Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04510 and HGI48_RS04515 are separated by 91 nucleotides HGI48_RS04515 and HGI48_RS04520 are separated by 98 nucleotides HGI48_RS04520 and HGI48_RS04525 are separated by 30 nucleotides
HGI48_RS04510: HGI48_RS04510 - multidrug/biocide efflux PACE transporter, at 946,523 to 946,987
_RS04510
HGI48_RS04515: HGI48_RS04515 - DNA-3-methyladenine glycosylase 2 family protein, at 947,079 to 947,753
_RS04515
HGI48_RS04520: HGI48_RS04520 - DNA oxidative demethylase AlkB, at 947,852 to 948,505
_RS04520
HGI48_RS04525: HGI48_RS04525 - FAD-dependent oxidoreductase, at 948,536 to 950,107
_RS04525
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 946.855 kb on + strand, within HGI48_RS04510 at 946.855 kb on + strand, within HGI48_RS04510 at 946.856 kb on - strand, within HGI48_RS04510 at 946.914 kb on - strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.925 kb on + strand, within HGI48_RS04510 at 946.925 kb on + strand at 946.925 kb on + strand, within HGI48_RS04510 at 946.925 kb on + strand, within HGI48_RS04510 at 946.926 kb on - strand, within HGI48_RS04510 at 946.926 kb on - strand, within HGI48_RS04510 at 946.937 kb on + strand, within HGI48_RS04510 at 946.974 kb on + strand at 946.974 kb on + strand at 946.974 kb on + strand at 946.974 kb on + strand at 947.140 kb on + strand at 947.141 kb on - strand at 947.199 kb on - strand, within HGI48_RS04515 at 947.222 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.231 kb on - strand, within HGI48_RS04515 at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.621 kb on - strand, within HGI48_RS04515 at 947.655 kb on - strand, within HGI48_RS04515 at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand at 948.025 kb on + strand, within HGI48_RS04520 at 948.026 kb on - strand at 948.026 kb on - strand, within HGI48_RS04520 at 948.046 kb on + strand, within HGI48_RS04520 at 948.046 kb on + strand, within HGI48_RS04520 at 948.047 kb on - strand, within HGI48_RS04520 at 948.047 kb on - strand, within HGI48_RS04520 at 948.092 kb on + strand, within HGI48_RS04520 at 948.344 kb on - strand, within HGI48_RS04520 at 948.413 kb on + strand, within HGI48_RS04520 at 948.413 kb on + strand, within HGI48_RS04520 at 948.413 kb on + strand at 948.413 kb on + strand, within HGI48_RS04520 at 948.414 kb on - strand, within HGI48_RS04520 at 948.414 kb on - strand, within HGI48_RS04520 at 948.416 kb on + strand, within HGI48_RS04520 at 948.417 kb on - strand, within HGI48_RS04520 at 948.481 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.636 kb on + strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.637 kb on - strand at 948.648 kb on + strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.649 kb on - strand at 948.678 kb on + strand at 948.678 kb on + strand at 948.679 kb on - strand at 948.751 kb on + strand, within HGI48_RS04525 at 948.783 kb on + strand, within HGI48_RS04525 at 948.813 kb on + strand at 948.814 kb on - strand, within HGI48_RS04525 at 949.037 kb on + strand, within HGI48_RS04525 at 949.037 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand, within HGI48_RS04525 at 949.092 kb on + strand at 949.092 kb on + strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.093 kb on - strand, within HGI48_RS04525 at 949.142 kb on - strand at 949.162 kb on + strand, within HGI48_RS04525 at 949.194 kb on + strand, within HGI48_RS04525 at 949.237 kb on - strand, within HGI48_RS04525 at 949.237 kb on - strand, within HGI48_RS04525 at 949.237 kb on - strand at 949.237 kb on - strand, within HGI48_RS04525 at 949.258 kb on - strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand at 949.265 kb on + strand, within HGI48_RS04525 at 949.265 kb on + strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.266 kb on - strand, within HGI48_RS04525 at 949.368 kb on - strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.371 kb on + strand, within HGI48_RS04525 at 949.429 kb on + strand, within HGI48_RS04525 at 949.437 kb on - strand, within HGI48_RS04525
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 946,855 + HGI48_RS04510 0.71 -0.1 946,855 + HGI48_RS04510 0.71 +1.1 946,856 - HGI48_RS04510 0.72 +0.1 946,914 - HGI48_RS04510 0.84 +1.6 946,915 + HGI48_RS04510 0.84 +0.1 946,915 + HGI48_RS04510 0.84 +0.1 946,915 + HGI48_RS04510 0.84 +0.6 946,916 - HGI48_RS04510 0.85 +0.9 946,916 - HGI48_RS04510 0.85 -0.4 946,916 - HGI48_RS04510 0.85 -1.9 946,916 - HGI48_RS04510 0.85 -0.4 946,916 - HGI48_RS04510 0.85 -2.6 946,916 - HGI48_RS04510 0.85 +0.3 946,925 + HGI48_RS04510 0.86 -1.9 946,925 + +2.4 946,925 + HGI48_RS04510 0.86 -0.1 946,925 + HGI48_RS04510 0.86 -1.5 946,926 - HGI48_RS04510 0.87 -0.3 946,926 - HGI48_RS04510 0.87 -0.9 946,937 + HGI48_RS04510 0.89 -0.5 946,974 + +0.8 946,974 + +0.1 946,974 + +0.3 946,974 + -0.4 947,140 + +1.0 947,141 - +0.0 947,199 - HGI48_RS04515 0.18 -0.5 947,222 + HGI48_RS04515 0.21 -2.3 947,224 + HGI48_RS04515 0.21 -1.5 947,224 + HGI48_RS04515 0.21 -0.3 947,224 + HGI48_RS04515 0.21 +0.8 947,224 + HGI48_RS04515 0.21 -2.3 947,225 - HGI48_RS04515 0.22 -0.3 947,225 - +1.0 947,225 - HGI48_RS04515 0.22 -1.5 947,225 - HGI48_RS04515 0.22 -0.2 947,225 - HGI48_RS04515 0.22 -1.0 947,225 - HGI48_RS04515 0.22 +0.5 947,231 - HGI48_RS04515 0.23 -0.6 947,547 + HGI48_RS04515 0.69 +0.5 947,547 + +0.5 947,547 + HGI48_RS04515 0.69 -1.0 947,547 + HGI48_RS04515 0.69 -2.1 947,548 - HGI48_RS04515 0.69 -1.4 947,548 - HGI48_RS04515 0.69 +0.3 947,548 - HGI48_RS04515 0.69 -1.3 947,548 - HGI48_RS04515 0.69 +0.7 947,620 + HGI48_RS04515 0.80 -1.0 947,620 + HGI48_RS04515 0.80 -0.8 947,621 - HGI48_RS04515 0.80 +0.8 947,655 - HGI48_RS04515 0.85 -0.1 947,767 + -0.4 947,767 + +0.0 947,767 + -1.4 947,767 + -2.0 947,767 + -0.8 947,768 - -1.0 947,768 - -0.8 947,768 - -1.2 947,768 - -1.1 947,768 - -1.2 947,768 - -0.2 947,768 - -0.3 947,768 - +0.0 947,814 + -0.8 947,814 + +1.0 947,814 + +1.0 947,814 + -1.5 947,814 + +0.7 947,814 + -1.0 947,814 + +0.4 947,814 + -1.8 947,814 + -0.5 947,814 + -0.6 947,814 + +0.0 947,814 + +1.0 947,814 + -2.1 947,814 + +1.0 947,814 + +0.3 947,815 - -0.6 947,815 - -0.5 947,815 - -1.5 947,815 - -1.5 947,815 - +0.0 947,815 - -0.1 947,815 - +0.5 947,815 - +0.3 947,815 - -1.1 947,816 + -2.0 947,816 + -1.1 947,816 + -0.5 947,816 + -0.5 947,816 + -1.3 947,817 - -0.5 947,817 - -1.3 947,817 - -0.8 948,025 + HGI48_RS04520 0.26 -1.0 948,026 - +1.6 948,026 - HGI48_RS04520 0.27 -0.4 948,046 + HGI48_RS04520 0.30 -1.8 948,046 + HGI48_RS04520 0.30 -2.8 948,047 - HGI48_RS04520 0.30 +0.6 948,047 - HGI48_RS04520 0.30 -2.0 948,092 + HGI48_RS04520 0.37 +0.3 948,344 - HGI48_RS04520 0.75 -1.3 948,413 + HGI48_RS04520 0.86 -0.3 948,413 + HGI48_RS04520 0.86 -2.0 948,413 + -0.5 948,413 + HGI48_RS04520 0.86 -0.5 948,414 - HGI48_RS04520 0.86 -0.5 948,414 - HGI48_RS04520 0.86 +4.2 948,416 + HGI48_RS04520 0.86 +0.3 948,417 - HGI48_RS04520 0.86 -1.1 948,481 + -1.3 948,636 + -0.5 948,636 + -0.5 948,636 + -1.8 948,636 + +0.6 948,636 + +0.2 948,636 + -1.0 948,637 - -0.3 948,637 - +2.0 948,637 - -0.3 948,637 - -0.1 948,648 + -1.1 948,649 - -1.5 948,649 - +0.0 948,649 - -2.3 948,649 - -1.5 948,649 - +0.4 948,678 + -0.3 948,678 + +0.7 948,679 - -1.5 948,751 + HGI48_RS04525 0.14 -0.6 948,783 + HGI48_RS04525 0.16 -0.2 948,813 + -0.5 948,814 - HGI48_RS04525 0.18 -0.1 949,037 + HGI48_RS04525 0.32 -0.9 949,037 + HGI48_RS04525 0.32 -1.7 949,092 + HGI48_RS04525 0.35 -0.5 949,092 + HGI48_RS04525 0.35 +0.2 949,092 + HGI48_RS04525 0.35 -0.2 949,092 + +1.0 949,092 + HGI48_RS04525 0.35 -0.8 949,093 - HGI48_RS04525 0.35 -1.5 949,093 - HGI48_RS04525 0.35 +0.9 949,093 - HGI48_RS04525 0.35 -0.0 949,142 - -0.5 949,162 + HGI48_RS04525 0.40 -1.3 949,194 + HGI48_RS04525 0.42 -2.1 949,237 - HGI48_RS04525 0.45 -1.5 949,237 - HGI48_RS04525 0.45 -1.5 949,237 - -0.5 949,237 - HGI48_RS04525 0.45 -1.9 949,258 - HGI48_RS04525 0.46 +0.6 949,265 + HGI48_RS04525 0.46 -0.3 949,265 + HGI48_RS04525 0.46 +0.1 949,265 + HGI48_RS04525 0.46 -0.8 949,265 + HGI48_RS04525 0.46 -1.0 949,265 + HGI48_RS04525 0.46 -1.8 949,265 + HGI48_RS04525 0.46 -1.3 949,265 + +0.5 949,265 + HGI48_RS04525 0.46 -1.0 949,265 + HGI48_RS04525 0.46 -0.6 949,266 - HGI48_RS04525 0.46 +0.8 949,266 - HGI48_RS04525 0.46 -1.2 949,266 - HGI48_RS04525 0.46 +0.6 949,266 - HGI48_RS04525 0.46 -0.5 949,266 - HGI48_RS04525 0.46 -0.5 949,266 - HGI48_RS04525 0.46 +0.4 949,368 - HGI48_RS04525 0.53 +0.8 949,371 + HGI48_RS04525 0.53 -1.3 949,371 + HGI48_RS04525 0.53 +0.7 949,371 + HGI48_RS04525 0.53 -0.5 949,371 + HGI48_RS04525 0.53 +1.3 949,371 + HGI48_RS04525 0.53 +0.0 949,371 + HGI48_RS04525 0.53 -0.4 949,371 + HGI48_RS04525 0.53 -1.3 949,371 + HGI48_RS04525 0.53 -1.0 949,371 + HGI48_RS04525 0.53 -0.8 949,429 + HGI48_RS04525 0.57 -1.0 949,437 - HGI48_RS04525 0.57 -0.3
Or see this region's nucleotide sequence