0
2,962,400	-				+0.8
2,962,400	-				-1.9
2,962,400	-				-1.6
2,962,400	-				-3.1
2,962,421	+				-2.6
2,962,426	-				-0.8
2,962,439	-				-1.7
2,962,439	-				-1.4
2,962,442	+				-0.6
2,962,442	+				+0.2
2,962,464	+				-0.6
2,962,475	-				-2.0
2,962,499	+				-1.8
2,962,500	-				-1.6
2,962,652	+		HGI48_RS13535	0.50	-2.4
2,962,652	+		HGI48_RS13535	0.50	-1.2
2,962,653	-		HGI48_RS13535	0.50	-0.6
2,962,653	-		HGI48_RS13535	0.50	-1.0
2,962,686	-		HGI48_RS13535	0.61	-2.7
2,962,765	+		HGI48_RS13535	0.87	-0.7
2,962,766	-		HGI48_RS13535	0.88	+0.7
2,962,769	+		HGI48_RS13535	0.89	+0.8
2,962,770	-		HGI48_RS13535	0.89	+0.3
2,962,770	-		HGI48_RS13535	0.89	-2.6
2,962,770	-		HGI48_RS13535	0.89	-0.1
2,962,770	-		HGI48_RS13535	0.89	-1.8
2,962,786	+				-1.5
2,962,787	-				+0.8
2,962,787	-				+1.8
2,962,787	-				+1.2
2,962,801	-				+0.1
2,962,821	-				+0.6
2,962,886	+		HGI48_RS13540	0.18	-1.6
2,963,037	-		HGI48_RS13540	0.53	+0.0
2,963,103	+		HGI48_RS13540	0.68	-1.6
2,963,103	+		HGI48_RS13540	0.68	+0.0
2,963,103	+		HGI48_RS13540	0.68	+0.0
2,963,103	+		HGI48_RS13540	0.68	-0.5
2,963,103	+		HGI48_RS13540	0.68	+0.5
2,963,104	-		HGI48_RS13540	0.68	-1.0
2,963,104	-		HGI48_RS13540	0.68	-0.2
2,963,208	+				-0.4
2,963,238	+				-1.2
2,963,239	-				-2.0
2,963,267	-				-1.0
2,963,290	+				+1.4
2,963,302	+				-0.8
2,963,302	+				-0.6
2,963,303	-				+0.0
2,963,303	-				-2.4
2,963,303	-				-2.0
2,963,303	-				+0.6
2,963,304	+				-0.4
2,963,304	+				-0.0
2,963,304	+				+0.4
2,963,304	+				-1.6
2,963,304	+				-0.5
2,963,304	+				-0.6
2,963,304	+				-0.2
2,963,305	-				+0.8
2,963,305	-				+1.4
2,963,305	-				-0.6
2,963,305	-				-0.1
2,963,305	-				-0.2
2,963,305	-				-0.8
2,963,308	+				-0.9
2,963,308	+				-0.4
2,963,308	+				-0.6
2,963,309	-				-0.7
2,963,311	+				+0.2
2,963,311	+				-0.8
2,963,311	+				-2.4
2,963,318	-				+0.7
2,963,322	+				+0.0
2,963,323	-				-0.2
2,963,326	+				-1.4
2,963,326	+				+0.0
2,963,327	-				-0.6
2,963,328	+				-1.7
2,963,329	-				-0.2