Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11065

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,398,417	+		HGI48_RS11055	0.65	-1.9
2,398,417	+		HGI48_RS11055	0.65	-2.8
2,398,417	+		HGI48_RS11055	0.65	+0.2
2,398,418	-				-0.4
2,398,418	-		HGI48_RS11055	0.65	-0.4
2,398,418	-		HGI48_RS11055	0.65	-0.2
2,398,418	-		HGI48_RS11055	0.65	-2.5
2,398,418	-				+0.1
2,398,418	-		HGI48_RS11055	0.65	-0.2
2,398,422	+		HGI48_RS11055	0.65	+0.2
2,398,423	-		HGI48_RS11055	0.66	-0.6
2,398,423	-		HGI48_RS11055	0.66	-1.7
2,398,453	+		HGI48_RS11055	0.69	-0.6
2,398,454	-		HGI48_RS11055	0.69	-0.1
2,398,637	-				-0.8
2,398,640	+				-0.9
2,398,665	+				-1.4
2,398,680	+				-0.9
2,398,681	-				+1.4
2,398,800	-		HGI48_RS11060	0.17	+0.2
2,398,882	+		HGI48_RS11060	0.30	-1.4
2,398,939	+		HGI48_RS11060	0.39	-1.9
2,398,940	-		HGI48_RS11060	0.39	-1.9
2,399,008	-		HGI48_RS11060	0.50	+0.2
2,399,008	-				-0.9
2,399,008	-		HGI48_RS11060	0.50	+0.3
2,399,057	+		HGI48_RS11060	0.58	+0.2
2,399,057	+				+1.1
2,399,057	+		HGI48_RS11060	0.58	-0.2
2,399,057	+		HGI48_RS11060	0.58	-0.4
2,399,057	+		HGI48_RS11060	0.58	+0.2
2,399,057	+		HGI48_RS11060	0.58	-0.4
2,399,058	-		HGI48_RS11060	0.58	-0.3
2,399,058	-		HGI48_RS11060	0.58	+0.6
2,399,058	-		HGI48_RS11060	0.58	-1.7
2,399,058	-		HGI48_RS11060	0.58	+0.8
2,399,058	-		HGI48_RS11060	0.58	-1.4
2,399,163	-		HGI48_RS11060	0.75	-0.7
2,399,217	-		HGI48_RS11060	0.84	-0.9
2,399,233	+				+0.6
2,399,234	-		HGI48_RS11060	0.86	+0.3
2,399,316	-				-1.7
2,399,316	-				-0.9
2,399,364	+				+1.2
2,399,365	-				-0.4
2,399,366	+				+0.6
2,399,366	+				-1.7
2,399,366	+				-0.2
2,399,367	-				-0.9
2,399,367	-				+1.2
2,399,367	-				-0.4
2,399,367	-				-0.1
2,399,367	-				-0.0
2,399,417	+				-1.2
2,399,418	-				-1.9
2,399,513	+				-1.2
2,399,513	+				-2.0
2,399,514	-				-0.2
2,399,514	-				-3.0
2,399,514	-				-2.2
2,399,592	+		HGI48_RS11065	0.13	-0.3
2,399,635	+		HGI48_RS11065	0.16	-0.4
2,399,636	-		HGI48_RS11065	0.16	-0.8
2,399,636	-				+1.2
2,399,818	+		HGI48_RS11065	0.29	+0.1
2,399,819	-		HGI48_RS11065	0.29	-1.4
2,399,819	-		HGI48_RS11065	0.29	+0.1
2,399,819	-		HGI48_RS11065	0.29	-0.3
2,399,819	-		HGI48_RS11065	0.29	-1.7
2,399,843	+		HGI48_RS11065	0.31	-2.2
2,399,843	+		HGI48_RS11065	0.31	+0.9
2,399,844	-		HGI48_RS11065	0.31	-0.6
2,399,847	+		HGI48_RS11065	0.31	+0.1
2,399,847	+		HGI48_RS11065	0.31	-1.7
2,400,017	+		HGI48_RS11065	0.44	-0.4
2,400,017	+		HGI48_RS11065	0.44	+0.6
2,400,017	+		HGI48_RS11065	0.44	-0.4
2,400,018	-		HGI48_RS11065	0.44	+1.3
2,400,018	-				+0.1
2,400,018	-				+0.6
2,400,018	-				-0.9
2,400,018	-		HGI48_RS11065	0.44	-0.7
2,400,018	-		HGI48_RS11065	0.44	-0.4
2,400,018	-				+1.1
2,400,018	-		HGI48_RS11065	0.44	-1.8
2,400,018	-				+0.6
2,400,043	-		HGI48_RS11065	0.46	-0.5
2,400,128	+		HGI48_RS11065	0.52	-1.2
2,400,129	-				+0.6
2,400,129	-		HGI48_RS11065	0.52	-0.7
2,400,129	-		HGI48_RS11065	0.52	+1.5
2,400,198	+		HGI48_RS11065	0.57	-0.2
2,400,198	+		HGI48_RS11065	0.57	-2.5
2,400,198	+				+1.6
2,400,199	-		HGI48_RS11065	0.57	+0.1
2,400,199	-		HGI48_RS11065	0.57	-0.4
2,400,199	-				+0.6
2,400,199	-		HGI48_RS11065	0.57	+1.7
2,400,268	+		HGI48_RS11065	0.62	-0.9
2,400,364	+		HGI48_RS11065	0.69	-0.9
2,400,364	+		HGI48_RS11065	0.69	-1.5
2,400,414	+		HGI48_RS11065	0.73	-1.9
2,400,414	+		HGI48_RS11065	0.73	-0.6
2,400,414	+		HGI48_RS11065	0.73	-1.4
2,400,415	-				-0.4
2,400,415	-				-0.9
2,400,415	-		HGI48_RS11065	0.73	-1.7
2,400,415	-		HGI48_RS11065	0.73	-0.6
2,400,415	-		HGI48_RS11065	0.73	+1.4
2,400,415	-		HGI48_RS11065	0.73	+0.6
2,400,498	+		HGI48_RS11065	0.79	+0.2
2,400,499	-		HGI48_RS11065	0.79	-0.9
2,400,500	+		HGI48_RS11065	0.79	-0.7
2,400,500	+				+0.1
2,400,501	-		HGI48_RS11065	0.79	-0.3
2,400,501	-		HGI48_RS11065	0.79	-0.0
2,400,501	-				+1.1
2,400,530	-				-0.9
2,400,605	-				+2.1
2,400,681	+				+0.3
2,400,722	+				-0.9
2,400,748	+				+0.2
2,400,749	-				-1.9
2,400,810	+				+0.1
2,400,811	-				-0.1
2,400,860	-				-0.1
2,400,883	+				-0.3
2,400,902	-				-1.9
2,400,970	-				+1.4
2,401,033	+				-0.1
2,401,033	+				-0.1
2,401,033	+				+1.0
2,401,154	-				+1.6
2,401,184	+		HGI48_RS11070	0.27	-0.2
2,401,185	-		HGI48_RS11070	0.27	+0.1
2,401,187	-		HGI48_RS11070	0.27	+1.0
2,401,253	+		HGI48_RS11070	0.39	+1.1
2,401,253	+		HGI48_RS11070	0.39	-0.6
2,401,253	+		HGI48_RS11070	0.39	-0.8
2,401,253	+		HGI48_RS11070	0.39	-1.4
2,401,253	+		HGI48_RS11070	0.39	-2.2
2,401,253	+		HGI48_RS11070	0.39	-0.1
2,401,253	+				+0.1
2,401,254	-		HGI48_RS11070	0.39	-0.1
2,401,254	-		HGI48_RS11070	0.39	-0.5
2,401,254	-		HGI48_RS11070	0.39	-1.5
2,401,254	-		HGI48_RS11070	0.39	-0.4
2,401,254	-		HGI48_RS11070	0.39	-0.4
2,401,254	-		HGI48_RS11070	0.39	-0.7
2,401,254	-		HGI48_RS11070	0.39	-0.3
2,401,254	-		HGI48_RS11070	0.39	+0.2
2,401,254	-		HGI48_RS11070	0.39	-2.5
2,401,254	-		HGI48_RS11070	0.39	-0.4
2,401,254	-		HGI48_RS11070	0.39	+0.6
2,401,259	+		HGI48_RS11070	0.40	-0.7
2,401,259	+		HGI48_RS11070	0.40	-0.4
2,401,347	-		HGI48_RS11070	0.56	+0.6
2,401,398	-		HGI48_RS11070	0.65	-1.4
2,401,400	+		HGI48_RS11070	0.66	-1.4
2,401,401	-		HGI48_RS11070	0.66	-0.0
2,401,401	-		HGI48_RS11070	0.66	-0.0
2,401,401	-		HGI48_RS11070	0.66	-0.8
2,401,430	+		HGI48_RS11070	0.71	+0.5
2,401,430	+		HGI48_RS11070	0.71	-0.4
2,401,431	-		HGI48_RS11070	0.71	+0.6
2,401,448	+				+0.1
2,401,554	+				-0.9
2,401,711	+		HGI48_RS11075	0.25	-0.6
2,401,711	+				+1.4
2,401,711	+		HGI48_RS11075	0.25	-0.2
2,401,712	-		HGI48_RS11075	0.25	-1.1
2,401,712	-		HGI48_RS11075	0.25	-1.5
2,401,786	+				+0.6
2,401,787	-		HGI48_RS11075	0.38	-1.7