Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06915

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,465,555	+		HGI48_RS06910	0.19	-1.4
1,465,722	-				-0.7
1,466,040	+		HGI48_RS06910	0.63	-0.0
1,466,040	+		HGI48_RS06910	0.63	-0.4
1,466,040	+		HGI48_RS06910	0.63	-0.4
1,466,040	+		HGI48_RS06910	0.63	-1.3
1,466,040	+		HGI48_RS06910	0.63	+1.4
1,466,040	+		HGI48_RS06910	0.63	-0.4
1,466,040	+				-0.1
1,466,041	-		HGI48_RS06910	0.64	-0.4
1,466,041	-		HGI48_RS06910	0.64	-1.7
1,466,041	-		HGI48_RS06910	0.64	-0.4
1,466,041	-		HGI48_RS06910	0.64	+0.6
1,466,041	-		HGI48_RS06910	0.64	-1.3
1,466,041	-		HGI48_RS06910	0.64	-0.8
1,466,041	-		HGI48_RS06910	0.64	-0.1
1,466,041	-		HGI48_RS06910	0.64	+0.6
1,466,103	+				+0.3
1,466,103	+		HGI48_RS06910	0.69	+1.8
1,466,269	+		HGI48_RS06910	0.84	-0.9
1,466,270	-		HGI48_RS06910	0.85	-0.2
1,466,270	-		HGI48_RS06910	0.85	-1.4
1,466,272	+		HGI48_RS06910	0.85	-0.9
1,466,273	-		HGI48_RS06910	0.85	-0.7
1,466,273	-		HGI48_RS06910	0.85	+0.2
1,466,273	-		HGI48_RS06910	0.85	-1.1
1,466,273	-		HGI48_RS06910	0.85	-1.9
1,466,273	-		HGI48_RS06910	0.85	-2.4
1,466,273	-		HGI48_RS06910	0.85	-0.7
1,466,273	-		HGI48_RS06910	0.85	-0.7
1,466,273	-		HGI48_RS06910	0.85	-1.0
1,466,387	+				+0.3
1,466,387	+				-2.4
1,466,387	+				-0.9
1,466,387	+				+0.9
1,466,387	+				-1.1
1,466,387	+				+0.1
1,466,387	+				-0.1
1,466,388	-				+1.9
1,466,388	-				+0.5
1,466,388	-				-1.4
1,466,388	-				-1.7
1,466,388	-				-2.1
1,466,388	-				-1.1
1,466,388	-				+0.6
1,466,388	-				+0.4
1,466,388	-				+1.5
1,466,405	-				+0.0
1,466,405	-				-0.7
1,466,434	+				+0.1
1,466,434	+				-1.1
1,466,435	-				+0.6
1,466,435	-				-1.9
1,466,435	-				-2.3
1,466,435	-				-0.1
1,466,435	-				-0.6
1,466,556	+				+1.6
1,466,557	-				-2.1
1,466,623	-		HGI48_RS06915	0.13	-0.9
1,466,689	+		HGI48_RS06915	0.17	-1.4
1,466,689	+		HGI48_RS06915	0.17	-1.1
1,466,689	+		HGI48_RS06915	0.17	-0.7
1,466,690	-		HGI48_RS06915	0.17	-0.6
1,466,690	-		HGI48_RS06915	0.17	+0.4
1,466,806	+		HGI48_RS06915	0.25	-1.1
1,466,807	-		HGI48_RS06915	0.25	+0.4
1,466,844	+		HGI48_RS06915	0.28	-1.4
1,466,845	-		HGI48_RS06915	0.28	-1.1
1,466,928	+		HGI48_RS06915	0.33	-0.9
1,466,928	+		HGI48_RS06915	0.33	-1.1
1,467,020	+		HGI48_RS06915	0.39	+1.5
1,467,020	+		HGI48_RS06915	0.39	+0.2
1,467,020	+		HGI48_RS06915	0.39	+0.5
1,467,021	-		HGI48_RS06915	0.39	-0.6
1,467,021	-		HGI48_RS06915	0.39	-1.1
1,467,021	-		HGI48_RS06915	0.39	-0.1
1,467,122	+		HGI48_RS06915	0.46	-0.4
1,467,243	+		HGI48_RS06915	0.54	-0.4
1,467,307	-		HGI48_RS06915	0.58	-1.1
1,467,340	+		HGI48_RS06915	0.60	-0.3
1,467,340	+		HGI48_RS06915	0.60	-1.0
1,467,340	+		HGI48_RS06915	0.60	-0.4
1,467,341	-		HGI48_RS06915	0.60	-0.6
1,467,362	-		HGI48_RS06915	0.62	-1.0
1,467,382	+		HGI48_RS06915	0.63	-1.1
1,467,383	-		HGI48_RS06915	0.63	-1.5
1,467,385	+		HGI48_RS06915	0.63	+0.5
1,467,385	+		HGI48_RS06915	0.63	-2.1
1,467,386	-		HGI48_RS06915	0.63	-0.1
1,467,386	-		HGI48_RS06915	0.63	-0.1
1,467,386	-		HGI48_RS06915	0.63	-0.7
1,467,388	+		HGI48_RS06915	0.64	-0.8
1,467,389	-		HGI48_RS06915	0.64	-1.0
1,467,389	-		HGI48_RS06915	0.64	-0.4
1,467,470	+		HGI48_RS06915	0.69	+0.7
1,467,470	+		HGI48_RS06915	0.69	+1.2
1,467,475	+		HGI48_RS06915	0.69	+1.7
1,467,475	+		HGI48_RS06915	0.69	-0.6
1,467,476	-		HGI48_RS06915	0.69	-0.3
1,467,476	-		HGI48_RS06915	0.69	-0.4
1,467,476	-		HGI48_RS06915	0.69	-0.7
1,467,476	-		HGI48_RS06915	0.69	+0.1
1,467,476	-		HGI48_RS06915	0.69	-1.8
1,467,476	-		HGI48_RS06915	0.69	-1.1
1,467,632	-		HGI48_RS06915	0.80	+0.9
1,467,703	+		HGI48_RS06915	0.84	-0.5
1,467,703	+		HGI48_RS06915	0.84	-0.1
1,467,703	+		HGI48_RS06915	0.84	-0.1
1,467,703	+		HGI48_RS06915	0.84	-1.1
1,467,703	+		HGI48_RS06915	0.84	-1.1
1,467,703	+		HGI48_RS06915	0.84	-1.9
1,467,704	-				-0.1
1,467,704	-		HGI48_RS06915	0.84	+0.2
1,467,704	-				+1.3
1,467,704	-		HGI48_RS06915	0.84	-0.4
1,467,704	-				-0.7
1,467,790	+				-0.8
1,467,790	+				-0.8
1,467,790	+				+1.1
1,467,791	-				-2.0
1,467,791	-				-0.1
1,467,842	-				-0.1
1,467,842	-				+0.7
1,467,844	+				+0.9
1,467,844	+				-0.7
1,467,844	+				-0.5
1,467,858	+				-0.7
1,467,859	-				-2.1
1,467,859	-				-1.1
1,467,890	-				-0.7
1,467,890	-				-0.6
1,467,925	-				+0.6
1,467,974	+				-0.8
1,467,975	-				+0.2
1,468,069	+				-1.4
1,468,069	+				-0.1
1,468,070	-				-0.3
1,468,070	-				-1.1
1,468,100	+				-0.2
1,468,100	+				+0.6
1,468,100	+				-0.6
1,468,100	+				-0.7
1,468,100	+				-0.6
1,468,100	+				-0.2
1,468,101	-				-1.0
1,468,101	-				-0.9
1,468,162	+		HGI48_RS06920	0.13	-0.3
1,468,163	-		HGI48_RS06920	0.13	+0.3
1,468,163	-		HGI48_RS06920	0.13	-0.9
1,468,379	+		HGI48_RS06920	0.27	-1.1
1,468,463	+		HGI48_RS06920	0.33	-0.7
1,468,463	+		HGI48_RS06920	0.33	-1.7
1,468,463	+		HGI48_RS06920	0.33	-0.1
1,468,752	-		HGI48_RS06920	0.53	-0.3
1,468,809	-		HGI48_RS06920	0.57	+0.5
1,468,817	+		HGI48_RS06920	0.57	-0.4
1,468,817	+		HGI48_RS06920	0.57	-1.4
1,468,817	+		HGI48_RS06920	0.57	-1.0
1,468,817	+		HGI48_RS06920	0.57	-0.9
1,468,817	+		HGI48_RS06920	0.57	-0.5
1,468,818	-		HGI48_RS06920	0.58	-1.1
1,468,818	-		HGI48_RS06920	0.58	-1.0
1,468,869	-		HGI48_RS06920	0.61	-0.4
1,468,869	-		HGI48_RS06920	0.61	-1.9