Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12980

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,839,983	+		HGI48_RS12975	0.24	+1.6
2,839,983	+		HGI48_RS12975	0.24	-0.8
2,839,983	+		HGI48_RS12975	0.24	-1.4
2,839,984	-		HGI48_RS12975	0.24	-0.4
2,839,984	-		HGI48_RS12975	0.24	-1.6
2,839,984	-		HGI48_RS12975	0.24	+1.0
2,839,984	-		HGI48_RS12975	0.24	-0.2
2,839,984	-		HGI48_RS12975	0.24	-1.7
2,839,984	-		HGI48_RS12975	0.24	+0.8
2,839,986	+				-0.8
2,840,011	+		HGI48_RS12975	0.26	-1.1
2,840,017	+		HGI48_RS12975	0.27	+0.8
2,840,017	+		HGI48_RS12975	0.27	+0.1
2,840,088	+		HGI48_RS12975	0.33	+0.0
2,840,095	+				+0.8
2,840,098	-		HGI48_RS12975	0.34	-1.0
2,840,098	-		HGI48_RS12975	0.34	-0.3
2,840,135	-		HGI48_RS12975	0.38	-0.6
2,840,135	-		HGI48_RS12975	0.38	-0.2
2,840,135	-		HGI48_RS12975	0.38	-1.8
2,840,135	-		HGI48_RS12975	0.38	-1.2
2,840,148	+		HGI48_RS12975	0.39	-0.5
2,840,148	+		HGI48_RS12975	0.39	-1.8
2,840,149	-				-0.8
2,840,157	+		HGI48_RS12975	0.40	-0.6
2,840,158	-				-0.2
2,840,176	+		HGI48_RS12975	0.41	+0.4
2,840,177	-		HGI48_RS12975	0.41	-0.6
2,840,244	+		HGI48_RS12975	0.47	-2.2
2,840,245	-				-0.2
2,840,245	-		HGI48_RS12975	0.48	-1.8
2,840,245	-		HGI48_RS12975	0.48	+0.8
2,840,245	-		HGI48_RS12975	0.48	-0.8
2,840,256	+		HGI48_RS12975	0.49	+1.6
2,840,291	+		HGI48_RS12975	0.52	-1.2
2,840,292	-		HGI48_RS12975	0.52	-1.2
2,840,295	+		HGI48_RS12975	0.52	+0.8
2,840,295	+		HGI48_RS12975	0.52	-2.8
2,840,295	+				+0.8
2,840,296	-		HGI48_RS12975	0.52	-0.8
2,840,303	-				+3.3
2,840,303	-		HGI48_RS12975	0.53	-1.6
2,840,338	+		HGI48_RS12975	0.56	-1.2
2,840,412	+		HGI48_RS12975	0.63	-0.5
2,840,412	+				+0.2
2,840,412	+		HGI48_RS12975	0.63	-2.6
2,840,413	-		HGI48_RS12975	0.63	+0.0
2,840,413	-		HGI48_RS12975	0.63	-0.2
2,840,413	-		HGI48_RS12975	0.63	-2.1
2,840,413	-				-0.8
2,840,434	+		HGI48_RS12975	0.65	-1.8
2,840,435	-		HGI48_RS12975	0.65	+0.2
2,840,452	+		HGI48_RS12975	0.66	+0.1
2,840,452	+		HGI48_RS12975	0.66	+0.1
2,840,452	+				-0.8
2,840,453	-		HGI48_RS12975	0.66	-1.8
2,840,491	+		HGI48_RS12975	0.70	-1.2
2,840,581	+		HGI48_RS12975	0.78	-0.4
2,840,582	-		HGI48_RS12975	0.78	+2.3
2,840,585	+		HGI48_RS12975	0.78	-1.8
2,840,586	-				-0.8
2,840,618	-		HGI48_RS12975	0.81	-1.1
2,840,618	-		HGI48_RS12975	0.81	-2.7
2,840,618	-		HGI48_RS12975	0.81	-1.1
2,840,668	+		HGI48_RS12975	0.86	-1.8
2,840,668	+		HGI48_RS12975	0.86	-1.6
2,840,680	+		HGI48_RS12975	0.87	+0.7
2,840,681	-		HGI48_RS12975	0.87	-0.6
2,840,689	+		HGI48_RS12975	0.88	+0.4
2,840,689	+		HGI48_RS12975	0.88	-0.9
2,840,690	-		HGI48_RS12975	0.88	+0.1
2,840,690	-				+1.3
2,840,690	-		HGI48_RS12975	0.88	+0.8
2,840,701	+		HGI48_RS12975	0.89	+0.1
2,840,702	-		HGI48_RS12975	0.89	-2.1
2,840,702	-		HGI48_RS12975	0.89	-1.8
2,840,702	-		HGI48_RS12975	0.89	-1.2
2,840,729	-				+0.8
2,840,737	+				-2.1
2,840,770	+				-0.4
2,840,770	+				-1.2
2,840,802	-				-0.4
2,840,807	+				-1.8
2,840,807	+				-2.4
2,840,807	+				-0.2
2,840,807	+				-0.7
2,840,807	+				-1.1
2,840,808	-				-1.2
2,840,808	-				+0.5
2,840,822	-				-1.6
2,840,865	+				-0.1
2,840,866	-				+1.9
2,840,866	-				+0.4
2,840,866	-				-0.5
2,840,867	+				+2.8
2,840,867	+				-0.2
2,840,904	+				-0.6
2,840,905	-				-1.6
2,840,910	+				-1.9
2,840,954	+				-0.8
2,840,954	+				-1.0
2,840,954	+				-1.6
2,840,955	-				-1.6
2,840,956	+				-1.8
2,840,957	-				-2.4
2,841,012	-		HGI48_RS12980	0.15	+0.3
2,841,047	-		HGI48_RS12980	0.25	-0.9
2,841,072	+		HGI48_RS12980	0.31	-0.8
2,841,075	+		HGI48_RS12980	0.32	-0.1
2,841,076	-		HGI48_RS12980	0.32	-3.2
2,841,181	+		HGI48_RS12980	0.60	-2.1
2,841,389	+				-0.2
2,841,477	-				+0.8
2,841,481	-				-1.4
2,841,487	+				-0.1
2,841,506	-				-0.7
2,841,520	+				-1.6
2,841,521	-				+0.0
2,841,545	-				+0.2
2,841,582	+				+0.4
2,841,587	+				+0.0
2,841,633	+		HGI48_RS12985	0.12	-1.2
2,841,636	+		HGI48_RS12985	0.12	-0.5
2,841,684	+				+0.8
2,841,684	+		HGI48_RS12985	0.16	-0.2
2,841,685	-				+0.8
2,841,731	+		HGI48_RS12985	0.21	-2.1
2,841,731	+		HGI48_RS12985	0.21	-0.0
2,841,732	-		HGI48_RS12985	0.21	-1.2
2,841,747	+		HGI48_RS12985	0.22	-0.8
2,841,770	+		HGI48_RS12985	0.24	-2.1
2,841,816	+		HGI48_RS12985	0.29	-0.5
2,841,817	-		HGI48_RS12985	0.29	-0.9
2,841,817	-		HGI48_RS12985	0.29	-0.0
2,841,834	+		HGI48_RS12985	0.30	+0.2
2,841,895	-		HGI48_RS12985	0.36	-0.5
2,841,895	-		HGI48_RS12985	0.36	-1.8
2,841,897	-		HGI48_RS12985	0.36	-1.6
2,841,904	+		HGI48_RS12985	0.37	-0.8
2,841,904	+		HGI48_RS12985	0.37	+0.8
2,841,905	-		HGI48_RS12985	0.37	-1.5
2,841,907	+		HGI48_RS12985	0.37	-1.5
2,841,907	+		HGI48_RS12985	0.37	-0.7
2,841,908	-				-0.2
2,841,944	+		HGI48_RS12985	0.40	-1.2
2,841,944	+		HGI48_RS12985	0.40	+0.2
2,841,945	-		HGI48_RS12985	0.41	+0.1
2,841,945	-		HGI48_RS12985	0.41	-1.0
2,841,945	-		HGI48_RS12985	0.41	-0.6
2,841,948	-		HGI48_RS12985	0.41	-0.4
2,841,976	-		HGI48_RS12985	0.43	-0.1
2,842,091	-		HGI48_RS12985	0.54	+1.6
2,842,104	-		HGI48_RS12985	0.55	+0.0
2,842,104	-				-0.2
2,842,104	-		HGI48_RS12985	0.55	+1.8
2,842,137	+		HGI48_RS12985	0.58	-0.3
2,842,237	-		HGI48_RS12985	0.68	-0.1
2,842,237	-		HGI48_RS12985	0.68	+0.8
2,842,237	-				-0.8
2,842,247	+		HGI48_RS12985	0.69	+0.0
2,842,247	+		HGI48_RS12985	0.69	-0.7
2,842,247	+		HGI48_RS12985	0.69	-0.6
2,842,248	-		HGI48_RS12985	0.69	-0.9
2,842,248	-		HGI48_RS12985	0.69	+1.1
2,842,251	+		HGI48_RS12985	0.69	-1.2
2,842,251	+		HGI48_RS12985	0.69	-1.8
2,842,251	+		HGI48_RS12985	0.69	-0.7
2,842,251	+		HGI48_RS12985	0.69	-2.1
2,842,252	-		HGI48_RS12985	0.69	+0.0
2,842,252	-		HGI48_RS12985	0.69	-0.6
2,842,252	-		HGI48_RS12985	0.69	-0.4
2,842,258	+		HGI48_RS12985	0.70	+0.8
2,842,259	-				+0.8
2,842,259	-		HGI48_RS12985	0.70	-0.6
2,842,277	+		HGI48_RS12985	0.71	+0.8
2,842,318	+		HGI48_RS12985	0.75	-2.2
2,842,318	+				+0.2