Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04610 and HGI48_RS04615 overlap by 26 nucleotides HGI48_RS04615 and HGI48_RS04620 are separated by 5 nucleotides HGI48_RS04620 and HGI48_RS04625 are separated by 0 nucleotides
HGI48_RS04610: HGI48_RS04610 - LysR family transcriptional regulator, at 966,180 to 967,136
_RS04610
HGI48_RS04615: HGI48_RS04615 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 967,111 to 967,953
_RS04615
HGI48_RS04620: HGI48_RS04620 - queuosine precursor transporter, at 967,959 to 968,834
_RS04620
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.980 kb on + strand, within HGI48_RS04610 at 966.984 kb on + strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 967.112 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.196 kb on + strand, within HGI48_RS04615 at 967.197 kb on - strand, within HGI48_RS04615 at 967.197 kb on - strand, within HGI48_RS04615 at 967.233 kb on - strand, within HGI48_RS04615 at 967.233 kb on - strand, within HGI48_RS04615 at 967.248 kb on + strand, within HGI48_RS04615 at 967.307 kb on + strand, within HGI48_RS04615 at 967.346 kb on + strand, within HGI48_RS04615 at 967.346 kb on + strand, within HGI48_RS04615 at 967.379 kb on + strand, within HGI48_RS04615 at 967.379 kb on + strand, within HGI48_RS04615 at 967.380 kb on - strand, within HGI48_RS04615 at 967.467 kb on - strand, within HGI48_RS04615 at 967.630 kb on + strand, within HGI48_RS04615 at 967.671 kb on + strand, within HGI48_RS04615 at 967.672 kb on - strand, within HGI48_RS04615 at 967.676 kb on + strand, within HGI48_RS04615 at 967.677 kb on - strand, within HGI48_RS04615 at 967.728 kb on + strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.802 kb on + strand, within HGI48_RS04615 at 967.889 kb on + strand at 967.890 kb on - strand at 967.944 kb on + strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.947 kb on + strand at 967.947 kb on + strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 968.021 kb on - strand at 968.047 kb on + strand, within HGI48_RS04620 at 968.048 kb on - strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.192 kb on - strand, within HGI48_RS04620 at 968.258 kb on - strand, within HGI48_RS04620 at 968.311 kb on + strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.324 kb on - strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.462 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.504 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.505 kb on - strand at 968.520 kb on - strand, within HGI48_RS04620 at 968.557 kb on + strand, within HGI48_RS04620 at 968.590 kb on + strand, within HGI48_RS04620 at 968.629 kb on + strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.763 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.838 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand at 969.056 kb on + strand, within HGI48_RS04625 at 969.056 kb on + strand, within HGI48_RS04625 at 969.056 kb on + strand, within HGI48_RS04625 at 969.080 kb on - strand, within HGI48_RS04625 at 969.103 kb on - strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.198 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.303 kb on + strand at 969.308 kb on + strand, within HGI48_RS04625 at 969.325 kb on + strand, within HGI48_RS04625 at 969.326 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.335 kb on + strand, within HGI48_RS04625 at 969.393 kb on + strand at 969.393 kb on + strand at 969.393 kb on + strand at 969.394 kb on - strand at 969.394 kb on - strand at 969.398 kb on - strand at 969.398 kb on - strand at 969.416 kb on + strand at 969.417 kb on - strand at 969.417 kb on - strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.420 kb on - strand at 969.491 kb on - strand at 969.496 kb on - strand at 969.503 kb on + strand at 969.503 kb on + strand at 969.504 kb on - strand at 969.513 kb on + strand at 969.552 kb on + strand at 969.553 kb on - strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.598 kb on - strand at 969.605 kb on + strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.646 kb on + strand at 969.647 kb on - strand at 969.655 kb on + strand at 969.658 kb on + strand at 969.659 kb on - strand at 969.662 kb on + strand at 969.663 kb on - strand at 969.690 kb on + strand at 969.719 kb on - strand at 969.741 kb on + strand at 969.742 kb on - strand at 969.744 kb on + strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.764 kb on - strand at 969.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 966,960 + HGI48_RS04610 0.82 +1.0 966,960 + +0.0 966,960 + HGI48_RS04610 0.82 -1.3 966,960 + HGI48_RS04610 0.82 -0.7 966,961 - HGI48_RS04610 0.82 -1.0 966,961 - HGI48_RS04610 0.82 +0.0 966,961 - HGI48_RS04610 0.82 -1.5 966,961 - HGI48_RS04610 0.82 -0.8 966,980 + HGI48_RS04610 0.84 +0.0 966,984 + HGI48_RS04610 0.84 +0.2 966,994 - HGI48_RS04610 0.85 -0.2 966,994 - HGI48_RS04610 0.85 -0.3 966,994 - HGI48_RS04610 0.85 +0.5 967,112 + +1.0 967,194 + +0.0 967,195 - -0.3 967,196 + HGI48_RS04615 0.10 +0.5 967,197 - HGI48_RS04615 0.10 -1.4 967,197 - HGI48_RS04615 0.10 -1.0 967,233 - HGI48_RS04615 0.14 -0.4 967,233 - HGI48_RS04615 0.14 -1.0 967,248 + HGI48_RS04615 0.16 +2.9 967,307 + HGI48_RS04615 0.23 +0.3 967,346 + HGI48_RS04615 0.28 -1.3 967,346 + HGI48_RS04615 0.28 -0.3 967,379 + HGI48_RS04615 0.32 +0.0 967,379 + HGI48_RS04615 0.32 -0.3 967,380 - HGI48_RS04615 0.32 +0.0 967,467 - HGI48_RS04615 0.42 -2.0 967,630 + HGI48_RS04615 0.62 +0.2 967,671 + HGI48_RS04615 0.66 -1.8 967,672 - HGI48_RS04615 0.67 +0.2 967,676 + HGI48_RS04615 0.67 +1.7 967,677 - HGI48_RS04615 0.67 -0.9 967,728 + HGI48_RS04615 0.73 +1.0 967,729 - HGI48_RS04615 0.73 -0.3 967,729 - HGI48_RS04615 0.73 -0.8 967,729 - HGI48_RS04615 0.73 -0.5 967,802 + HGI48_RS04615 0.82 +0.8 967,889 + -0.4 967,890 - +1.6 967,944 + -0.4 967,945 - -1.1 967,945 - -0.5 967,945 - -1.3 967,947 + +0.3 967,947 + -0.5 967,948 - -0.5 967,948 - +0.0 967,948 - -0.1 967,948 - -0.7 967,948 - -0.5 968,021 - -2.5 968,047 + HGI48_RS04620 0.10 +2.3 968,048 - HGI48_RS04620 0.10 -2.4 968,111 + HGI48_RS04620 0.17 +0.4 968,111 + HGI48_RS04620 0.17 -1.3 968,112 - HGI48_RS04620 0.17 -0.5 968,112 - HGI48_RS04620 0.17 -0.6 968,114 - HGI48_RS04620 0.18 +0.0 968,114 - HGI48_RS04620 0.18 +0.7 968,192 - HGI48_RS04620 0.27 -0.3 968,258 - HGI48_RS04620 0.34 -1.8 968,311 + HGI48_RS04620 0.40 -0.4 968,312 - HGI48_RS04620 0.40 +0.0 968,312 - HGI48_RS04620 0.40 -2.3 968,324 - HGI48_RS04620 0.42 -1.1 968,405 + HGI48_RS04620 0.51 +0.6 968,405 + HGI48_RS04620 0.51 -0.5 968,406 - HGI48_RS04620 0.51 -0.1 968,406 - HGI48_RS04620 0.51 -0.9 968,406 - HGI48_RS04620 0.51 -0.5 968,406 - HGI48_RS04620 0.51 -1.3 968,462 + HGI48_RS04620 0.57 -2.1 968,504 + -0.5 968,504 + HGI48_RS04620 0.62 -0.8 968,504 + +0.0 968,505 - -0.5 968,520 - HGI48_RS04620 0.64 -0.6 968,557 + HGI48_RS04620 0.68 +0.6 968,590 + HGI48_RS04620 0.72 -0.2 968,629 + HGI48_RS04620 0.76 -2.0 968,630 - HGI48_RS04620 0.77 -1.0 968,630 - HGI48_RS04620 0.77 -0.5 968,763 + -0.4 968,836 + +1.0 968,836 + -0.3 968,836 + -2.1 968,837 - -1.3 968,837 - -1.3 968,837 - -0.5 968,837 - -1.5 968,837 - -0.5 968,837 - -1.5 968,838 + -0.8 968,850 + -1.7 968,850 + +0.2 968,850 + +0.3 968,855 + -1.8 968,855 + +1.0 968,855 + -0.2 968,855 + +1.4 968,855 + +0.5 968,855 + -0.0 968,855 + +0.6 968,855 + +1.0 968,855 + -1.0 968,855 + +0.4 968,855 + -2.1 968,855 + -0.7 968,855 + -0.3 968,855 + -1.3 968,855 + -1.0 968,855 + +2.0 968,856 - +1.6 968,856 - +0.0 968,856 - -1.1 968,856 - -1.5 968,856 - +1.3 968,856 - -2.0 968,856 - +1.0 968,856 - -0.2 968,856 - +0.6 968,856 - -1.2 968,856 - -0.5 968,856 - -0.2 968,857 + -1.0 968,857 + -0.4 968,857 + -0.3 968,858 - -0.5 968,858 - +0.0 968,858 - -0.2 968,858 - -0.1 969,056 + HGI48_RS04625 0.36 +2.6 969,056 + HGI48_RS04625 0.36 -2.0 969,056 + HGI48_RS04625 0.36 +0.6 969,080 - HGI48_RS04625 0.40 +0.0 969,103 - HGI48_RS04625 0.44 -0.2 969,197 + HGI48_RS04625 0.59 -0.9 969,197 + HGI48_RS04625 0.59 -2.0 969,198 - HGI48_RS04625 0.59 -1.0 969,230 - HGI48_RS04625 0.64 +0.0 969,230 - HGI48_RS04625 0.64 -0.1 969,303 + -0.5 969,308 + HGI48_RS04625 0.77 -2.1 969,325 + HGI48_RS04625 0.80 +1.2 969,326 - HGI48_RS04625 0.80 -0.9 969,330 - HGI48_RS04625 0.80 +0.2 969,330 - HGI48_RS04625 0.80 -2.4 969,335 + HGI48_RS04625 0.81 -0.9 969,393 + -0.5 969,393 + +0.0 969,393 + +0.0 969,394 - -0.7 969,394 - -2.0 969,398 - -1.3 969,398 - -0.8 969,416 + +0.7 969,417 - +0.0 969,417 - -0.5 969,419 + -1.1 969,419 + -0.3 969,419 + -1.1 969,419 + +1.5 969,420 - +0.8 969,491 - -0.1 969,496 - -0.7 969,503 + +1.4 969,503 + +1.0 969,504 - -0.9 969,513 + +0.9 969,552 + +0.0 969,553 - -0.1 969,563 + -0.8 969,563 + -1.4 969,563 + +0.2 969,563 + +0.1 969,563 + +0.8 969,563 + +0.2 969,563 + +0.7 969,563 + +0.6 969,563 + -1.0 969,563 + +0.1 969,563 + -0.1 969,564 - -0.9 969,564 - +0.1 969,564 - -2.3 969,564 - -1.5 969,564 - +0.5 969,564 - -0.2 969,564 - -1.3 969,598 - +0.3 969,605 + +0.0 969,606 - -1.3 969,606 - +0.4 969,606 - -0.2 969,606 - +0.5 969,646 + -1.0 969,647 - +0.5 969,655 + -1.3 969,658 + +0.3 969,659 - +0.8 969,662 + +1.0 969,663 - +0.7 969,690 + +0.5 969,719 - -0.2 969,741 + +0.0 969,742 - +1.3 969,744 + -0.5 969,745 - -2.6 969,745 - -0.3 969,745 - -2.4 969,746 + +0.1 969,746 + -1.0 969,747 - -1.8 969,747 - +1.6 969,747 - +0.0 969,747 - -2.1 969,764 - -0.5 969,811 + +0.0
Or see this region's nucleotide sequence