Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06975

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,478,904	-		HGI48_RS06965	0.53	-0.3
1,478,904	-		HGI48_RS06965	0.53	-1.7
1,478,910	+		HGI48_RS06965	0.55	-1.3
1,479,030	+		HGI48_RS06965	0.85	+0.7
1,479,031	-		HGI48_RS06965	0.85	-1.3
1,479,034	+		HGI48_RS06965	0.86	-0.4
1,479,034	+		HGI48_RS06965	0.86	+1.5
1,479,034	+		HGI48_RS06965	0.86	+0.2
1,479,034	+		HGI48_RS06965	0.86	+0.3
1,479,035	-		HGI48_RS06965	0.86	+0.9
1,479,035	-		HGI48_RS06965	0.86	-1.1
1,479,035	-		HGI48_RS06965	0.86	-0.3
1,479,035	-		HGI48_RS06965	0.86	+0.1
1,479,069	-				+1.4
1,479,089	+				-0.9
1,479,090	-				-0.1
1,479,090	-				-1.0
1,479,090	-				-1.4
1,479,090	-				-0.7
1,479,093	-				-0.7
1,479,181	+				-0.9
1,479,182	-		HGI48_RS06970	0.10	-1.7
1,479,192	+		HGI48_RS06970	0.15	-0.9
1,479,215	+				+0.3
1,479,215	+		HGI48_RS06970	0.25	+0.6
1,479,215	+		HGI48_RS06970	0.25	-1.1
1,479,215	+		HGI48_RS06970	0.25	-1.7
1,479,215	+		HGI48_RS06970	0.25	-0.6
1,479,215	+		HGI48_RS06970	0.25	-0.6
1,479,216	-		HGI48_RS06970	0.26	-0.5
1,479,216	-		HGI48_RS06970	0.26	-0.3
1,479,216	-		HGI48_RS06970	0.26	+0.1
1,479,289	+		HGI48_RS06970	0.60	-0.1
1,479,289	+		HGI48_RS06970	0.60	-0.1
1,479,289	+		HGI48_RS06970	0.60	+0.3
1,479,290	-		HGI48_RS06970	0.60	+0.3
1,479,290	-		HGI48_RS06970	0.60	-0.7
1,479,291	+		HGI48_RS06970	0.61	+0.1
1,479,291	+		HGI48_RS06970	0.61	-0.3
1,479,291	+		HGI48_RS06970	0.61	+1.7
1,479,291	+		HGI48_RS06970	0.61	+0.9
1,479,291	+		HGI48_RS06970	0.61	+0.0
1,479,291	+		HGI48_RS06970	0.61	+0.0
1,479,291	+		HGI48_RS06970	0.61	-0.1
1,479,292	-		HGI48_RS06970	0.61	+1.1
1,479,292	-		HGI48_RS06970	0.61	-0.7
1,479,292	-		HGI48_RS06970	0.61	+0.1
1,479,292	-		HGI48_RS06970	0.61	-0.7
1,479,320	+		HGI48_RS06970	0.74	-0.4
1,479,320	+		HGI48_RS06970	0.74	-0.2
1,479,369	-				-0.4
1,479,454	-				+0.0
1,479,484	+				-1.1
1,479,484	+				-1.4
1,479,485	-				-3.2
1,479,485	-				-0.4
1,479,551	+				-0.2
1,479,613	-				+0.5
1,479,678	+				-0.4
1,479,678	+				+0.5
1,479,678	+				-0.5
1,479,679	-				-2.1
1,479,679	-				-1.9
1,479,679	-				+1.3
1,479,682	+				-0.1
1,479,693	+				-0.8
1,479,694	-				-1.7
1,479,694	-				-0.6
1,479,718	+				+0.1
1,479,718	+				+0.2
1,479,731	+				-0.2
1,479,731	+				-0.6
1,479,731	+				+0.4
1,479,731	+				+0.1
1,479,731	+				+0.1
1,479,731	+				-1.6
1,479,731	+				-1.4
1,479,731	+				-0.4
1,479,731	+				+0.3
1,479,731	+				-0.9
1,479,732	-				-0.6
1,479,732	-				-1.1
1,479,732	-				-1.4
1,479,732	-				-1.1
1,479,733	+				-2.4
1,479,734	-				-2.3
1,479,734	-				-0.9
1,479,734	-				+0.6
1,479,734	-				-0.1
1,479,734	-				-0.1
1,479,734	-				-1.7
1,479,734	-				+0.3
1,479,734	-				+1.0
1,479,734	-				+0.3
1,479,734	-				-0.1
1,479,740	+				+1.2
1,479,740	+				+0.4
1,479,848	-				-0.1
1,479,863	+				-2.1
1,479,863	+				-0.4
1,479,864	-				-1.1
1,479,864	-				-0.9
1,479,874	+				+0.3
1,479,875	-				+0.1
1,479,920	-				-0.9
1,479,940	+				-0.8
1,479,940	+				-0.1
1,479,941	-				+0.0
1,479,951	+				-0.7
1,479,951	+				-0.1
1,479,952	-				-0.5
1,479,952	-				+0.2
1,479,952	-				-0.5
1,479,952	-				+0.9
1,479,952	-				-0.7
1,479,952	-				-0.4
1,479,973	-				+0.4
1,480,062	+		HGI48_RS06975	0.17	-1.2
1,480,062	+		HGI48_RS06975	0.17	+0.3
1,480,062	+		HGI48_RS06975	0.17	-0.1
1,480,063	-				+0.9
1,480,063	-		HGI48_RS06975	0.17	-1.4
1,480,112	+		HGI48_RS06975	0.22	-1.6
1,480,140	+		HGI48_RS06975	0.24	-0.4
1,480,140	+		HGI48_RS06975	0.24	-0.3
1,480,141	-		HGI48_RS06975	0.24	-1.9
1,480,141	-		HGI48_RS06975	0.24	+0.9
1,480,141	-		HGI48_RS06975	0.24	+0.1
1,480,187	+		HGI48_RS06975	0.29	+0.5
1,480,187	+		HGI48_RS06975	0.29	-2.1
1,480,187	+		HGI48_RS06975	0.29	-0.4
1,480,188	-		HGI48_RS06975	0.29	+0.6
1,480,188	-		HGI48_RS06975	0.29	-0.7
1,480,188	-		HGI48_RS06975	0.29	-0.5
1,480,189	+		HGI48_RS06975	0.29	-0.1
1,480,239	+		HGI48_RS06975	0.33	-0.1
1,480,239	+		HGI48_RS06975	0.33	-0.6
1,480,239	+		HGI48_RS06975	0.33	-1.1
1,480,240	-		HGI48_RS06975	0.34	-0.6
1,480,491	+		HGI48_RS06975	0.57	-1.7
1,480,492	-		HGI48_RS06975	0.57	-0.2
1,480,586	+		HGI48_RS06975	0.66	-0.3
1,480,586	+				+0.3
1,480,593	+		HGI48_RS06975	0.67	+0.1
1,480,593	+		HGI48_RS06975	0.67	-1.1
1,480,640	+		HGI48_RS06975	0.71	-0.9
1,480,655	+		HGI48_RS06975	0.72	+0.2
1,480,655	+		HGI48_RS06975	0.72	-0.1
1,480,656	-				+0.3
1,480,901	+				-0.3
1,480,901	+				+0.4
1,480,994	+				-0.1
1,481,000	-				-1.4
1,481,067	-				+0.6
1,481,068	+				-0.4
1,481,068	+				-2.4
1,481,068	+				-1.1
1,481,068	+				+0.9
1,481,068	+				-0.1
1,481,068	+				-0.7
1,481,068	+				+0.9
1,481,068	+				+0.5
1,481,068	+				-0.9
1,481,068	+				-0.1
1,481,069	-				-0.7
1,481,069	-				+0.5
1,481,069	-				+0.1
1,481,069	-				-1.9
1,481,069	-				+0.5
1,481,069	-				-0.1
1,481,069	-				-0.5
1,481,069	-				-0.5
1,481,072	+				-0.9
1,481,072	+				-1.3
1,481,072	+				+0.6
1,481,103	-				-0.9
1,481,111	-				-0.3
1,481,140	+				-1.7
1,481,140	+				-0.2
1,481,141	-				-1.9
1,481,174	+				-1.1
1,481,175	-				-0.7
1,481,175	-				+0.3
1,481,175	-				-0.6
1,481,176	+				-0.7
1,481,177	-				+0.9
1,481,177	-				-0.4
1,481,182	+				+0.3
1,481,185	-				+2.8
1,481,185	-				+0.5
1,481,185	-				-0.7
1,481,229	+				+0.0
1,481,230	-				-1.4
1,481,356	+		HGI48_RS06980	0.22	-0.6
1,481,364	+		HGI48_RS06980	0.23	-0.3
1,481,365	-		HGI48_RS06980	0.23	-1.0
1,481,466	+		HGI48_RS06980	0.37	-1.8
1,481,466	+		HGI48_RS06980	0.37	-2.1
1,481,467	-				+0.9
1,481,467	-				-0.7
1,481,471	+		HGI48_RS06980	0.38	-1.9
1,481,471	+		HGI48_RS06980	0.38	-1.7
1,481,471	+		HGI48_RS06980	0.38	+0.6
1,481,472	-		HGI48_RS06980	0.38	-1.9
1,481,472	-		HGI48_RS06980	0.38	-0.4
1,481,472	-		HGI48_RS06980	0.38	-0.8
1,481,475	+		HGI48_RS06980	0.38	+0.5
1,481,475	+		HGI48_RS06980	0.38	-0.4
1,481,475	+		HGI48_RS06980	0.38	-2.6
1,481,475	+		HGI48_RS06980	0.38	-0.1
1,481,475	+		HGI48_RS06980	0.38	-0.6
1,481,475	+		HGI48_RS06980	0.38	-0.4
1,481,475	+		HGI48_RS06980	0.38	-0.1
1,481,476	-		HGI48_RS06980	0.38	+0.9
1,481,476	-		HGI48_RS06980	0.38	+0.5
1,481,476	-		HGI48_RS06980	0.38	-1.4
1,481,476	-		HGI48_RS06980	0.38	-1.1
1,481,612	+		HGI48_RS06980	0.56	-1.3
1,481,613	-		HGI48_RS06980	0.57	+1.6
1,481,714	+				+0.3
1,481,714	+		HGI48_RS06980	0.70	-0.7
1,481,715	-		HGI48_RS06980	0.70	-2.1
1,481,715	-		HGI48_RS06980	0.70	-0.7
1,481,715	-		HGI48_RS06980	0.70	-1.7
1,481,722	+		HGI48_RS06980	0.71	-1.1
1,481,727	-		HGI48_RS06980	0.72	-0.6
1,481,736	-		HGI48_RS06980	0.73	-0.1
1,481,736	-		HGI48_RS06980	0.73	-0.9
1,481,854	+		HGI48_RS06980	0.89	+0.2
1,481,855	-		HGI48_RS06980	0.89	-0.4
1,481,924	-				-1.1
1,481,943	+				-0.8