Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04625 and HGI48_RS04630 are separated by 675 nucleotides HGI48_RS04630 and HGI48_RS04635 are separated by 333 nucleotides HGI48_RS04635 and HGI48_RS04640 are separated by 99 nucleotides
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
HGI48_RS04635: HGI48_RS04635 - TIGR00645 family protein, at 972,189 to 972,722
_RS04635
HGI48_RS04640: HGI48_RS04640 - molybdopterin-dependent oxidoreductase, at 972,822 to 975,083
_RS04640
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 969.197 kb on + strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.198 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.303 kb on + strand at 969.308 kb on + strand, within HGI48_RS04625 at 969.325 kb on + strand, within HGI48_RS04625 at 969.326 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.335 kb on + strand, within HGI48_RS04625 at 969.393 kb on + strand at 969.393 kb on + strand at 969.393 kb on + strand at 969.394 kb on - strand at 969.394 kb on - strand at 969.398 kb on - strand at 969.398 kb on - strand at 969.416 kb on + strand at 969.417 kb on - strand at 969.417 kb on - strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.420 kb on - strand at 969.491 kb on - strand at 969.496 kb on - strand at 969.503 kb on + strand at 969.503 kb on + strand at 969.504 kb on - strand at 969.513 kb on + strand at 969.552 kb on + strand at 969.553 kb on - strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.598 kb on - strand at 969.605 kb on + strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.646 kb on + strand at 969.647 kb on - strand at 969.655 kb on + strand at 969.658 kb on + strand at 969.659 kb on - strand at 969.662 kb on + strand at 969.663 kb on - strand at 969.690 kb on + strand at 969.719 kb on - strand at 969.741 kb on + strand at 969.742 kb on - strand at 969.744 kb on + strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.764 kb on - strand at 969.811 kb on + strand at 969.843 kb on + strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.873 kb on + strand at 969.873 kb on + strand at 969.874 kb on - strand at 969.883 kb on + strand at 969.884 kb on - strand at 969.884 kb on - strand at 969.887 kb on + strand at 969.977 kb on - strand at 969.977 kb on - strand at 970.027 kb on + strand at 970.027 kb on + strand at 970.028 kb on - strand at 970.028 kb on - strand at 970.029 kb on + strand at 970.029 kb on + strand at 970.030 kb on - strand at 970.030 kb on - strand at 970.039 kb on + strand at 970.039 kb on + strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.043 kb on + strand at 970.043 kb on + strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.055 kb on + strand at 970.056 kb on - strand at 970.057 kb on + strand at 970.057 kb on + strand at 970.058 kb on - strand at 970.159 kb on + strand at 970.159 kb on + strand at 970.160 kb on - strand at 970.160 kb on - strand at 970.212 kb on + strand at 970.213 kb on - strand at 970.236 kb on - strand at 970.277 kb on - strand at 970.297 kb on + strand at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.471 kb on + strand, within HGI48_RS04630 at 970.471 kb on + strand, within HGI48_RS04630 at 970.474 kb on + strand, within HGI48_RS04630 at 970.475 kb on - strand, within HGI48_RS04630 at 970.546 kb on + strand, within HGI48_RS04630 at 970.546 kb on + strand, within HGI48_RS04630 at 970.547 kb on - strand at 970.547 kb on - strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.011 kb on + strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.012 kb on - strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.092 kb on + strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.093 kb on - strand, within HGI48_RS04630 at 971.152 kb on + strand, within HGI48_RS04630 at 971.155 kb on + strand, within HGI48_RS04630 at 971.155 kb on + strand, within HGI48_RS04630 at 971.245 kb on + strand, within HGI48_RS04630 at 971.349 kb on - strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.446 kb on + strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand, within HGI48_RS04630 at 971.447 kb on - strand at 971.447 kb on - strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.499 kb on + strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.500 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.525 kb on - strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.605 kb on + strand, within HGI48_RS04630 at 971.856 kb on - strand at 971.895 kb on + strand at 971.895 kb on + strand at 971.896 kb on - strand at 971.909 kb on - strand at 971.916 kb on + strand at 971.917 kb on - strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.015 kb on - strand at 972.063 kb on + strand at 972.150 kb on + strand at 972.175 kb on - strand at 972.210 kb on - strand at 972.210 kb on - strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.247 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand at 972.610 kb on + strand, within HGI48_RS04635 at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 969,197 + HGI48_RS04625 0.59 -0.9 969,197 + HGI48_RS04625 0.59 -2.0 969,198 - HGI48_RS04625 0.59 -1.0 969,230 - HGI48_RS04625 0.64 +0.0 969,230 - HGI48_RS04625 0.64 -0.1 969,303 + -0.5 969,308 + HGI48_RS04625 0.77 -2.1 969,325 + HGI48_RS04625 0.80 +1.2 969,326 - HGI48_RS04625 0.80 -0.9 969,330 - HGI48_RS04625 0.80 +0.2 969,330 - HGI48_RS04625 0.80 -2.4 969,335 + HGI48_RS04625 0.81 -0.9 969,393 + -0.5 969,393 + +0.0 969,393 + +0.0 969,394 - -0.7 969,394 - -2.0 969,398 - -1.3 969,398 - -0.8 969,416 + +0.7 969,417 - +0.0 969,417 - -0.5 969,419 + -1.1 969,419 + -0.3 969,419 + -1.1 969,419 + +1.5 969,420 - +0.8 969,491 - -0.1 969,496 - -0.7 969,503 + +1.4 969,503 + +1.0 969,504 - -0.9 969,513 + +0.9 969,552 + +0.0 969,553 - -0.1 969,563 + -0.8 969,563 + -1.4 969,563 + +0.2 969,563 + +0.1 969,563 + +0.8 969,563 + +0.2 969,563 + +0.7 969,563 + +0.6 969,563 + -1.0 969,563 + +0.1 969,563 + -0.1 969,564 - -0.9 969,564 - +0.1 969,564 - -2.3 969,564 - -1.5 969,564 - +0.5 969,564 - -0.2 969,564 - -1.3 969,598 - +0.3 969,605 + +0.0 969,606 - -1.3 969,606 - +0.4 969,606 - -0.2 969,606 - +0.5 969,646 + -1.0 969,647 - +0.5 969,655 + -1.3 969,658 + +0.3 969,659 - +0.8 969,662 + +1.0 969,663 - +0.7 969,690 + +0.5 969,719 - -0.2 969,741 + +0.0 969,742 - +1.3 969,744 + -0.5 969,745 - -2.6 969,745 - -0.3 969,745 - -2.4 969,746 + +0.1 969,746 + -1.0 969,747 - -1.8 969,747 - +1.6 969,747 - +0.0 969,747 - -2.1 969,764 - -0.5 969,811 + +0.0 969,843 + +2.6 969,844 - -0.5 969,844 - -1.0 969,844 - +1.3 969,873 + -0.5 969,873 + -1.4 969,874 - -1.4 969,883 + -1.3 969,884 - +0.3 969,884 - -2.5 969,887 + -1.3 969,977 - -2.0 969,977 - -1.8 970,027 + +1.0 970,027 + -0.5 970,028 - +0.3 970,028 - -0.4 970,029 + +1.5 970,029 + -1.0 970,030 - -1.7 970,030 - -1.0 970,039 + +1.0 970,039 + -0.2 970,040 - -0.5 970,040 - -1.3 970,040 - +0.0 970,040 - -3.2 970,043 + -1.0 970,043 + -1.1 970,044 - +0.1 970,044 - +1.3 970,044 - -1.0 970,044 - +1.3 970,055 + -0.2 970,056 - -1.7 970,057 + -1.3 970,057 + +0.2 970,058 - +0.2 970,159 + -1.3 970,159 + -0.3 970,160 - +1.0 970,160 - -1.7 970,212 + +0.0 970,213 - -1.0 970,236 - -0.0 970,277 - -1.4 970,297 + +1.2 970,408 + HGI48_RS04630 0.16 +0.0 970,408 + HGI48_RS04630 0.16 +0.0 970,408 + HGI48_RS04630 0.16 -1.8 970,409 - HGI48_RS04630 0.16 +0.0 970,409 - HGI48_RS04630 0.16 -1.3 970,409 - HGI48_RS04630 0.16 +1.0 970,409 - HGI48_RS04630 0.16 -0.4 970,409 - HGI48_RS04630 0.16 -0.5 970,409 - HGI48_RS04630 0.16 -0.5 970,442 + HGI48_RS04630 0.18 -1.3 970,442 + HGI48_RS04630 0.18 -0.6 970,442 + HGI48_RS04630 0.18 +1.4 970,442 + HGI48_RS04630 0.18 -0.5 970,471 + HGI48_RS04630 0.20 -1.3 970,471 + HGI48_RS04630 0.20 +0.5 970,474 + HGI48_RS04630 0.20 +0.3 970,475 - HGI48_RS04630 0.20 -1.4 970,546 + HGI48_RS04630 0.24 +0.0 970,546 + HGI48_RS04630 0.24 +1.0 970,547 - +1.0 970,547 - HGI48_RS04630 0.24 +1.0 971,011 + HGI48_RS04630 0.51 -0.5 971,011 + HGI48_RS04630 0.51 -1.0 971,011 + HGI48_RS04630 0.51 -2.0 971,011 + HGI48_RS04630 0.51 -0.7 971,012 - HGI48_RS04630 0.51 -0.3 971,012 - -0.5 971,012 - HGI48_RS04630 0.51 -0.8 971,012 - HGI48_RS04630 0.51 -0.3 971,012 - HGI48_RS04630 0.51 -1.5 971,092 + HGI48_RS04630 0.56 +0.0 971,092 + HGI48_RS04630 0.56 +0.0 971,092 + HGI48_RS04630 0.56 -0.3 971,092 + HGI48_RS04630 0.56 -2.3 971,092 + HGI48_RS04630 0.56 -0.1 971,092 + HGI48_RS04630 0.56 -1.0 971,093 - HGI48_RS04630 0.56 +0.0 971,093 - HGI48_RS04630 0.56 -1.0 971,093 - HGI48_RS04630 0.56 -0.1 971,093 - HGI48_RS04630 0.56 -2.3 971,093 - HGI48_RS04630 0.56 +0.0 971,152 + HGI48_RS04630 0.59 -0.1 971,155 + HGI48_RS04630 0.60 +0.0 971,155 + HGI48_RS04630 0.60 -2.1 971,245 + HGI48_RS04630 0.65 -1.5 971,349 - HGI48_RS04630 0.71 -0.4 971,446 + HGI48_RS04630 0.76 -1.3 971,446 + HGI48_RS04630 0.76 -0.3 971,446 + HGI48_RS04630 0.76 -1.0 971,446 + HGI48_RS04630 0.76 -0.7 971,446 + HGI48_RS04630 0.76 -1.7 971,446 + HGI48_RS04630 0.76 -0.3 971,446 + HGI48_RS04630 0.76 -2.0 971,446 + HGI48_RS04630 0.76 -1.0 971,447 - HGI48_RS04630 0.76 -0.5 971,447 - HGI48_RS04630 0.76 +0.6 971,447 - +3.0 971,447 - HGI48_RS04630 0.76 -0.4 971,499 + HGI48_RS04630 0.79 -1.7 971,499 + HGI48_RS04630 0.79 +0.0 971,499 + HGI48_RS04630 0.79 +0.0 971,500 - HGI48_RS04630 0.79 -0.5 971,500 - HGI48_RS04630 0.79 +0.1 971,500 - HGI48_RS04630 0.79 +0.6 971,525 - HGI48_RS04630 0.81 -1.3 971,525 - HGI48_RS04630 0.81 -0.2 971,605 + HGI48_RS04630 0.85 +0.7 971,605 + HGI48_RS04630 0.85 -1.7 971,605 + HGI48_RS04630 0.85 -0.3 971,856 - +0.0 971,895 + -3.0 971,895 + -0.5 971,896 - -0.5 971,909 - +0.0 971,916 + -2.0 971,917 - +0.7 972,014 + +0.6 972,014 + -1.8 972,014 + -0.7 972,014 + -0.3 972,014 + +0.5 972,015 - -1.7 972,063 + -0.5 972,150 + +0.0 972,175 - +0.5 972,210 - -1.1 972,210 - -2.1 972,216 + +0.0 972,216 + -0.4 972,216 + +0.2 972,216 + +1.5 972,217 - -1.5 972,217 - +0.5 972,217 - +0.0 972,217 - -1.1 972,217 - +0.3 972,247 - HGI48_RS04635 0.11 -0.1 972,421 - HGI48_RS04635 0.43 -0.2 972,421 - HGI48_RS04635 0.43 -1.0 972,603 + HGI48_RS04635 0.78 -1.5 972,603 + HGI48_RS04635 0.78 -0.6 972,603 + HGI48_RS04635 0.78 -1.3 972,603 + HGI48_RS04635 0.78 -1.8 972,604 - HGI48_RS04635 0.78 -0.5 972,604 - HGI48_RS04635 0.78 -1.7 972,604 - HGI48_RS04635 0.78 -1.5 972,604 - +1.0 972,610 + HGI48_RS04635 0.79 -1.0 972,713 + +0.0 972,713 + -1.3 972,713 + +0.4 972,713 + -1.8 972,713 + -1.1 972,720 + -2.1 972,720 + +0.0 972,720 + -0.3 972,720 + -0.5 972,720 + -1.0 972,720 + -1.4 972,720 + -0.3 972,721 - -0.3 972,721 - -0.7 972,721 - -0.5 972,721 - -1.5 972,721 - -0.1
Or see this region's nucleotide sequence