Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12685

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,770,766	+		HGI48_RS12675	0.87	+0.3
2,770,766	+				-0.8
2,770,856	+				-0.2
2,770,856	+				-0.6
2,770,856	+				-0.7
2,770,857	-				-0.8
2,770,857	-				-0.9
2,770,892	-				+0.8
2,770,892	-				+1.8
2,770,893	+				-0.4
2,770,894	-				+1.5
2,770,894	-				-0.4
2,770,894	-				-0.3
2,770,894	-				+1.1
2,770,894	-				+0.0
2,770,894	-				-0.4
2,770,894	-				-1.6
2,770,907	+				+1.0
2,770,907	+				+0.1
2,770,907	+				-0.8
2,770,908	-				+0.3
2,770,908	-				+0.1
2,770,910	+				+0.2
2,770,911	-				+0.9
2,770,911	-				+1.5
2,770,911	-				+0.2
2,770,911	-				-2.0
2,770,911	-				-1.4
2,770,911	-				-1.6
2,770,911	-				-2.0
2,770,911	-				-1.1
2,770,913	+				-2.2
2,770,914	-				-0.7
2,770,928	+				-1.6
2,770,929	-				-0.7
2,770,931	+				-1.6
2,770,946	+				-1.0
2,770,947	-				-0.5
2,770,947	-				+0.5
2,770,947	-				-0.1
2,770,960	-				-2.0
2,770,960	-				-2.2
2,770,964	+				-0.2
2,770,964	+				+0.4
2,770,964	+				-0.2
2,770,964	+				+0.2
2,770,965	-				-0.8
2,770,965	-				+1.2
2,770,965	-				+0.8
2,770,965	-				+1.1
2,770,967	+				-1.4
2,770,968	-				-0.1
2,770,978	-				+0.0
2,771,029	-				-2.6
2,771,029	-				-0.6
2,771,117	+				-0.6
2,771,161	+				-0.2
2,771,205	+		HGI48_RS12680	0.26	-1.0
2,771,206	-		HGI48_RS12680	0.27	-1.0
2,771,271	+				-0.8
2,771,271	+				-0.6
2,771,271	+				+0.2
2,771,272	-				-0.2
2,771,272	-				+0.5
2,771,272	-				-1.6
2,771,274	+				-1.6
2,771,274	+				-0.8
2,771,275	-				-1.0
2,771,275	-				-0.3
2,771,275	-				-2.9
2,771,275	-				+0.8
2,771,275	-				+0.8
2,771,275	-				+0.3
2,771,284	+				+0.0
2,771,285	-				-0.8
2,771,285	-				+0.8
2,771,285	-				+1.3
2,771,358	-				-2.2
2,771,365	+				-0.2
2,771,366	-				-0.2
2,771,371	+				-0.1
2,771,371	+				-1.0
2,771,371	+				-1.2
2,771,374	+				+1.2
2,771,420	-				+0.3
2,771,477	+				-2.1
2,771,478	-				-1.8
2,771,478	-				-1.2
2,771,479	+				-2.2
2,771,479	+				-0.4
2,771,479	+				-0.8
2,771,479	+				-1.2
2,771,480	-				-0.8
2,771,480	-				-1.6
2,771,518	+				-0.7
2,771,519	-				+0.8
2,771,606	+				-0.8
2,771,607	-				-0.2
2,771,607	-				+0.8
2,771,626	+				+0.1
2,771,626	+				-1.6
2,771,626	+				-0.8
2,771,626	+				-0.8
2,771,627	-				-1.8
2,771,627	-				-2.4
2,771,627	-				+0.2
2,771,627	-				-0.8
2,771,638	+				+0.3
2,771,638	+				+1.6
2,771,727	+				-2.0
2,771,727	+				+0.3
2,771,728	-				+1.2
2,771,728	-				-0.2
2,771,875	+		HGI48_RS12685	0.21	-2.4
2,771,928	+		HGI48_RS12685	0.26	-0.4
2,771,928	+		HGI48_RS12685	0.26	-1.2
2,771,928	+		HGI48_RS12685	0.26	+0.4
2,771,928	+		HGI48_RS12685	0.26	-2.2
2,771,929	-		HGI48_RS12685	0.26	-0.0
2,771,929	-		HGI48_RS12685	0.26	+0.8
2,771,953	-				+1.8
2,771,956	-		HGI48_RS12685	0.29	+0.5
2,771,956	-		HGI48_RS12685	0.29	-2.0
2,771,956	-		HGI48_RS12685	0.29	-0.2
2,771,977	+		HGI48_RS12685	0.31	-0.4
2,771,977	+				+0.8
2,771,977	+		HGI48_RS12685	0.31	-0.6
2,771,977	+		HGI48_RS12685	0.31	-1.0
2,771,978	-		HGI48_RS12685	0.31	+0.4
2,771,978	-		HGI48_RS12685	0.31	+0.0
2,772,157	+		HGI48_RS12685	0.49	-1.9
2,772,305	+		HGI48_RS12685	0.63	-0.7
2,772,305	+		HGI48_RS12685	0.63	-2.0
2,772,305	+		HGI48_RS12685	0.63	-1.8
2,772,488	+		HGI48_RS12685	0.81	-0.2
2,772,488	+		HGI48_RS12685	0.81	+1.9
2,772,488	+		HGI48_RS12685	0.81	+0.3
2,772,489	-				-0.2
2,772,489	-		HGI48_RS12685	0.81	-1.4
2,772,489	-		HGI48_RS12685	0.81	-1.6
2,772,502	+		HGI48_RS12685	0.82	+0.2
2,772,765	+				-0.6
2,772,778	+				-0.7
2,772,778	+				+0.2
2,772,817	-				-0.1
2,772,817	-				+1.5
2,772,817	-				+0.2
2,772,817	-				+0.3
2,772,817	-				+0.0
2,772,817	-				+0.0
2,772,822	+				+0.2
2,772,822	+				+2.1
2,772,822	+				+1.3
2,772,822	+				-0.4
2,772,823	-				-2.2
2,772,823	-				-0.8
2,772,823	-				-1.8
2,772,823	-				-1.6
2,772,823	-				-0.1
2,772,823	-				-0.8
2,772,844	-				+0.0
2,772,844	-				-1.6
2,772,884	+				-0.2
2,772,885	-				+0.3
2,772,894	-				-0.4
2,772,894	-				-1.6
2,772,964	+				-0.8
2,772,964	+				+0.2
2,772,965	-				-2.3
2,772,965	-				-0.7
2,772,989	+				+0.1
2,773,027	+				+0.8
2,773,027	+				+0.8
2,773,028	-				-0.6
2,773,029	+				-0.4
2,773,029	+				-0.7
2,773,029	+				+0.8
2,773,029	+				-0.1
2,773,029	+				-1.2
2,773,030	-				+0.7
2,773,030	-				-1.2
2,773,083	+				-1.2
2,773,084	-				-0.0
2,773,096	+				-1.6
2,773,096	+				-0.8
2,773,097	-				+1.1
2,773,097	-				-1.2
2,773,097	-				-2.0
2,773,097	-				-2.2
2,773,097	-				+0.2
2,773,119	+				-0.2
2,773,222	+		HGI48_RS12690	0.12	-0.2
2,773,223	-				+0.8
2,773,223	-		HGI48_RS12690	0.12	-0.2
2,773,223	-		HGI48_RS12690	0.12	+0.5
2,773,267	+		HGI48_RS12690	0.16	-0.8
2,773,267	+		HGI48_RS12690	0.16	+0.8
2,773,267	+		HGI48_RS12690	0.16	-0.7
2,773,267	+		HGI48_RS12690	0.16	-0.6
2,773,267	+		HGI48_RS12690	0.16	+1.3
2,773,268	-		HGI48_RS12690	0.16	-1.0
2,773,268	-		HGI48_RS12690	0.16	+0.1
2,773,268	-		HGI48_RS12690	0.16	-1.8
2,773,268	-		HGI48_RS12690	0.16	-1.0
2,773,268	-		HGI48_RS12690	0.16	-0.2
2,773,268	-		HGI48_RS12690	0.16	-0.6
2,773,268	-		HGI48_RS12690	0.16	+0.2
2,773,269	+		HGI48_RS12690	0.16	-0.8
2,773,269	+				-0.8
2,773,270	-				+0.8
2,773,270	-		HGI48_RS12690	0.16	-1.0
2,773,270	-		HGI48_RS12690	0.16	+0.5
2,773,270	-		HGI48_RS12690	0.16	-0.6
2,773,270	-		HGI48_RS12690	0.16	-2.0
2,773,270	-		HGI48_RS12690	0.16	-1.4
2,773,346	+		HGI48_RS12690	0.23	-1.0
2,773,366	-		HGI48_RS12690	0.24	-0.5
2,773,441	+		HGI48_RS12690	0.31	-0.4
2,773,441	+		HGI48_RS12690	0.31	-0.4
2,773,441	+		HGI48_RS12690	0.31	+0.3
2,773,441	+		HGI48_RS12690	0.31	+1.2
2,773,483	+		HGI48_RS12690	0.35	-0.6
2,773,483	+		HGI48_RS12690	0.35	-1.6
2,773,484	-		HGI48_RS12690	0.35	-1.4
2,773,484	-		HGI48_RS12690	0.35	+0.4
2,773,484	-		HGI48_RS12690	0.35	-0.2
2,773,485	+				-0.8
2,773,485	+		HGI48_RS12690	0.35	+0.0
2,773,485	+		HGI48_RS12690	0.35	-0.8
2,773,485	+		HGI48_RS12690	0.35	+0.2
2,773,485	+		HGI48_RS12690	0.35	-0.2
2,773,485	+		HGI48_RS12690	0.35	+0.3
2,773,485	+		HGI48_RS12690	0.35	+1.0
2,773,485	+		HGI48_RS12690	0.35	-1.8
2,773,485	+		HGI48_RS12690	0.35	-0.0
2,773,485	+		HGI48_RS12690	0.35	-0.2
2,773,485	+		HGI48_RS12690	0.35	-0.7
2,773,486	-		HGI48_RS12690	0.35	+3.1
2,773,486	-		HGI48_RS12690	0.35	-0.8
2,773,486	-		HGI48_RS12690	0.35	-0.6
2,773,486	-		HGI48_RS12690	0.35	+0.7
2,773,486	-		HGI48_RS12690	0.35	-0.7
2,773,492	+				+0.2
2,773,492	+		HGI48_RS12690	0.35	+0.0
2,773,493	-		HGI48_RS12690	0.36	-0.3
2,773,674	+		HGI48_RS12690	0.51	+0.3
2,773,674	+		HGI48_RS12690	0.51	-0.8
2,773,675	-		HGI48_RS12690	0.51	+1.2
2,773,675	-		HGI48_RS12690	0.51	-1.0