Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04880

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,020,396	-				-0.2
1,020,414	+				+1.0
1,020,414	+				-0.5
1,020,415	-				-0.9
1,020,499	+				+0.7
1,020,499	+				+0.2
1,020,499	+				+0.1
1,020,499	+				-2.2
1,020,500	-				+0.6
1,020,500	-				+0.6
1,020,500	-				-0.5
1,020,500	-				-0.5
1,020,500	-				+0.5
1,020,500	-				-0.5
1,020,500	-				+0.3
1,020,506	-				-0.5
1,020,573	+				+0.7
1,020,574	-				+0.0
1,020,587	+				+1.0
1,020,587	+				-0.3
1,020,643	+		HGI48_RS04870	0.17	-0.0
1,020,643	+		HGI48_RS04870	0.17	-0.2
1,020,643	+		HGI48_RS04870	0.17	+0.0
1,020,644	-		HGI48_RS04870	0.17	+0.2
1,020,785	+		HGI48_RS04870	0.58	-1.5
1,020,785	+		HGI48_RS04870	0.58	-0.3
1,020,912	+				+0.3
1,020,912	+				+0.7
1,020,912	+				-2.3
1,020,912	+				+0.2
1,020,912	+				-0.5
1,020,933	+				-0.2
1,020,942	+				+0.5
1,020,943	-				-1.5
1,020,943	-				-0.8
1,020,976	-				+0.0
1,020,999	-				-1.7
1,021,019	-				-1.5
1,021,029	+				-1.5
1,021,041	+				+0.6
1,021,046	+				-0.3
1,021,046	+				+1.3
1,021,046	+				+0.2
1,021,046	+				-2.1
1,021,046	+				-0.0
1,021,046	+				-1.8
1,021,047	-				-1.0
1,021,047	-				-2.0
1,021,047	-				-1.1
1,021,047	-				+0.6
1,021,047	-				-0.1
1,021,047	-				-1.0
1,021,135	+		HGI48_RS04875	0.39	-0.8
1,021,136	-		HGI48_RS04875	0.40	+1.0
1,021,262	+				-0.5
1,021,263	-				-0.5
1,021,263	-				+1.0
1,021,279	+				+0.5
1,021,279	+				+0.9
1,021,280	-				+0.2
1,021,312	+				-0.9
1,021,339	-				-1.3
1,021,339	-				-1.3
1,021,345	+				+0.6
1,021,346	-				+3.0
1,021,391	+				-0.5
1,021,391	+				+1.0
1,021,392	-				+0.0
1,021,392	-				-0.7
1,021,393	+				+0.0
1,021,406	-				+1.0
1,021,406	-				-0.7
1,021,406	-				-0.3
1,021,409	+				-1.0
1,021,409	+				-1.1
1,021,409	+				-1.3
1,021,409	+				+0.5
1,021,410	-				-2.0
1,021,410	-				-1.7
1,021,410	-				-1.3
1,021,411	+				+1.0
1,021,411	+				-0.1
1,021,411	+				+2.0
1,021,412	-				-0.4
1,021,423	+				-1.0
1,021,424	-				-3.2
1,021,447	+				-0.3
1,021,499	+				-2.2
1,021,499	+				+0.0
1,021,499	+				-0.5
1,021,499	+				+0.7
1,021,499	+				+0.8
1,021,499	+				+1.4
1,021,500	-				+0.8
1,021,500	-				-0.3
1,021,500	-				-0.5
1,021,503	+				-1.0
1,021,503	+				-0.5
1,021,503	+				+0.3
1,021,503	+				-0.8
1,021,504	-				-1.5
1,021,504	-				+0.0
1,021,504	-				+2.0
1,021,504	-				+0.0
1,021,507	+		HGI48_RS04880	0.10	-0.3
1,021,507	+				-0.5
1,021,507	+		HGI48_RS04880	0.10	-1.0
1,021,507	+		HGI48_RS04880	0.10	+0.6
1,021,507	+		HGI48_RS04880	0.10	-1.0
1,021,508	-		HGI48_RS04880	0.10	-1.6
1,021,508	-		HGI48_RS04880	0.10	-1.5
1,021,508	-		HGI48_RS04880	0.10	+0.7
1,021,508	-		HGI48_RS04880	0.10	-1.1
1,021,508	-		HGI48_RS04880	0.10	-1.0
1,021,508	-		HGI48_RS04880	0.10	+0.7
1,021,508	-		HGI48_RS04880	0.10	-0.3
1,021,508	-		HGI48_RS04880	0.10	-1.0
1,021,627	-		HGI48_RS04880	0.20	-1.8
1,021,627	-		HGI48_RS04880	0.20	-0.5
1,021,703	+		HGI48_RS04880	0.26	-0.3
1,021,703	+		HGI48_RS04880	0.26	-0.7
1,021,703	+		HGI48_RS04880	0.26	+0.0
1,021,703	+		HGI48_RS04880	0.26	+0.2
1,021,704	-				+1.5
1,021,704	-		HGI48_RS04880	0.26	+0.6
1,021,704	-		HGI48_RS04880	0.26	-1.5
1,021,704	-		HGI48_RS04880	0.26	+1.4
1,021,704	-		HGI48_RS04880	0.26	-0.5
1,021,875	-		HGI48_RS04880	0.39	-1.0
1,021,875	-		HGI48_RS04880	0.39	+0.7
1,021,976	+		HGI48_RS04880	0.47	+0.8
1,021,976	+		HGI48_RS04880	0.47	-0.4
1,021,976	+		HGI48_RS04880	0.47	-3.0
1,021,976	+		HGI48_RS04880	0.47	+0.3
1,021,977	-		HGI48_RS04880	0.47	+0.5
1,021,977	-		HGI48_RS04880	0.47	-1.3
1,021,977	-				+1.0
1,021,984	+		HGI48_RS04880	0.48	+0.0
1,021,985	-		HGI48_RS04880	0.48	+0.3
1,021,988	+		HGI48_RS04880	0.48	-1.3
1,021,988	+		HGI48_RS04880	0.48	-0.2
1,022,093	-		HGI48_RS04880	0.57	+0.6
1,022,112	+		HGI48_RS04880	0.58	-0.3
1,022,112	+		HGI48_RS04880	0.58	-1.4
1,022,113	-		HGI48_RS04880	0.58	+0.5
1,022,133	-		HGI48_RS04880	0.60	+0.0
1,022,133	-		HGI48_RS04880	0.60	-1.5
1,022,260	+		HGI48_RS04880	0.70	+0.1
1,022,344	+		HGI48_RS04880	0.77	-2.1
1,022,344	+		HGI48_RS04880	0.77	+0.3
1,022,345	-		HGI48_RS04880	0.77	-1.5
1,022,422	-		HGI48_RS04880	0.83	+0.3
1,022,422	-		HGI48_RS04880	0.83	-1.5
1,022,426	+		HGI48_RS04880	0.83	-0.4
1,022,426	+		HGI48_RS04880	0.83	+0.7
1,022,426	+		HGI48_RS04880	0.83	-0.2
1,022,426	+				+3.4
1,022,426	+		HGI48_RS04880	0.83	-0.5
1,022,426	+				+0.5
1,022,426	+		HGI48_RS04880	0.83	+0.0
1,022,427	-		HGI48_RS04880	0.83	-1.0
1,022,427	-		HGI48_RS04880	0.83	-0.5
1,022,427	-		HGI48_RS04880	0.83	-2.1
1,022,427	-		HGI48_RS04880	0.83	-0.6
1,022,427	-		HGI48_RS04880	0.83	-1.2
1,022,427	-		HGI48_RS04880	0.83	-1.1
1,022,427	-		HGI48_RS04880	0.83	-0.5
1,022,427	-		HGI48_RS04880	0.83	-1.1
1,022,465	+		HGI48_RS04880	0.86	+0.0
1,022,465	+		HGI48_RS04880	0.86	-0.8
1,022,466	-		HGI48_RS04880	0.86	+0.4
1,022,466	-		HGI48_RS04880	0.86	-1.8
1,022,527	+				+0.4
1,022,528	-				-1.0
1,022,532	+				-0.5
1,022,532	+				-2.0
1,022,532	+				-0.1
1,022,532	+				-1.8
1,022,533	-				-1.3
1,022,533	-				-2.4
1,022,563	+				-0.3
1,022,564	-				+0.0
1,022,564	-				-0.7
1,022,588	+				+0.3
1,022,589	-				-1.0
1,022,589	-				-1.3
1,022,590	+				-1.3
1,022,590	+				-1.1
1,022,635	-				+3.0
1,022,639	+				-0.5
1,022,639	+				+0.8
1,022,639	+				-1.0
1,022,640	-				+1.7
1,022,765	+				+1.0
1,022,766	-				+2.0
1,022,889	+				-0.4
1,022,896	+				+0.4
1,022,896	+				+0.2
1,022,896	+				-1.3
1,022,896	+				-1.3
1,022,896	+				-0.4
1,022,897	-				+1.3
1,022,897	-				-0.8
1,022,961	+				-0.8
1,022,962	-				-1.0
1,023,047	-				+0.3
1,023,051	-				+1.5
1,023,051	-				-1.0
1,023,114	+				-0.5
1,023,114	+				-0.1
1,023,115	-				-1.5
1,023,115	-				-1.3
1,023,115	-				+0.0
1,023,148	+				-0.6
1,023,149	-				-0.2
1,023,149	-				-1.3
1,023,171	+				-1.1
1,023,172	-				-0.7
1,023,306	-				+1.6
1,023,331	-				+0.0
1,023,340	+				-1.8
1,023,363	+				-1.0
1,023,363	+				-1.6
1,023,364	-				+0.0
1,023,399	+				-0.8
1,023,400	-				-0.1
1,023,445	+				-0.8
1,023,445	+				+0.0
1,023,462	+				+0.0
1,023,469	-				+0.7
1,023,502	-				+0.0
1,023,502	-				+0.2
1,023,509	+				-1.8
1,023,509	+				-0.1
1,023,509	+				+0.2
1,023,509	+				+0.0
1,023,509	+				-1.3
1,023,509	+				-0.7
1,023,510	-				-1.2
1,023,510	-				+0.0
1,023,510	-				+0.4
1,023,510	-				-1.1
1,023,510	-				+1.2
1,023,510	-				+2.0
1,023,510	-				-0.2
1,023,510	-				-0.5
1,023,537	+				-2.1
1,023,539	+				-2.0
1,023,539	+				-1.0
1,023,553	-				-2.1
1,023,588	+				+0.7
1,023,588	+				-0.7
1,023,589	-				+0.2