Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04600 and HGI48_RS04605 are separated by 123 nucleotides HGI48_RS04605 and HGI48_RS04610 are separated by 121 nucleotides
HGI48_RS04600: HGI48_RS04600 - hypothetical protein, at 964,226 to 964,849
_RS04600
HGI48_RS04605: HGI48_RS04605 - tartrate dehydrogenase, at 964,973 to 966,058
_RS04605
HGI48_RS04610: HGI48_RS04610 - LysR family transcriptional regulator, at 966,180 to 967,136
_RS04610
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 964.014 kb on + strand at 964.014 kb on + strand at 964.014 kb on + strand at 964.015 kb on - strand at 964.015 kb on - strand at 964.047 kb on + strand at 964.047 kb on + strand at 964.110 kb on + strand at 964.130 kb on - strand at 964.153 kb on - strand at 964.153 kb on - strand at 964.162 kb on - strand at 964.162 kb on - strand at 964.165 kb on + strand at 964.165 kb on + strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.170 kb on + strand at 964.170 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.181 kb on - strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.318 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.356 kb on + strand at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.359 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.453 kb on + strand, within HGI48_RS04600 at 964.472 kb on + strand, within HGI48_RS04600 at 964.473 kb on - strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.498 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.572 kb on - strand at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.613 kb on - strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.673 kb on - strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.687 kb on - strand, within HGI48_RS04600 at 964.718 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.809 kb on + strand at 964.809 kb on + strand at 964.809 kb on + strand at 964.809 kb on + strand at 964.810 kb on - strand at 964.810 kb on - strand at 964.810 kb on - strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.851 kb on - strand at 964.894 kb on + strand at 964.956 kb on + strand at 964.975 kb on - strand at 965.363 kb on + strand at 965.364 kb on - strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.637 kb on + strand, within HGI48_RS04605 at 965.637 kb on + strand, within HGI48_RS04605 at 965.667 kb on + strand, within HGI48_RS04605 at 965.667 kb on + strand, within HGI48_RS04605 at 965.668 kb on - strand, within HGI48_RS04605 at 965.668 kb on - strand, within HGI48_RS04605 at 965.748 kb on + strand, within HGI48_RS04605 at 965.748 kb on + strand, within HGI48_RS04605 at 965.749 kb on - strand, within HGI48_RS04605 at 965.749 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605 at 965.904 kb on + strand, within HGI48_RS04605 at 966.111 kb on + strand at 966.112 kb on - strand at 966.112 kb on - strand at 966.112 kb on - strand at 966.115 kb on + strand at 966.116 kb on - strand at 966.116 kb on - strand at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.333 kb on - strand, within HGI48_RS04610 at 966.333 kb on - strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand at 966.427 kb on + strand at 966.428 kb on - strand at 966.497 kb on + strand at 966.498 kb on - strand, within HGI48_RS04610 at 966.560 kb on + strand, within HGI48_RS04610 at 966.561 kb on - strand, within HGI48_RS04610 at 966.691 kb on - strand, within HGI48_RS04610 at 966.763 kb on - strand, within HGI48_RS04610 at 966.792 kb on + strand, within HGI48_RS04610 at 966.813 kb on - strand, within HGI48_RS04610 at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.980 kb on + strand, within HGI48_RS04610 at 966.984 kb on + strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 964,014 + -0.2 964,014 + -0.2 964,014 + -0.1 964,015 - +0.0 964,015 - +2.0 964,047 + -1.3 964,047 + -2.0 964,110 + +1.0 964,130 - -0.4 964,153 - -1.2 964,153 - -0.4 964,162 - -0.2 964,162 - -1.5 964,165 + -1.3 964,165 + -1.3 964,166 - +2.4 964,166 - -1.9 964,166 - +1.0 964,166 - -0.8 964,166 - +0.6 964,166 - -1.0 964,170 + +1.0 964,170 + -1.1 964,180 + -1.5 964,180 + +1.6 964,180 + -2.0 964,181 - -0.3 964,186 + -0.3 964,186 + -0.3 964,186 + +0.4 964,186 + +0.6 964,186 + +0.0 964,187 - -0.0 964,187 - -1.0 964,187 - -2.0 964,187 - -0.1 964,247 + -2.0 964,247 + -0.5 964,247 + -1.3 964,248 - -0.2 964,248 - -2.0 964,248 - +0.5 964,249 + +1.8 964,249 + +1.4 964,249 + -1.1 964,249 + -1.1 964,249 + +1.0 964,249 + -3.1 964,250 - -1.0 964,250 - +0.8 964,250 - +0.0 964,250 - -1.1 964,318 + HGI48_RS04600 0.15 -1.8 964,322 + HGI48_RS04600 0.15 -0.2 964,322 + HGI48_RS04600 0.15 +0.0 964,322 + HGI48_RS04600 0.15 -0.1 964,322 + HGI48_RS04600 0.15 -1.0 964,322 + HGI48_RS04600 0.15 -1.5 964,322 + HGI48_RS04600 0.15 -2.0 964,323 - HGI48_RS04600 0.16 -1.3 964,323 - HGI48_RS04600 0.16 -0.2 964,323 - HGI48_RS04600 0.16 +0.7 964,323 - HGI48_RS04600 0.16 -0.8 964,323 - HGI48_RS04600 0.16 -0.1 964,323 - HGI48_RS04600 0.16 -1.5 964,323 - HGI48_RS04600 0.16 -0.5 964,324 + HGI48_RS04600 0.16 +0.0 964,324 + HGI48_RS04600 0.16 -1.8 964,325 - HGI48_RS04600 0.16 -0.3 964,325 - HGI48_RS04600 0.16 -0.3 964,356 + +1.5 964,356 + HGI48_RS04600 0.21 -2.4 964,356 + HGI48_RS04600 0.21 -2.0 964,356 + HGI48_RS04600 0.21 +1.5 964,356 + HGI48_RS04600 0.21 +0.0 964,356 + HGI48_RS04600 0.21 -1.6 964,356 + HGI48_RS04600 0.21 +0.3 964,357 - HGI48_RS04600 0.21 -1.5 964,357 - HGI48_RS04600 0.21 -0.8 964,357 - HGI48_RS04600 0.21 -0.3 964,357 - HGI48_RS04600 0.21 -0.5 964,357 - HGI48_RS04600 0.21 -0.9 964,357 - HGI48_RS04600 0.21 -1.8 964,357 - HGI48_RS04600 0.21 +0.6 964,358 + HGI48_RS04600 0.21 +0.2 964,358 + HGI48_RS04600 0.21 -0.4 964,359 - HGI48_RS04600 0.21 +0.3 964,390 - HGI48_RS04600 0.26 +1.2 964,390 - HGI48_RS04600 0.26 -1.5 964,453 + HGI48_RS04600 0.36 -3.1 964,472 + HGI48_RS04600 0.39 -0.8 964,473 - HGI48_RS04600 0.40 -0.9 964,475 + HGI48_RS04600 0.40 -0.7 964,475 + HGI48_RS04600 0.40 +0.0 964,498 + HGI48_RS04600 0.44 -0.3 964,571 + HGI48_RS04600 0.55 +0.5 964,571 + HGI48_RS04600 0.55 -1.8 964,571 + HGI48_RS04600 0.55 -0.5 964,571 + HGI48_RS04600 0.55 -2.0 964,571 + HGI48_RS04600 0.55 -0.6 964,571 + HGI48_RS04600 0.55 -1.8 964,571 + HGI48_RS04600 0.55 +1.0 964,572 - +1.5 964,572 - HGI48_RS04600 0.55 +0.6 964,572 - HGI48_RS04600 0.55 +0.3 964,572 - HGI48_RS04600 0.55 -1.1 964,572 - HGI48_RS04600 0.55 -0.4 964,572 - HGI48_RS04600 0.55 -0.4 964,572 - HGI48_RS04600 0.55 -0.5 964,613 - HGI48_RS04600 0.62 -0.3 964,643 + HGI48_RS04600 0.67 -0.6 964,643 + HGI48_RS04600 0.67 +0.2 964,643 + HGI48_RS04600 0.67 +0.0 964,673 - HGI48_RS04600 0.72 -0.5 964,686 + HGI48_RS04600 0.74 -1.5 964,686 + HGI48_RS04600 0.74 +0.1 964,686 + HGI48_RS04600 0.74 -1.8 964,687 - HGI48_RS04600 0.74 -1.4 964,718 + HGI48_RS04600 0.79 -1.3 964,750 + HGI48_RS04600 0.84 -2.0 964,750 + HGI48_RS04600 0.84 -0.5 964,750 + HGI48_RS04600 0.84 -0.1 964,750 + HGI48_RS04600 0.84 -0.3 964,750 + HGI48_RS04600 0.84 -1.3 964,750 + HGI48_RS04600 0.84 +0.0 964,750 + HGI48_RS04600 0.84 -0.8 964,751 - HGI48_RS04600 0.84 -0.4 964,751 - HGI48_RS04600 0.84 -0.8 964,751 - HGI48_RS04600 0.84 -0.6 964,751 - HGI48_RS04600 0.84 +0.6 964,751 - HGI48_RS04600 0.84 -0.5 964,809 + -0.4 964,809 + +0.0 964,809 + -1.5 964,809 + -0.3 964,810 - -0.5 964,810 - +0.6 964,810 - -0.5 964,850 + -0.1 964,850 + +0.3 964,850 + +0.0 964,850 + -1.8 964,850 + -0.5 964,851 - -3.2 964,894 + -1.0 964,956 + -1.1 964,975 - -0.3 965,363 + +1.0 965,364 - HGI48_RS04605 0.36 +0.8 965,394 + HGI48_RS04605 0.39 -1.5 965,394 + HGI48_RS04605 0.39 -0.4 965,394 + -0.5 965,394 + HGI48_RS04605 0.39 +1.0 965,394 + HGI48_RS04605 0.39 +0.8 965,394 + HGI48_RS04605 0.39 -0.3 965,394 + HGI48_RS04605 0.39 -1.3 965,394 + HGI48_RS04605 0.39 -1.0 965,395 - HGI48_RS04605 0.39 -0.8 965,395 - HGI48_RS04605 0.39 -0.8 965,395 - HGI48_RS04605 0.39 +0.7 965,637 + HGI48_RS04605 0.61 +0.8 965,637 + HGI48_RS04605 0.61 -1.8 965,667 + HGI48_RS04605 0.64 +0.0 965,667 + HGI48_RS04605 0.64 -0.2 965,668 - HGI48_RS04605 0.64 -0.8 965,668 - HGI48_RS04605 0.64 -1.8 965,748 + HGI48_RS04605 0.71 -2.3 965,748 + HGI48_RS04605 0.71 -0.5 965,749 - HGI48_RS04605 0.71 -0.3 965,749 - HGI48_RS04605 0.71 -0.3 965,839 - HGI48_RS04605 0.80 -1.4 965,839 - HGI48_RS04605 0.80 -1.4 965,839 - HGI48_RS04605 0.80 +0.7 965,904 + HGI48_RS04605 0.86 +0.4 966,111 + -0.2 966,112 - -1.8 966,112 - -0.4 966,112 - -1.4 966,115 + -0.3 966,116 - -0.5 966,116 - +0.0 966,316 + HGI48_RS04610 0.14 +0.6 966,316 + HGI48_RS04610 0.14 -1.5 966,316 + HGI48_RS04610 0.14 +1.3 966,316 + HGI48_RS04610 0.14 -2.7 966,333 - HGI48_RS04610 0.16 +0.6 966,333 - HGI48_RS04610 0.16 -0.1 966,372 + HGI48_RS04610 0.20 +1.5 966,372 + HGI48_RS04610 0.20 +2.4 966,372 + HGI48_RS04610 0.20 +0.7 966,372 + HGI48_RS04610 0.20 +0.3 966,372 + HGI48_RS04610 0.20 +0.0 966,372 + HGI48_RS04610 0.20 -1.1 966,373 - HGI48_RS04610 0.20 +0.0 966,373 - HGI48_RS04610 0.20 -2.1 966,373 - HGI48_RS04610 0.20 -2.0 966,373 - HGI48_RS04610 0.20 +0.3 966,373 - HGI48_RS04610 0.20 +0.6 966,373 - +0.0 966,427 + +0.5 966,428 - +0.0 966,497 + +0.0 966,498 - HGI48_RS04610 0.33 +0.3 966,560 + HGI48_RS04610 0.40 -0.4 966,561 - HGI48_RS04610 0.40 -1.1 966,691 - HGI48_RS04610 0.53 -0.8 966,763 - HGI48_RS04610 0.61 +0.2 966,792 + HGI48_RS04610 0.64 -0.4 966,813 - HGI48_RS04610 0.66 +0.6 966,960 + HGI48_RS04610 0.82 +1.0 966,960 + +0.0 966,960 + HGI48_RS04610 0.82 -1.3 966,960 + HGI48_RS04610 0.82 -0.7 966,961 - HGI48_RS04610 0.82 -1.0 966,961 - HGI48_RS04610 0.82 +0.0 966,961 - HGI48_RS04610 0.82 -1.5 966,961 - HGI48_RS04610 0.82 -0.8 966,980 + HGI48_RS04610 0.84 +0.0 966,984 + HGI48_RS04610 0.84 +0.2 966,994 - HGI48_RS04610 0.85 -0.2 966,994 - HGI48_RS04610 0.85 -0.3 966,994 - HGI48_RS04610 0.85 +0.5
Or see this region's nucleotide sequence