Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13480

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,951,165	-				-1.2
2,951,205	+				+2.3
2,951,249	+				-1.2
2,951,249	+				+1.6
2,951,249	+				+0.4
2,951,249	+				-0.5
2,951,249	+				-1.6
2,951,249	+				+0.6
2,951,249	+				+0.8
2,951,250	-				-0.6
2,951,250	-				+1.0
2,951,250	-				-1.0
2,951,282	+				-0.8
2,951,282	+				+0.6
2,951,282	+				-0.8
2,951,282	+				+1.0
2,951,282	+				-0.6
2,951,283	-				-1.9
2,951,341	-		HGI48_RS13475	0.15	-1.0
2,951,358	+		HGI48_RS13475	0.17	+1.8
2,951,359	-		HGI48_RS13475	0.17	-0.8
2,951,368	-				+1.2
2,951,428	-		HGI48_RS13475	0.25	-0.1
2,951,428	-		HGI48_RS13475	0.25	+0.8
2,951,443	-				+0.8
2,951,487	+		HGI48_RS13475	0.31	-1.8
2,951,487	+				+1.2
2,951,487	+				+2.6
2,951,488	-		HGI48_RS13475	0.31	+0.5
2,951,557	-		HGI48_RS13475	0.39	+0.8
2,951,580	+		HGI48_RS13475	0.41	+0.1
2,951,581	-		HGI48_RS13475	0.41	+1.6
2,951,584	+				-0.8
2,951,584	+		HGI48_RS13475	0.42	-0.1
2,951,585	-		HGI48_RS13475	0.42	-0.1
2,951,663	+				+0.8
2,951,663	+		HGI48_RS13475	0.50	-0.8
2,951,663	+		HGI48_RS13475	0.50	-0.2
2,951,663	+		HGI48_RS13475	0.50	+0.6
2,951,663	+		HGI48_RS13475	0.50	-0.8
2,951,663	+		HGI48_RS13475	0.50	-0.4
2,951,663	+				-0.2
2,951,663	+		HGI48_RS13475	0.50	-2.4
2,951,663	+		HGI48_RS13475	0.50	-1.2
2,951,663	+		HGI48_RS13475	0.50	+0.4
2,951,663	+		HGI48_RS13475	0.50	+0.0
2,951,664	-		HGI48_RS13475	0.50	-1.6
2,951,688	+		HGI48_RS13475	0.53	+0.8
2,951,689	-		HGI48_RS13475	0.53	+1.2
2,951,689	-		HGI48_RS13475	0.53	-0.4
2,951,689	-		HGI48_RS13475	0.53	-0.2
2,951,715	-		HGI48_RS13475	0.56	+0.8
2,951,829	+		HGI48_RS13475	0.68	-1.2
2,951,842	+		HGI48_RS13475	0.69	+0.2
2,951,842	+				+3.8
2,951,842	+		HGI48_RS13475	0.69	-0.2
2,951,843	-		HGI48_RS13475	0.69	-0.2
2,951,878	+		HGI48_RS13475	0.73	+0.4
2,951,905	-		HGI48_RS13475	0.76	+2.4
2,951,911	-		HGI48_RS13475	0.77	+0.1
2,951,928	+		HGI48_RS13475	0.79	+2.3
2,951,941	-		HGI48_RS13475	0.80	-0.0
2,951,941	-		HGI48_RS13475	0.80	+0.9
2,951,941	-		HGI48_RS13475	0.80	+1.0
2,951,941	-		HGI48_RS13475	0.80	-1.2
2,951,941	-				+1.2
2,951,941	-				+2.8
2,951,942	+		HGI48_RS13475	0.80	-0.2
2,952,028	-		HGI48_RS13475	0.89	+1.0
2,952,090	+				+1.2
2,952,090	+				-2.6
2,952,091	-				+1.3
2,952,109	-				-2.2
2,952,109	-				+0.2
2,952,126	+				+0.2
2,952,131	+				+0.8
2,952,132	-				+0.1
2,952,132	-				-2.4
2,952,132	-				+0.3
2,952,138	+				-1.0
2,952,192	-				+0.8
2,952,211	-				-0.4
2,952,229	+				+0.2
2,952,229	+				-0.8
2,952,229	+				+0.1
2,952,230	-				+1.2
2,952,230	-				+0.9
2,952,230	-				+2.1
2,952,230	-				-0.2
2,952,230	-				+0.2
2,952,230	-				-0.5
2,952,230	-				-1.2
2,952,230	-				-1.2
2,952,230	-				-1.8
2,952,233	-				-0.2
2,952,233	-				-0.1
2,952,233	-				+0.3
2,952,259	+				-1.4
2,952,260	-				+1.2
2,952,260	-				+0.2
2,952,303	-				+1.5
2,952,335	+				+0.7
2,952,335	+				-1.2
2,952,335	+				+0.5
2,952,336	-				+0.1
2,952,391	+		HGI48_RS13480	0.12	-1.9
2,952,392	-		HGI48_RS13480	0.12	+1.5
2,952,468	-		HGI48_RS13480	0.16	-1.4
2,952,474	+		HGI48_RS13480	0.16	-0.4
2,952,549	-		HGI48_RS13480	0.20	+0.5
2,952,549	-		HGI48_RS13480	0.20	+0.1
2,952,671	+		HGI48_RS13480	0.27	+1.1
2,952,673	+				+1.8
2,952,673	+		HGI48_RS13480	0.27	-1.4
2,952,673	+		HGI48_RS13480	0.27	-0.8
2,952,674	-		HGI48_RS13480	0.27	-0.5
2,952,674	-				-0.2
2,952,758	+		HGI48_RS13480	0.31	-1.0
2,952,758	+		HGI48_RS13480	0.31	-0.4
2,952,758	+		HGI48_RS13480	0.31	-1.2
2,952,759	-		HGI48_RS13480	0.31	+1.3
2,952,761	-		HGI48_RS13480	0.31	-0.8
2,952,761	-		HGI48_RS13480	0.31	+0.2
2,952,761	-		HGI48_RS13480	0.31	+1.6
2,952,761	-				+0.2
2,952,761	-		HGI48_RS13480	0.31	+0.6
2,952,773	+		HGI48_RS13480	0.32	+0.5
2,952,774	-		HGI48_RS13480	0.32	-0.8
2,952,778	+		HGI48_RS13480	0.32	-1.0
2,952,779	-		HGI48_RS13480	0.32	-2.0
2,952,779	-				+0.8
2,952,779	-		HGI48_RS13480	0.32	-0.6
2,952,779	-		HGI48_RS13480	0.32	-2.0
2,952,779	-		HGI48_RS13480	0.32	+0.6
2,952,779	-		HGI48_RS13480	0.32	-2.2
2,952,785	+		HGI48_RS13480	0.33	-0.6
2,952,785	+		HGI48_RS13480	0.33	-1.2
2,952,786	-		HGI48_RS13480	0.33	-2.0
2,952,786	-		HGI48_RS13480	0.33	-0.5
2,952,791	+		HGI48_RS13480	0.33	-1.8
2,952,905	+		HGI48_RS13480	0.39	-0.1
2,952,906	-		HGI48_RS13480	0.39	-2.0
2,953,003	+		HGI48_RS13480	0.44	+0.2
2,953,004	-		HGI48_RS13480	0.44	+1.0
2,953,015	+		HGI48_RS13480	0.45	-0.1
2,953,015	+				+1.8
2,953,015	+		HGI48_RS13480	0.45	-2.0
2,953,015	+		HGI48_RS13480	0.45	+0.3
2,953,016	-				-0.8
2,953,016	-		HGI48_RS13480	0.45	-0.1
2,953,016	-		HGI48_RS13480	0.45	-0.5
2,953,058	+		HGI48_RS13480	0.47	+0.0
2,953,058	+		HGI48_RS13480	0.47	-0.8
2,953,058	+		HGI48_RS13480	0.47	-1.0
2,953,058	+		HGI48_RS13480	0.47	+0.8
2,953,059	-		HGI48_RS13480	0.47	-2.8
2,953,166	+		HGI48_RS13480	0.52	+1.6
2,953,188	+		HGI48_RS13480	0.54	-2.2
2,953,214	+		HGI48_RS13480	0.55	+0.8
2,953,259	+		HGI48_RS13480	0.57	-1.4
2,953,259	+		HGI48_RS13480	0.57	-0.0
2,953,259	+		HGI48_RS13480	0.57	-1.1
2,953,260	-		HGI48_RS13480	0.57	+1.0
2,953,260	-		HGI48_RS13480	0.57	-2.4
2,953,262	+		HGI48_RS13480	0.57	+2.4
2,953,262	+		HGI48_RS13480	0.57	-1.2
2,953,263	-		HGI48_RS13480	0.57	+0.5
2,953,263	-		HGI48_RS13480	0.57	+0.4
2,953,263	-		HGI48_RS13480	0.57	-0.1
2,953,263	-		HGI48_RS13480	0.57	-1.6
2,953,263	-		HGI48_RS13480	0.57	-0.2
2,953,303	+		HGI48_RS13480	0.59	+0.3
2,953,316	+		HGI48_RS13480	0.60	-0.6
2,953,355	+		HGI48_RS13480	0.62	-2.0
2,953,360	+		HGI48_RS13480	0.62	-0.5
2,953,360	+		HGI48_RS13480	0.62	-0.1
2,953,360	+		HGI48_RS13480	0.62	-1.7
2,953,361	-		HGI48_RS13480	0.63	-1.2
2,953,408	+		HGI48_RS13480	0.65	+0.6
2,953,408	+		HGI48_RS13480	0.65	-0.0
2,953,409	-		HGI48_RS13480	0.65	-0.5
2,953,409	-		HGI48_RS13480	0.65	+0.2
2,953,511	+		HGI48_RS13480	0.70	-1.2
2,953,511	+		HGI48_RS13480	0.70	+0.0
2,953,567	+		HGI48_RS13480	0.73	-1.0
2,953,567	+		HGI48_RS13480	0.73	+1.3
2,953,567	+		HGI48_RS13480	0.73	-0.1
2,953,567	+				+0.8
2,953,572	-		HGI48_RS13480	0.73	-1.6
2,953,593	-		HGI48_RS13480	0.75	-1.6
2,953,593	-		HGI48_RS13480	0.75	-0.1
2,953,610	+		HGI48_RS13480	0.75	-2.8
2,953,611	-		HGI48_RS13480	0.76	-2.2
2,953,633	+		HGI48_RS13480	0.77	-0.8
2,953,634	-		HGI48_RS13480	0.77	-1.8
2,953,695	+		HGI48_RS13480	0.80	-0.4
2,953,695	+		HGI48_RS13480	0.80	-0.4
2,953,695	+		HGI48_RS13480	0.80	+0.3
2,953,695	+		HGI48_RS13480	0.80	-0.4
2,953,695	+		HGI48_RS13480	0.80	-0.0
2,953,793	+		HGI48_RS13480	0.85	+0.1
2,953,794	-		HGI48_RS13480	0.85	+0.8
2,953,816	+		HGI48_RS13480	0.86	+0.1
2,953,816	+				+1.5
2,953,819	+		HGI48_RS13480	0.86	-0.7
2,953,819	+				-0.8
2,953,819	+				+1.2
2,953,820	-		HGI48_RS13480	0.86	+0.4
2,953,857	+		HGI48_RS13480	0.88	-0.4
2,953,858	-		HGI48_RS13480	0.88	-0.2
2,953,882	+		HGI48_RS13480	0.90	+0.4
2,953,882	+		HGI48_RS13480	0.90	+0.2
2,953,882	+		HGI48_RS13480	0.90	+0.4
2,953,883	-		HGI48_RS13480	0.90	-1.2
2,953,938	-				+0.0
2,953,938	-				-0.0
2,953,979	+				+0.5
2,953,981	+				+0.4
2,954,000	+				+3.6
2,954,012	+				+0.8
2,954,095	+				-1.6
2,954,102	-				+0.3
2,954,122	+				+2.2
2,954,122	+				-0.0
2,954,123	-				-0.2
2,954,123	-				-2.0
2,954,151	+				-1.2
2,954,154	-				-1.2
2,954,158	+				-1.6
2,954,159	-				-0.6
2,954,165	+				-2.0
2,954,165	+				+0.9
2,954,165	+				+0.8
2,954,165	+				-2.2
2,954,165	+				-1.9
2,954,165	+				-0.2
2,954,166	-				+1.2
2,954,166	-				-0.8
2,954,166	-				-0.2
2,954,167	+				+0.1
2,954,167	+				+0.5
2,954,167	+				-1.2
2,954,167	+				+1.3
2,954,168	-				+0.1
2,954,168	-				-0.4
2,954,168	-				-1.6
2,954,168	-				-0.4
2,954,168	-				+0.8
2,954,168	-				+1.0
2,954,168	-				+0.2
2,954,201	+				+1.6
2,954,229	+				-0.2
2,954,229	+				-0.4
2,954,229	+				-0.8
2,954,229	+				-0.5
2,954,229	+				-0.4
2,954,230	-				-0.8
2,954,232	-				+0.2
2,954,282	-				+0.8
2,954,282	-				-0.1
2,954,315	+		HGI48_RS13485	0.12	+0.1
2,954,316	-		HGI48_RS13485	0.12	-0.2
2,954,379	-		HGI48_RS13485	0.19	-0.8
2,954,429	+		HGI48_RS13485	0.24	-2.6
2,954,429	+		HGI48_RS13485	0.24	+0.5
2,954,430	-		HGI48_RS13485	0.24	+0.3
2,954,483	+				+0.2
2,954,483	+		HGI48_RS13485	0.29	-0.6
2,954,483	+		HGI48_RS13485	0.29	+0.8
2,954,483	+		HGI48_RS13485	0.29	+0.2
2,954,483	+		HGI48_RS13485	0.29	+0.5
2,954,494	-				-0.8
2,954,523	+		HGI48_RS13485	0.34	-0.3
2,954,524	-		HGI48_RS13485	0.34	-1.2
2,954,524	-		HGI48_RS13485	0.34	+0.0
2,954,536	-		HGI48_RS13485	0.35	-0.6
2,954,538	+		HGI48_RS13485	0.35	-0.8
2,954,641	-		HGI48_RS13485	0.46	-1.8
2,954,689	-				+0.2
2,954,791	+				+0.2
2,954,930	+		HGI48_RS13485	0.76	-0.8
2,954,930	+		HGI48_RS13485	0.76	-2.7
2,954,930	+		HGI48_RS13485	0.76	+1.0
2,954,930	+		HGI48_RS13485	0.76	+1.5
2,954,930	+		HGI48_RS13485	0.76	+1.3
2,954,931	-		HGI48_RS13485	0.77	-2.6
2,954,931	-				+0.8
2,954,931	-		HGI48_RS13485	0.77	-0.6
2,954,931	-		HGI48_RS13485	0.77	+1.3
2,954,931	-		HGI48_RS13485	0.77	-0.5
2,954,970	+		HGI48_RS13485	0.81	-0.8
2,954,970	+		HGI48_RS13485	0.81	-1.6
2,954,997	+		HGI48_RS13485	0.83	-1.6
2,954,997	+		HGI48_RS13485	0.83	-0.4
2,954,998	-		HGI48_RS13485	0.84	+0.2
2,954,998	-		HGI48_RS13485	0.84	-0.2
2,954,998	-		HGI48_RS13485	0.84	+1.8
2,954,998	-		HGI48_RS13485	0.84	+1.5
2,954,998	-		HGI48_RS13485	0.84	-0.0
2,954,998	-		HGI48_RS13485	0.84	+2.2