Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,294,346	-		HGI48_RS10620	0.75	+1.4
2,294,660	-				-0.8
2,294,662	+				-0.8
2,294,669	-				+1.1
2,294,690	+				-1.7
2,294,691	-				-2.7
2,294,691	-				-1.9
2,294,691	-				-1.8
2,294,691	-				+0.9
2,294,737	-				-0.1
2,294,737	-				-2.3
2,294,737	-				+0.9
2,294,739	+				-2.1
2,294,739	+				-1.1
2,294,747	+				+0.5
2,294,756	+				-1.7
2,294,756	+				+0.7
2,294,757	-				-1.1
2,294,757	-				+0.2
2,294,765	+				-1.7
2,294,765	+				+0.8
2,294,766	-				-0.1
2,294,766	-				-2.3
2,294,766	-				-1.9
2,294,766	-				-0.9
2,294,773	-				-2.3
2,294,773	-				+0.3
2,294,773	-				+0.4
2,294,775	-				-2.3
2,294,855	+		HGI48_RS10625	0.18	-1.3
2,294,879	+		HGI48_RS10625	0.24	-1.7
2,294,879	+		HGI48_RS10625	0.24	-0.0
2,294,880	-		HGI48_RS10625	0.24	-0.3
2,294,900	+		HGI48_RS10625	0.28	-1.2
2,294,900	+		HGI48_RS10625	0.28	-0.9
2,294,960	-				-0.3
2,295,008	+		HGI48_RS10625	0.51	-2.8
2,295,015	+		HGI48_RS10625	0.53	-1.7
2,295,083	+		HGI48_RS10625	0.68	-0.1
2,295,083	+		HGI48_RS10625	0.68	-0.1
2,295,084	-		HGI48_RS10625	0.68	+0.5
2,295,084	-		HGI48_RS10625	0.68	+0.6
2,295,084	-		HGI48_RS10625	0.68	-1.7
2,295,084	-		HGI48_RS10625	0.68	+0.0
2,295,109	-				+0.7
2,295,109	-		HGI48_RS10625	0.73	-0.4
2,295,109	-		HGI48_RS10625	0.73	-2.1
2,295,110	+		HGI48_RS10625	0.73	-0.3
2,295,111	-		HGI48_RS10625	0.74	+0.2
2,295,152	+		HGI48_RS10625	0.82	-0.8
2,295,152	+		HGI48_RS10625	0.82	-0.8
2,295,152	+				-0.3
2,295,153	-		HGI48_RS10625	0.83	+0.9
2,295,153	-		HGI48_RS10625	0.83	+0.5
2,295,156	+		HGI48_RS10625	0.83	+0.2
2,295,156	+		HGI48_RS10625	0.83	-0.9
2,295,156	+		HGI48_RS10625	0.83	-1.7
2,295,156	+		HGI48_RS10625	0.83	+0.0
2,295,156	+		HGI48_RS10625	0.83	-0.7
2,295,156	+		HGI48_RS10625	0.83	-0.8
2,295,157	-		HGI48_RS10625	0.83	-0.5
2,295,157	-		HGI48_RS10625	0.83	-2.5
2,295,157	-		HGI48_RS10625	0.83	-0.3
2,295,157	-		HGI48_RS10625	0.83	-2.3
2,295,158	+		HGI48_RS10625	0.84	-0.2
2,295,158	+		HGI48_RS10625	0.84	+0.2
2,295,159	-		HGI48_RS10625	0.84	-1.3
2,295,159	-		HGI48_RS10625	0.84	-0.5
2,295,159	-		HGI48_RS10625	0.84	-0.1
2,295,162	+		HGI48_RS10625	0.85	+0.2
2,295,162	+		HGI48_RS10625	0.85	-1.9
2,295,162	+		HGI48_RS10625	0.85	-0.5
2,295,162	+				+2.8
2,295,162	+		HGI48_RS10625	0.85	+0.2
2,295,163	-		HGI48_RS10625	0.85	-0.7
2,295,163	-		HGI48_RS10625	0.85	-1.3
2,295,163	-		HGI48_RS10625	0.85	-0.6
2,295,164	+		HGI48_RS10625	0.85	-0.2
2,295,164	+		HGI48_RS10625	0.85	-0.1
2,295,165	-		HGI48_RS10625	0.85	-0.9
2,295,165	-		HGI48_RS10625	0.85	-0.8
2,295,168	+		HGI48_RS10625	0.86	-0.5
2,295,180	-				+1.7
2,295,243	+				-1.7
2,295,243	+				-0.6
2,295,257	-				-0.7
2,295,260	-				-0.7
2,295,273	+				-0.3
2,295,428	-				-0.9
2,295,462	-		HGI48_RS10630	0.13	+0.1
2,295,469	-		HGI48_RS10630	0.14	+0.3
2,295,469	-		HGI48_RS10630	0.14	+0.5
2,295,575	+		HGI48_RS10630	0.24	+0.7
2,295,576	-		HGI48_RS10630	0.24	-2.1
2,295,596	-		HGI48_RS10630	0.26	+0.1
2,295,616	+		HGI48_RS10630	0.28	+1.5
2,295,616	+		HGI48_RS10630	0.28	-0.7
2,295,639	+		HGI48_RS10630	0.30	-0.3
2,295,639	+		HGI48_RS10630	0.30	+0.8
2,295,640	-		HGI48_RS10630	0.31	+1.2
2,295,640	-		HGI48_RS10630	0.31	-0.0
2,295,640	-		HGI48_RS10630	0.31	-2.1
2,295,640	-		HGI48_RS10630	0.31	-0.8
2,295,706	+		HGI48_RS10630	0.37	-1.7
2,295,760	+		HGI48_RS10630	0.42	-0.7
2,295,803	+		HGI48_RS10630	0.47	+0.3
2,295,803	+		HGI48_RS10630	0.47	-0.6
2,295,803	+		HGI48_RS10630	0.47	-1.7
2,295,804	-		HGI48_RS10630	0.47	+1.0
2,295,804	-		HGI48_RS10630	0.47	-1.8
2,295,925	+		HGI48_RS10630	0.59	+0.3
2,295,926	-		HGI48_RS10630	0.59	-1.7
2,295,956	-		HGI48_RS10630	0.62	-1.9
2,296,038	+		HGI48_RS10630	0.70	+0.4
2,296,038	+		HGI48_RS10630	0.70	-0.7
2,296,038	+				+1.1
2,296,038	+		HGI48_RS10630	0.70	-0.7
2,296,038	+		HGI48_RS10630	0.70	-1.3
2,296,038	+		HGI48_RS10630	0.70	-1.8
2,296,038	+		HGI48_RS10630	0.70	+0.7
2,296,039	-		HGI48_RS10630	0.70	-0.7
2,296,039	-		HGI48_RS10630	0.70	-1.3
2,296,039	-		HGI48_RS10630	0.70	+0.3
2,296,039	-				+1.4
2,296,039	-		HGI48_RS10630	0.70	-1.3
2,296,039	-				+0.1
2,296,039	-		HGI48_RS10630	0.70	+0.4
2,296,039	-		HGI48_RS10630	0.70	-0.6
2,296,039	-				+0.7
2,296,082	+		HGI48_RS10630	0.74	+0.2
2,296,082	+		HGI48_RS10630	0.74	-0.7
2,296,083	-		HGI48_RS10630	0.74	-0.7
2,296,218	-		HGI48_RS10630	0.87	-0.9
2,296,218	-		HGI48_RS10630	0.87	-0.1
2,296,218	-		HGI48_RS10630	0.87	-0.6
2,296,252	+				-0.5
2,296,253	-				-0.9
2,296,294	+				-0.3
2,296,456	+				-1.1
2,296,464	+				-2.9
2,296,471	-				-2.0
2,296,471	-				-0.3
2,296,474	+				+1.5
2,296,475	-				+0.7
2,296,482	+				+0.4
2,296,489	-				-1.3
2,296,519	+				-0.3
2,296,520	-				-0.6
2,296,570	+				-0.7
2,296,570	+				-1.7
2,296,571	-				+0.7
2,296,571	-				+0.8
2,296,572	+				+1.2
2,296,572	+				-0.3
2,296,573	-				-0.2
2,296,573	-				-0.1
2,296,573	-				+0.9
2,296,594	+				-1.3
2,296,594	+				-0.1
2,296,595	-				+0.5
2,296,606	+				-1.5
2,296,607	-				-2.5
2,296,607	-				-0.9
2,296,607	-				-1.9
2,296,611	-				-0.9
2,296,611	-				-0.1
2,296,627	-				+0.7
2,296,659	+				-0.5
2,296,659	+				-2.4
2,296,660	-				+0.3
2,296,660	-				-2.3
2,296,660	-				-1.1
2,296,660	-				-1.1
2,296,684	-				-1.0
2,296,723	+		HGI48_RS10635	0.12	+0.1
2,296,723	+		HGI48_RS10635	0.12	-0.9
2,296,723	+		HGI48_RS10635	0.12	-0.9
2,296,727	+				-0.9
2,296,727	+				+1.7
2,296,727	+		HGI48_RS10635	0.13	+0.5
2,296,728	-		HGI48_RS10635	0.13	+2.6
2,296,728	-		HGI48_RS10635	0.13	-0.7
2,296,745	-				-0.9
2,296,745	-		HGI48_RS10635	0.14	-0.3
2,296,745	-		HGI48_RS10635	0.14	-0.1
2,296,797	+		HGI48_RS10635	0.20	-1.1
2,296,798	-		HGI48_RS10635	0.20	-0.1
2,296,798	-		HGI48_RS10635	0.20	-0.2
2,296,799	+		HGI48_RS10635	0.20	-0.3
2,296,800	-		HGI48_RS10635	0.20	+0.9
2,296,800	-				+0.7
2,296,837	+		HGI48_RS10635	0.24	+0.3
2,296,910	-		HGI48_RS10635	0.32	-0.0
2,296,910	-		HGI48_RS10635	0.32	-0.5
2,296,996	-		HGI48_RS10635	0.41	+0.1
2,296,996	-		HGI48_RS10635	0.41	+0.5
2,296,996	-		HGI48_RS10635	0.41	-1.3
2,297,055	+		HGI48_RS10635	0.47	-1.1
2,297,055	+		HGI48_RS10635	0.47	-0.1
2,297,055	+		HGI48_RS10635	0.47	-2.5
2,297,056	-		HGI48_RS10635	0.47	+0.3
2,297,056	-		HGI48_RS10635	0.47	-1.7
2,297,056	-		HGI48_RS10635	0.47	+0.8
2,297,090	-		HGI48_RS10635	0.51	-1.9
2,297,219	-		HGI48_RS10635	0.65	+0.2
2,297,230	+				+0.1
2,297,249	+		HGI48_RS10635	0.68	+0.3
2,297,250	-		HGI48_RS10635	0.68	-0.1
2,297,272	+		HGI48_RS10635	0.70	-0.1
2,297,272	+		HGI48_RS10635	0.70	-0.7
2,297,273	-		HGI48_RS10635	0.70	-1.5
2,297,306	-		HGI48_RS10635	0.74	-1.9
2,297,306	-		HGI48_RS10635	0.74	-0.3
2,297,306	-		HGI48_RS10635	0.74	+0.4
2,297,306	-		HGI48_RS10635	0.74	-1.3
2,297,306	-		HGI48_RS10635	0.74	+0.3