Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05410

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,132,908	-				-0.5
1,132,997	+		HGI48_RS05400	0.22	+1.3
1,132,997	+		HGI48_RS05400	0.22	-0.8
1,132,997	+		HGI48_RS05400	0.22	+0.1
1,133,050	-				+2.0
1,133,050	-		HGI48_RS05400	0.34	-1.6
1,133,050	-		HGI48_RS05400	0.34	-1.0
1,133,094	-		HGI48_RS05400	0.45	+0.2
1,133,162	+		HGI48_RS05400	0.61	-0.6
1,133,192	+		HGI48_RS05400	0.68	-0.8
1,133,245	+		HGI48_RS05400	0.81	-2.0
1,133,245	+		HGI48_RS05400	0.81	-1.9
1,133,245	+		HGI48_RS05400	0.81	+0.8
1,133,245	+		HGI48_RS05400	0.81	-1.3
1,133,246	-		HGI48_RS05400	0.81	-0.6
1,133,246	-		HGI48_RS05400	0.81	-2.0
1,133,246	-		HGI48_RS05400	0.81	+0.7
1,133,246	-				-0.6
1,133,246	-		HGI48_RS05400	0.81	+0.2
1,133,246	-		HGI48_RS05400	0.81	-1.5
1,133,246	-				+1.0
1,133,246	-		HGI48_RS05400	0.81	-3.0
1,133,246	-		HGI48_RS05400	0.81	-0.6
1,133,292	+				+1.8
1,133,311	+				-0.2
1,133,312	-				-0.7
1,133,312	-				+0.0
1,133,312	-				+0.5
1,133,312	-				+0.4
1,133,314	+				-1.6
1,133,314	+				+0.4
1,133,314	+				+0.3
1,133,314	+				-0.6
1,133,315	-				-0.3
1,133,315	-				-0.6
1,133,315	-				-1.3
1,133,315	-				-2.7
1,133,315	-				+0.4
1,133,315	-				-0.4
1,133,329	+				+1.0
1,133,329	+				-0.1
1,133,329	+				-1.3
1,133,483	+		HGI48_RS05405	0.28	-2.0
1,133,485	+		HGI48_RS05405	0.28	-0.9
1,133,486	-		HGI48_RS05405	0.29	-2.2
1,133,486	-		HGI48_RS05405	0.29	-0.4
1,133,516	+		HGI48_RS05405	0.34	+0.2
1,133,516	+		HGI48_RS05405	0.34	-0.8
1,133,516	+		HGI48_RS05405	0.34	-1.9
1,133,517	-		HGI48_RS05405	0.34	-0.1
1,133,675	-		HGI48_RS05405	0.63	+1.0
1,133,675	-		HGI48_RS05405	0.63	+0.3
1,133,675	-		HGI48_RS05405	0.63	+1.3
1,133,806	+		HGI48_RS05405	0.87	-2.7
1,133,815	+		HGI48_RS05405	0.88	-1.0
1,133,815	+		HGI48_RS05405	0.88	-1.0
1,133,816	-		HGI48_RS05405	0.88	-0.3
1,133,816	-		HGI48_RS05405	0.88	+0.0
1,133,852	+				-0.3
1,133,853	-				-1.0
1,133,863	+				-0.5
1,133,864	-				-1.0
1,133,864	-				+0.7
1,133,864	-				+0.6
1,133,864	-				+0.6
1,133,901	+				-0.2
1,133,933	+				-1.0
1,133,933	+				+0.2
1,133,982	+				-1.3
1,133,982	+				-0.8
1,133,982	+				-0.6
1,133,983	-				-0.8
1,133,983	-				-0.2
1,133,983	-				-1.6
1,133,983	-				+0.0
1,133,983	-				+0.8
1,133,983	-				-1.6
1,133,983	-				-1.0
1,133,985	+				+0.3
1,133,985	+				-1.3
1,133,985	+				-1.6
1,133,985	+				-1.3
1,133,986	-				-1.0
1,134,160	+		HGI48_RS05410	0.20	+0.4
1,134,160	+		HGI48_RS05410	0.20	+1.0
1,134,160	+				-0.6
1,134,161	-		HGI48_RS05410	0.21	+0.4
1,134,166	+		HGI48_RS05410	0.21	-1.0
1,134,166	+		HGI48_RS05410	0.21	-1.0
1,134,166	+				-0.6
1,134,167	-		HGI48_RS05410	0.21	-1.6
1,134,167	-		HGI48_RS05410	0.21	-2.8
1,134,167	-		HGI48_RS05410	0.21	-0.2
1,134,174	-		HGI48_RS05410	0.22	-0.8
1,134,179	+		HGI48_RS05410	0.22	-0.9
1,134,180	-		HGI48_RS05410	0.22	+0.8
1,134,181	+		HGI48_RS05410	0.22	+0.4
1,134,182	-				+1.4
1,134,291	-		HGI48_RS05410	0.31	+0.2
1,134,298	+		HGI48_RS05410	0.32	-0.6
1,134,298	+		HGI48_RS05410	0.32	-1.0
1,134,299	-		HGI48_RS05410	0.32	-0.6
1,134,380	+		HGI48_RS05410	0.38	+0.7
1,134,380	+		HGI48_RS05410	0.38	-2.3
1,134,381	-		HGI48_RS05410	0.38	-0.2
1,134,381	-		HGI48_RS05410	0.38	-1.0
1,134,382	+		HGI48_RS05410	0.38	-0.7
1,134,382	+		HGI48_RS05410	0.38	-0.4
1,134,383	-		HGI48_RS05410	0.39	-0.9
1,134,514	-		HGI48_RS05410	0.49	-0.2
1,134,550	+		HGI48_RS05410	0.52	-0.2
1,134,551	-		HGI48_RS05410	0.52	-0.2
1,134,654	+		HGI48_RS05410	0.60	-0.9
1,134,654	+		HGI48_RS05410	0.60	+0.4
1,134,664	+		HGI48_RS05410	0.61	-0.3
1,134,664	+		HGI48_RS05410	0.61	-0.3
1,134,664	+		HGI48_RS05410	0.61	-1.0
1,134,665	-		HGI48_RS05410	0.61	-0.6
1,134,665	-		HGI48_RS05410	0.61	-1.0
1,134,670	-		HGI48_RS05410	0.62	-0.3
1,134,670	-		HGI48_RS05410	0.62	+0.0
1,134,672	-		HGI48_RS05410	0.62	-1.0
1,134,672	-		HGI48_RS05410	0.62	-0.3
1,134,754	+		HGI48_RS05410	0.69	+0.2
1,134,755	-		HGI48_RS05410	0.69	+0.8
1,134,773	+		HGI48_RS05410	0.70	-1.3
1,134,773	+		HGI48_RS05410	0.70	+0.3
1,134,774	-		HGI48_RS05410	0.70	-0.3
1,134,774	-		HGI48_RS05410	0.70	-0.3
1,134,776	+		HGI48_RS05410	0.70	-0.8
1,134,777	-		HGI48_RS05410	0.70	+1.3
1,134,777	-		HGI48_RS05410	0.70	-1.0
1,134,826	-		HGI48_RS05410	0.74	-1.0
1,134,901	+		HGI48_RS05410	0.80	-1.0
1,134,901	+		HGI48_RS05410	0.80	+0.4
1,134,901	+				+1.4
1,134,916	+		HGI48_RS05410	0.82	-1.3
1,134,917	-		HGI48_RS05410	0.82	+0.6
1,134,957	+				+0.4
1,135,041	-				-1.2
1,135,073	+				+0.7
1,135,073	+				-1.2
1,135,074	-				-0.6
1,135,111	-				+1.0
1,135,164	+				-1.0
1,135,165	-				+0.8
1,135,165	-				-0.1
1,135,165	-				-0.6
1,135,165	-				+1.2
1,135,169	+				+1.0
1,135,241	-				+0.1
1,135,258	+				+0.0
1,135,262	+				+0.2
1,135,262	+				+0.0
1,135,263	-				-0.3
1,135,313	+				-0.5
1,135,314	-				-0.8
1,135,336	-				-1.2
1,135,336	-				-0.2
1,135,336	-				+0.9
1,135,346	+				-0.6
1,135,346	+				-2.3
1,135,347	-				-0.2
1,135,347	-				-2.3
1,135,447	+				-1.0
1,135,447	+				+1.2
1,135,448	-				+0.6
1,135,448	-				-1.3
1,135,529	-				-0.9
1,135,529	-				+1.0
1,135,529	-				-1.6
1,135,532	-				-1.0
1,135,546	+				-1.3
1,135,592	+				+0.0
1,135,593	-				-1.0
1,135,594	+				+0.7
1,135,655	+		HGI48_RS05415	0.11	-0.1
1,135,656	-				-0.6
1,135,656	-		HGI48_RS05415	0.12	-1.1
1,135,797	-		HGI48_RS05415	0.35	-0.4
1,135,797	-		HGI48_RS05415	0.35	-0.8
1,135,797	-		HGI48_RS05415	0.35	+1.2
1,135,800	-				-0.6
1,135,877	+		HGI48_RS05415	0.49	-0.5
1,135,950	+		HGI48_RS05415	0.61	-1.2
1,135,951	-		HGI48_RS05415	0.61	+0.1
1,135,951	-		HGI48_RS05415	0.61	-1.3
1,135,951	-		HGI48_RS05415	0.61	-1.0
1,135,951	-		HGI48_RS05415	0.61	+0.1
1,135,951	-				+1.7
1,135,951	-		HGI48_RS05415	0.61	-0.9
1,135,951	-		HGI48_RS05415	0.61	+0.0
1,135,973	+		HGI48_RS05415	0.65	-1.0
1,135,973	+		HGI48_RS05415	0.65	-1.8
1,135,974	-		HGI48_RS05415	0.65	-0.8
1,135,974	-		HGI48_RS05415	0.65	-1.0
1,135,974	-		HGI48_RS05415	0.65	-0.5
1,135,974	-		HGI48_RS05415	0.65	-1.0
1,135,977	-		HGI48_RS05415	0.65	-1.2
1,135,977	-		HGI48_RS05415	0.65	-0.8
1,135,977	-		HGI48_RS05415	0.65	-1.0
1,136,049	+		HGI48_RS05415	0.77	-0.8
1,136,049	+		HGI48_RS05415	0.77	-1.8
1,136,049	+		HGI48_RS05415	0.77	-0.6
1,136,049	+		HGI48_RS05415	0.77	+0.9
1,136,050	-		HGI48_RS05415	0.78	-0.2
1,136,062	+		HGI48_RS05415	0.80	-0.3
1,136,062	+		HGI48_RS05415	0.80	+0.6
1,136,062	+				+0.0
1,136,062	+		HGI48_RS05415	0.80	+0.9
1,136,062	+				+1.4
1,136,063	-		HGI48_RS05415	0.80	-1.8
1,136,063	-		HGI48_RS05415	0.80	+0.0
1,136,063	-		HGI48_RS05415	0.80	-0.4
1,136,063	-		HGI48_RS05415	0.80	+0.5
1,136,063	-		HGI48_RS05415	0.80	-0.8
1,136,063	-		HGI48_RS05415	0.80	-2.7
1,136,064	+		HGI48_RS05415	0.80	+0.6
1,136,064	+		HGI48_RS05415	0.80	+0.3
1,136,064	+				-0.6
1,136,064	+		HGI48_RS05415	0.80	-0.2
1,136,065	-		HGI48_RS05415	0.80	-1.7
1,136,065	-		HGI48_RS05415	0.80	-1.0
1,136,065	-		HGI48_RS05415	0.80	-0.2
1,136,065	-		HGI48_RS05415	0.80	-2.2
1,136,065	-		HGI48_RS05415	0.80	-0.6
1,136,065	-		HGI48_RS05415	0.80	-0.6
1,136,065	-		HGI48_RS05415	0.80	-0.8
1,136,065	-				+3.0
1,136,067	-		HGI48_RS05415	0.80	-0.6
1,136,073	-		HGI48_RS05415	0.81	+0.3
1,136,101	+		HGI48_RS05415	0.86	+0.2