Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12645

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,764,759	+		HGI48_RS12640	0.44	-1.6
2,764,759	+		HGI48_RS12640	0.44	-0.0
2,764,760	-		HGI48_RS12640	0.44	-0.5
2,764,760	-		HGI48_RS12640	0.44	-0.2
2,764,802	+		HGI48_RS12640	0.48	+0.4
2,764,803	-		HGI48_RS12640	0.48	-0.0
2,764,803	-		HGI48_RS12640	0.48	+0.6
2,764,803	-		HGI48_RS12640	0.48	-0.6
2,764,823	-		HGI48_RS12640	0.50	-0.3
2,764,823	-		HGI48_RS12640	0.50	+2.7
2,764,929	+		HGI48_RS12640	0.60	-0.2
2,764,929	+		HGI48_RS12640	0.60	-0.1
2,765,040	+		HGI48_RS12640	0.70	-0.0
2,765,040	+		HGI48_RS12640	0.70	+0.4
2,765,045	+		HGI48_RS12640	0.70	-0.4
2,765,045	+		HGI48_RS12640	0.70	-0.2
2,765,045	+		HGI48_RS12640	0.70	-0.8
2,765,045	+		HGI48_RS12640	0.70	-2.0
2,765,045	+		HGI48_RS12640	0.70	-1.0
2,765,046	-		HGI48_RS12640	0.70	-1.9
2,765,046	-		HGI48_RS12640	0.70	-1.4
2,765,105	+		HGI48_RS12640	0.75	-0.6
2,765,306	+				+0.3
2,765,360	+				+1.4
2,765,360	+				+0.4
2,765,360	+				-2.0
2,765,360	+				-1.6
2,765,360	+				-1.2
2,765,360	+				+0.3
2,765,360	+				+0.1
2,765,360	+				+0.4
2,765,361	-				-0.2
2,765,361	-				-0.2
2,765,361	-				+0.6
2,765,361	-				-1.0
2,765,361	-				-0.7
2,765,361	-				-2.0
2,765,361	-				-0.2
2,765,361	-				+1.4
2,765,361	-				-1.2
2,765,362	+				+0.5
2,765,362	+				+1.0
2,765,362	+				+0.3
2,765,362	+				-1.7
2,765,362	+				-0.4
2,765,363	-				-2.8
2,765,384	+				-2.2
2,765,398	-				-1.2
2,765,420	+				+0.4
2,765,420	+				+1.4
2,765,420	+				-0.6
2,765,469	+				+1.4
2,765,504	+				-0.8
2,765,504	+				-0.3
2,765,504	+				-0.4
2,765,504	+				+0.2
2,765,564	+				-1.7
2,765,565	-				-1.8
2,765,576	-				+0.1
2,765,600	+				-1.8
2,765,601	-				-1.4
2,765,606	+				+0.8
2,765,607	-				-0.8
2,765,660	+				-1.0
2,765,660	+				-0.6
2,765,661	-				-0.4
2,765,661	-				-0.8
2,765,705	+				-0.2
2,765,705	+				-0.0
2,765,705	+				-2.0
2,765,705	+				-1.6
2,765,706	-				-0.1
2,765,808	-		HGI48_RS12645	0.18	+1.1
2,765,825	-		HGI48_RS12645	0.22	-1.2
2,766,057	+		HGI48_RS12645	0.71	+0.8
2,766,200	-				+0.3
2,766,200	-				-1.7
2,766,231	+				+0.8
2,766,232	-				+0.8
2,766,254	-				-0.8
2,766,254	-				-1.8
2,766,255	+				+0.0
2,766,255	+				+0.3
2,766,255	+				-0.2
2,766,256	-				-2.6
2,766,256	-				+0.2
2,766,256	-				-0.4
2,766,256	-				-0.2
2,766,256	-				+0.4
2,766,256	-				-1.6
2,766,290	+				-2.0
2,766,291	-				-1.6
2,766,291	-				+0.3
2,766,328	+				+0.8
2,766,328	+				-0.6
2,766,329	-				-0.2
2,766,329	-				+0.1
2,766,333	+				+2.5
2,766,352	-				-0.3
2,766,379	+				-0.5
2,766,379	+				-0.9
2,766,380	-				-0.7
2,766,382	+				+0.5
2,766,415	-				-2.0
2,766,506	+				-1.2
2,766,506	+				-0.2
2,766,506	+				+0.0
2,766,506	+				+0.1
2,766,507	-				-0.8
2,766,507	-				+1.1
2,766,508	+				-0.6
2,766,508	+				-0.0
2,766,508	+				-2.0
2,766,508	+				-1.6
2,766,508	+				+0.6
2,766,509	-				+0.8
2,766,509	-				-0.2
2,766,509	-				+0.2
2,766,509	-				+0.8
2,766,509	-				-0.8
2,766,509	-				+0.0
2,766,509	-				-0.6
2,766,509	-				-0.5
2,766,509	-				-0.8
2,766,509	-				+1.1
2,766,509	-				-0.6
2,766,510	+				-1.0
2,766,510	+				+1.3
2,766,510	+				-0.6
2,766,510	+				+0.3
2,766,510	+				-0.6
2,766,510	+				-0.6
2,766,510	+				+0.5
2,766,510	+				-0.2
2,766,510	+				+1.1
2,766,510	+				-0.4
2,766,510	+				-0.6
2,766,510	+				-1.0
2,766,510	+				-1.8
2,766,510	+				-1.0
2,766,510	+				+2.8
2,766,510	+				-0.2
2,766,510	+				-1.7
2,766,510	+				-0.2
2,766,510	+				+0.8
2,766,511	-				-1.2
2,766,511	-				+1.3
2,766,511	-				-2.0
2,766,511	-				+0.1
2,766,511	-				+1.3
2,766,511	-				-0.8
2,766,511	-				-0.0
2,766,511	-				+0.8
2,766,511	-				-0.4
2,766,511	-				-0.5
2,766,512	+				-2.6
2,766,512	+				-0.8
2,766,512	+				-0.5
2,766,513	-				-1.1
2,766,513	-				+0.4
2,766,513	-				+0.2
2,766,513	-				-0.6
2,766,513	-				+0.4
2,766,513	-				-1.6
2,766,519	+				-0.0
2,766,521	+				-0.1
2,766,521	+				-0.2
2,766,522	-				-0.3
2,766,548	-				+1.9
2,766,641	+				+0.3
2,766,641	+				-1.2
2,766,641	+				+0.3
2,766,641	+				-0.8
2,766,642	-				+1.1
2,766,642	-				+0.8
2,766,642	-				-0.0
2,766,642	-				-0.8
2,766,642	-				+0.1
2,766,642	-				+1.2
2,766,642	-				-0.7
2,766,642	-				-1.8
2,766,642	-				+0.4
2,766,645	+				-0.5
2,766,645	+				+0.3
2,766,645	+				-1.4
2,766,645	+				+0.3
2,766,645	+				-0.7
2,766,646	-				-1.8
2,766,646	-				-0.6
2,766,646	-				-1.0
2,766,646	-				+0.0
2,766,646	-				-1.0
2,766,646	-				-0.5
2,766,649	+				-0.6
2,766,649	+				-0.2
2,766,650	-				+0.2
2,766,650	-				-1.4
2,766,650	-				-0.4
2,766,650	-				+1.5
2,766,650	-				-0.2
2,766,650	-				+0.4
2,766,650	-				+1.5
2,766,650	-				-0.2
2,766,696	+				-1.8
2,766,705	+				+0.2
2,766,706	-				-0.5
2,766,706	-				-0.0
2,766,706	-				+0.1
2,766,707	+				-0.8
2,766,707	+				+0.4
2,766,707	+				-1.8
2,766,707	+				-0.1
2,766,707	+				+0.8
2,766,707	+				-0.2
2,766,707	+				-1.5
2,766,707	+				-0.5
2,766,707	+				-0.0
2,766,707	+				+0.8
2,766,707	+				-0.1
2,766,707	+				-1.8
2,766,708	-				+0.3
2,766,708	-				-1.1
2,766,708	-				-1.4
2,766,708	-				+1.3
2,766,708	-				+0.0
2,766,708	-				-0.6
2,766,708	-				+0.4
2,766,708	-				+0.0
2,766,708	-				+0.4
2,766,708	-				-0.6
2,766,708	-				-0.4
2,766,708	-				-0.2
2,766,708	-				-0.8
2,766,708	-				+0.1
2,766,745	+				-0.6
2,766,758	+				-2.8
2,766,759	-				-0.7
2,766,763	-				+0.3
2,766,779	+				+1.8
2,766,779	+				+0.1
2,766,779	+				-0.2
2,766,780	-				+0.5
2,766,780	-				-0.1
2,766,780	-				-0.3
2,766,780	-				+0.8
2,766,811	+		HGI48_RS12650	0.11	-1.9
2,766,811	+		HGI48_RS12650	0.11	-0.2
2,766,811	+		HGI48_RS12650	0.11	+0.4
2,766,811	+		HGI48_RS12650	0.11	-1.4
2,766,811	+		HGI48_RS12650	0.11	-0.2
2,766,812	-		HGI48_RS12650	0.12	+0.8
2,766,812	-		HGI48_RS12650	0.12	+0.8
2,766,814	+		HGI48_RS12650	0.12	-0.7
2,766,847	+		HGI48_RS12650	0.20	+0.1
2,766,847	+		HGI48_RS12650	0.20	+0.3
2,766,847	+				+2.3
2,766,847	+				+0.8
2,766,848	-				+0.8
2,766,854	+		HGI48_RS12650	0.21	+1.6
2,766,854	+		HGI48_RS12650	0.21	-1.4
2,766,855	-		HGI48_RS12650	0.21	+1.0
2,766,855	-				-0.2
2,766,857	+		HGI48_RS12650	0.22	+0.2
2,766,881	-		HGI48_RS12650	0.27	+1.1
2,766,905	-		HGI48_RS12650	0.33	+0.4
2,766,931	+		HGI48_RS12650	0.39	-1.0
2,766,932	-		HGI48_RS12650	0.39	+0.9
2,766,932	-		HGI48_RS12650	0.39	+0.3
2,766,932	-		HGI48_RS12650	0.39	+0.8
2,766,971	-		HGI48_RS12650	0.48	+0.1
2,766,974	+		HGI48_RS12650	0.49	-0.4
2,766,974	+		HGI48_RS12650	0.49	-0.2
2,766,974	+		HGI48_RS12650	0.49	+0.5
2,766,975	-		HGI48_RS12650	0.49	-2.0
2,766,975	-		HGI48_RS12650	0.49	+0.1
2,766,975	-		HGI48_RS12650	0.49	+0.8
2,767,003	+		HGI48_RS12650	0.55	+0.5
2,767,003	+		HGI48_RS12650	0.55	-0.6
2,767,003	+		HGI48_RS12650	0.55	-0.5
2,767,003	+		HGI48_RS12650	0.55	-0.1
2,767,003	+		HGI48_RS12650	0.55	-0.6
2,767,003	+		HGI48_RS12650	0.55	+0.0
2,767,004	-		HGI48_RS12650	0.55	+1.0
2,767,004	-		HGI48_RS12650	0.55	+0.3
2,767,004	-		HGI48_RS12650	0.55	+0.3
2,767,004	-		HGI48_RS12650	0.55	+1.3
2,767,081	+		HGI48_RS12650	0.73	+0.1
2,767,081	+		HGI48_RS12650	0.73	+0.9
2,767,081	+				+0.8
2,767,081	+		HGI48_RS12650	0.73	+0.5
2,767,081	+		HGI48_RS12650	0.73	+1.6
2,767,081	+		HGI48_RS12650	0.73	-0.5
2,767,082	-				+1.2
2,767,082	-		HGI48_RS12650	0.73	+0.4
2,767,084	+		HGI48_RS12650	0.74	-0.2
2,767,084	+		HGI48_RS12650	0.74	+0.8
2,767,084	+		HGI48_RS12650	0.74	-0.1
2,767,085	-		HGI48_RS12650	0.74	+0.5
2,767,154	+		HGI48_RS12650	0.90	+1.0
2,767,154	+		HGI48_RS12650	0.90	+0.3
2,767,154	+		HGI48_RS12650	0.90	-0.0
2,767,172	+				+0.8
2,767,184	+				+1.3