Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04515 and HGI48_RS04520 are separated by 98 nucleotides HGI48_RS04520 and HGI48_RS04525 are separated by 30 nucleotides HGI48_RS04525 and HGI48_RS04530 are separated by 62 nucleotides HGI48_RS04530 and HGI48_RS04535 are separated by 77 nucleotides
HGI48_RS04515: HGI48_RS04515 - DNA-3-methyladenine glycosylase 2 family protein, at 947,079 to 947,753
_RS04515
HGI48_RS04520: HGI48_RS04520 - DNA oxidative demethylase AlkB, at 947,852 to 948,505
_RS04520
HGI48_RS04525: HGI48_RS04525 - FAD-dependent oxidoreductase, at 948,536 to 950,107
_RS04525
HGI48_RS04530: HGI48_RS04530 - FMN-binding protein, at 950,170 to 950,520
_RS04530
HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977
_RS04535
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.621 kb on - strand, within HGI48_RS04515 at 947.655 kb on - strand, within HGI48_RS04515 at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand at 948.025 kb on + strand, within HGI48_RS04520 at 948.026 kb on - strand at 948.026 kb on - strand, within HGI48_RS04520 at 948.046 kb on + strand, within HGI48_RS04520 at 948.046 kb on + strand, within HGI48_RS04520 at 948.047 kb on - strand, within HGI48_RS04520 at 948.047 kb on - strand, within HGI48_RS04520 at 948.092 kb on + strand, within HGI48_RS04520 at 948.344 kb on - strand, within HGI48_RS04520 at 948.413 kb on + strand, within HGI48_RS04520 at 948.413 kb on + strand, within HGI48_RS04520 at 948.413 kb on + strand at 948.413 kb on + strand, within HGI48_RS04520 at 948.414 kb on - strand, within HGI48_RS04520 at 948.414 kb on - strand, within HGI48_RS04520 at 948.416 kb on + strand, within HGI48_RS04520 at 948.417 kb on - strand, within HGI48_RS04520 at 948.481 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.648 kb on + strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.678 kb on + strand at 948.678 kb on + strand at 948.679 kb on - strand at 948.751 kb on + strand, within HGI48_RS04525 at 948.783 kb on + strand, within HGI48_RS04525 at 948.813 kb on + strand at 948.814 kb on - strand, within HGI48_RS04525 at 949.037 kb on + strand, within HGI48_RS04525 at 949.037 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand at 949.092 kb on + strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.142 kb on - strand at 949.162 kb on + strand, within HGI48_RS04525 at 949.194 kb on + strand, within HGI48_RS04525 at 949.237 kb on - strand, within HGI48_RS04525 at 949.237 kb on - strand, within HGI48_RS04525 at 949.237 kb on - strand at 949.237 kb on - strand, within HGI48_RS04525 at 949.258 kb on - strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.368 kb on - strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.429 kb on + strand, within HGI48_RS04525 at 949.437 kb on - strand, within HGI48_RS04525 at 949.511 kb on - strand, within HGI48_RS04525 at 949.532 kb on - strand, within HGI48_RS04525 at 949.578 kb on + strand at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.647 kb on + strand, within HGI48_RS04525 at 949.648 kb on - strand, within HGI48_RS04525 at 949.746 kb on + strand, within HGI48_RS04525 at 949.747 kb on - strand, within HGI48_RS04525 at 949.785 kb on - strand, within HGI48_RS04525 at 949.912 kb on + strand, within HGI48_RS04525 at 950.002 kb on + strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.073 kb on - strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.107 kb on + strand at 950.110 kb on + strand at 950.110 kb on + strand at 950.110 kb on + strand at 950.111 kb on - strand at 950.127 kb on - strand at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.374 kb on + strand, within HGI48_RS04530 at 950.375 kb on - strand, within HGI48_RS04530 at 950.375 kb on - strand, within HGI48_RS04530 at 950.426 kb on + strand at 950.521 kb on - strand at 950.551 kb on + strand at 950.551 kb on + strand at 950.566 kb on + strand at 950.566 kb on + strand at 950.567 kb on - strand at 950.567 kb on - strand at 950.569 kb on + strand at 950.616 kb on + strand at 950.617 kb on - strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.619 kb on + strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 950.620 kb on - strand at 951.096 kb on - strand, within HGI48_RS04535
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 947,547 + HGI48_RS04515 0.69 +0.5 947,547 + +0.5 947,547 + HGI48_RS04515 0.69 -1.0 947,547 + HGI48_RS04515 0.69 -2.1 947,548 - HGI48_RS04515 0.69 -1.4 947,548 - HGI48_RS04515 0.69 +0.3 947,548 - HGI48_RS04515 0.69 -1.3 947,548 - HGI48_RS04515 0.69 +0.7 947,620 + HGI48_RS04515 0.80 -1.0 947,620 + HGI48_RS04515 0.80 -0.8 947,621 - HGI48_RS04515 0.80 +0.8 947,655 - HGI48_RS04515 0.85 -0.1 947,767 + -0.4 947,767 + +0.0 947,767 + -1.4 947,767 + -2.0 947,767 + -0.8 947,768 - -1.0 947,768 - -0.8 947,768 - -1.2 947,768 - -1.1 947,768 - -1.2 947,768 - -0.2 947,768 - -0.3 947,768 - +0.0 947,814 + -0.8 947,814 + +1.0 947,814 + +1.0 947,814 + -1.5 947,814 + +0.7 947,814 + -1.0 947,814 + +0.4 947,814 + -1.8 947,814 + -0.5 947,814 + -0.6 947,814 + +0.0 947,814 + +1.0 947,814 + -2.1 947,814 + +1.0 947,814 + +0.3 947,815 - -0.6 947,815 - -0.5 947,815 - -1.5 947,815 - -1.5 947,815 - +0.0 947,815 - -0.1 947,815 - +0.5 947,815 - +0.3 947,815 - -1.1 947,816 + -2.0 947,816 + -1.1 947,816 + -0.5 947,816 + -0.5 947,816 + -1.3 947,817 - -0.5 947,817 - -1.3 947,817 - -0.8 948,025 + HGI48_RS04520 0.26 -1.0 948,026 - +1.6 948,026 - HGI48_RS04520 0.27 -0.4 948,046 + HGI48_RS04520 0.30 -1.8 948,046 + HGI48_RS04520 0.30 -2.8 948,047 - HGI48_RS04520 0.30 +0.6 948,047 - HGI48_RS04520 0.30 -2.0 948,092 + HGI48_RS04520 0.37 +0.3 948,344 - HGI48_RS04520 0.75 -1.3 948,413 + HGI48_RS04520 0.86 -0.3 948,413 + HGI48_RS04520 0.86 -2.0 948,413 + -0.5 948,413 + HGI48_RS04520 0.86 -0.5 948,414 - HGI48_RS04520 0.86 -0.5 948,414 - HGI48_RS04520 0.86 +4.2 948,416 + HGI48_RS04520 0.86 +0.3 948,417 - HGI48_RS04520 0.86 -1.1 948,481 + -1.3 948,636 + -0.5 948,636 + -0.5 948,636 + -1.8 948,636 + +0.6 948,636 + +0.2 948,636 + -1.0 948,637 - -0.3 948,637 - +2.0 948,637 - -0.3 948,637 - -0.1 948,648 + -1.1 948,649 - -1.5 948,649 - +0.0 948,649 - -2.3 948,649 - -1.5 948,649 - +0.4 948,678 + -0.3 948,678 + +0.7 948,679 - -1.5 948,751 + HGI48_RS04525 0.14 -0.6 948,783 + HGI48_RS04525 0.16 -0.2 948,813 + -0.5 948,814 - HGI48_RS04525 0.18 -0.1 949,037 + HGI48_RS04525 0.32 -0.9 949,037 + HGI48_RS04525 0.32 -1.7 949,092 + HGI48_RS04525 0.35 -0.5 949,092 + HGI48_RS04525 0.35 +0.2 949,092 + HGI48_RS04525 0.35 -0.2 949,092 + +1.0 949,092 + HGI48_RS04525 0.35 -0.8 949,093 - HGI48_RS04525 0.35 -1.5 949,093 - HGI48_RS04525 0.35 +0.9 949,093 - HGI48_RS04525 0.35 -0.0 949,142 - -0.5 949,162 + HGI48_RS04525 0.40 -1.3 949,194 + HGI48_RS04525 0.42 -2.1 949,237 - HGI48_RS04525 0.45 -1.5 949,237 - HGI48_RS04525 0.45 -1.5 949,237 - -0.5 949,237 - HGI48_RS04525 0.45 -1.9 949,258 - HGI48_RS04525 0.46 +0.6 949,265 + HGI48_RS04525 0.46 -0.3 949,265 + HGI48_RS04525 0.46 +0.1 949,265 + HGI48_RS04525 0.46 -0.8 949,265 + HGI48_RS04525 0.46 -1.0 949,265 + HGI48_RS04525 0.46 -1.8 949,265 + HGI48_RS04525 0.46 -1.3 949,265 + +0.5 949,265 + HGI48_RS04525 0.46 -1.0 949,265 + HGI48_RS04525 0.46 -0.6 949,266 - HGI48_RS04525 0.46 +0.8 949,266 - HGI48_RS04525 0.46 -1.2 949,266 - HGI48_RS04525 0.46 +0.6 949,266 - HGI48_RS04525 0.46 -0.5 949,266 - HGI48_RS04525 0.46 -0.5 949,266 - HGI48_RS04525 0.46 +0.4 949,368 - HGI48_RS04525 0.53 +0.8 949,371 + HGI48_RS04525 0.53 -1.3 949,371 + HGI48_RS04525 0.53 +0.7 949,371 + HGI48_RS04525 0.53 -0.5 949,371 + HGI48_RS04525 0.53 +1.3 949,371 + HGI48_RS04525 0.53 +0.0 949,371 + HGI48_RS04525 0.53 -0.4 949,371 + HGI48_RS04525 0.53 -1.3 949,371 + HGI48_RS04525 0.53 -1.0 949,371 + HGI48_RS04525 0.53 -0.8 949,429 + HGI48_RS04525 0.57 -1.0 949,437 - HGI48_RS04525 0.57 -0.3 949,511 - HGI48_RS04525 0.62 -0.8 949,532 - HGI48_RS04525 0.63 +0.3 949,578 + -0.5 949,647 + HGI48_RS04525 0.71 +0.0 949,647 + HGI48_RS04525 0.71 -0.2 949,647 + HGI48_RS04525 0.71 -1.8 949,647 + HGI48_RS04525 0.71 -2.0 949,648 - HGI48_RS04525 0.71 -0.5 949,746 + HGI48_RS04525 0.77 +0.6 949,747 - HGI48_RS04525 0.77 -1.5 949,785 - HGI48_RS04525 0.79 +3.7 949,912 + HGI48_RS04525 0.88 +1.4 950,002 + -2.8 950,073 - -1.5 950,073 - -0.8 950,073 - -1.5 950,073 - -1.8 950,107 + -1.5 950,107 + +0.0 950,107 + -2.4 950,107 + +0.0 950,107 + -1.1 950,110 + -0.5 950,110 + +1.3 950,110 + +0.0 950,111 - +0.0 950,127 - -0.5 950,374 + HGI48_RS04530 0.58 -1.0 950,374 + HGI48_RS04530 0.58 -1.4 950,374 + HGI48_RS04530 0.58 -1.1 950,374 + HGI48_RS04530 0.58 -1.0 950,374 + HGI48_RS04530 0.58 +0.7 950,375 - HGI48_RS04530 0.58 -1.0 950,375 - HGI48_RS04530 0.58 -0.7 950,426 + +1.5 950,521 - -1.5 950,551 + -2.3 950,551 + -0.8 950,566 + -0.3 950,566 + +0.0 950,567 - +0.6 950,567 - +0.0 950,569 + +0.0 950,616 + -1.8 950,617 - -0.3 950,619 + -1.0 950,619 + -0.3 950,619 + -0.2 950,619 + -0.9 950,619 + -0.5 950,619 + +1.3 950,619 + +1.0 950,619 + -0.1 950,619 + -0.7 950,620 - -1.5 950,620 - -2.9 950,620 - -1.0 950,620 - -0.5 950,620 - -0.7 950,620 - -0.8 950,620 - -0.3 950,620 - +0.6 950,620 - -1.0 951,096 - HGI48_RS04535 0.36 -1.0
Or see this region's nucleotide sequence