Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04420 and HGI48_RS04425 are separated by 171 nucleotides HGI48_RS04425 and HGI48_RS04430 are separated by 264 nucleotides
HGI48_RS04420: HGI48_RS04420 - HAMP domain-containing protein, at 925,024 to 926,442
_RS04420
HGI48_RS04425: HGI48_RS04425 - enoyl-CoA hydratase/isomerase family protein, at 926,614 to 927,573
_RS04425
HGI48_RS04430: HGI48_RS04430 - helix-turn-helix transcriptional regulator, at 927,838 to 928,401
_RS04430
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 925.721 kb on + strand, within HGI48_RS04420 at 925.722 kb on - strand, within HGI48_RS04420 at 925.750 kb on - strand at 925.750 kb on - strand, within HGI48_RS04420 at 925.991 kb on - strand, within HGI48_RS04420 at 926.038 kb on + strand, within HGI48_RS04420 at 926.087 kb on - strand, within HGI48_RS04420 at 926.095 kb on + strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand, within HGI48_RS04420 at 926.096 kb on - strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.455 kb on + strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.456 kb on - strand at 926.525 kb on + strand at 926.526 kb on - strand at 926.526 kb on - strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.539 kb on + strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.540 kb on - strand at 926.542 kb on - strand at 926.542 kb on - strand at 926.555 kb on + strand at 926.555 kb on + strand at 926.556 kb on - strand at 926.560 kb on + strand at 926.560 kb on + strand at 926.560 kb on + strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.561 kb on - strand at 926.571 kb on + strand at 926.571 kb on + strand at 926.572 kb on - strand at 926.687 kb on + strand at 926.776 kb on + strand, within HGI48_RS04425 at 926.776 kb on + strand, within HGI48_RS04425 at 926.777 kb on - strand at 926.830 kb on + strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.831 kb on - strand, within HGI48_RS04425 at 926.866 kb on + strand, within HGI48_RS04425 at 926.866 kb on + strand, within HGI48_RS04425 at 926.910 kb on + strand at 926.910 kb on + strand, within HGI48_RS04425 at 926.910 kb on + strand, within HGI48_RS04425 at 926.911 kb on - strand, within HGI48_RS04425 at 926.911 kb on - strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.916 kb on + strand, within HGI48_RS04425 at 926.917 kb on - strand at 926.917 kb on - strand, within HGI48_RS04425 at 926.917 kb on - strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.018 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.078 kb on + strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.079 kb on - strand, within HGI48_RS04425 at 927.128 kb on + strand, within HGI48_RS04425 at 927.128 kb on + strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand, within HGI48_RS04425 at 927.129 kb on - strand at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.194 kb on + strand, within HGI48_RS04425 at 927.195 kb on - strand, within HGI48_RS04425 at 927.210 kb on + strand, within HGI48_RS04425 at 927.211 kb on - strand, within HGI48_RS04425 at 927.275 kb on + strand, within HGI48_RS04425 at 927.281 kb on + strand, within HGI48_RS04425 at 927.355 kb on + strand, within HGI48_RS04425 at 927.356 kb on - strand, within HGI48_RS04425 at 927.361 kb on + strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.362 kb on - strand, within HGI48_RS04425 at 927.410 kb on - strand, within HGI48_RS04425 at 927.535 kb on - strand at 927.543 kb on + strand at 927.554 kb on - strand at 927.554 kb on - strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.577 kb on + strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.578 kb on - strand at 927.579 kb on + strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.580 kb on - strand at 927.663 kb on - strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.790 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.831 kb on - strand at 928.075 kb on + strand, within HGI48_RS04430 at 928.075 kb on + strand, within HGI48_RS04430 at 928.076 kb on - strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.118 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.146 kb on - strand, within HGI48_RS04430 at 928.146 kb on - strand at 928.146 kb on - strand at 928.146 kb on - strand, within HGI48_RS04430 at 928.151 kb on + strand at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.261 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.420 kb on - strand at 928.422 kb on + strand at 928.422 kb on + strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.430 kb on + strand at 928.476 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.481 kb on - strand at 928.481 kb on - strand at 928.533 kb on + strand at 928.533 kb on + strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 925,721 + HGI48_RS04420 0.49 +0.1 925,722 - HGI48_RS04420 0.49 -0.3 925,750 - +0.5 925,750 - HGI48_RS04420 0.51 +0.1 925,991 - HGI48_RS04420 0.68 -1.4 926,038 + HGI48_RS04420 0.71 -0.9 926,087 - HGI48_RS04420 0.75 -0.5 926,095 + HGI48_RS04420 0.75 -0.9 926,096 - HGI48_RS04420 0.76 +1.3 926,096 - HGI48_RS04420 0.76 -1.3 926,096 - HGI48_RS04420 0.76 -1.4 926,096 - -0.5 926,455 + -2.4 926,455 + -0.3 926,455 + -0.5 926,455 + -0.7 926,456 - +0.1 926,456 - +0.6 926,456 - -0.3 926,456 - -0.7 926,525 + -1.3 926,526 - -0.9 926,526 - +0.1 926,539 + -1.3 926,539 + +1.7 926,539 + -0.5 926,539 + -0.5 926,539 + -0.5 926,539 + +1.7 926,539 + -2.5 926,540 - +0.7 926,540 - -2.4 926,540 - -1.3 926,540 - +0.5 926,542 - +1.7 926,542 - -0.6 926,555 + -0.1 926,555 + -2.0 926,556 - -0.9 926,560 + -0.3 926,560 + +0.3 926,560 + +0.5 926,561 - +0.7 926,561 - +0.1 926,561 - +0.1 926,561 - -1.0 926,561 - +0.1 926,561 - -0.6 926,571 + -1.1 926,571 + -1.9 926,572 - +0.4 926,687 + -2.1 926,776 + HGI48_RS04425 0.17 -1.3 926,776 + HGI48_RS04425 0.17 -1.5 926,777 - +0.5 926,830 + HGI48_RS04425 0.23 +0.3 926,831 - HGI48_RS04425 0.23 -0.7 926,831 - HGI48_RS04425 0.23 +0.0 926,831 - HGI48_RS04425 0.23 -1.1 926,831 - HGI48_RS04425 0.23 +0.5 926,866 + HGI48_RS04425 0.26 -1.7 926,866 + HGI48_RS04425 0.26 +0.3 926,910 + -0.5 926,910 + HGI48_RS04425 0.31 -1.5 926,910 + HGI48_RS04425 0.31 +0.1 926,911 - HGI48_RS04425 0.31 +1.1 926,911 - HGI48_RS04425 0.31 -0.5 926,916 + HGI48_RS04425 0.31 -1.3 926,916 + HGI48_RS04425 0.31 -0.9 926,916 + HGI48_RS04425 0.31 -0.6 926,916 + HGI48_RS04425 0.31 -0.2 926,916 + HGI48_RS04425 0.31 -0.2 926,916 + HGI48_RS04425 0.31 +0.6 926,916 + HGI48_RS04425 0.31 +0.4 926,917 - -0.5 926,917 - HGI48_RS04425 0.32 -0.5 926,917 - HGI48_RS04425 0.32 +0.5 927,018 + HGI48_RS04425 0.42 -1.3 927,018 + HGI48_RS04425 0.42 -0.2 927,018 + HGI48_RS04425 0.42 -1.3 927,078 + HGI48_RS04425 0.48 +1.3 927,078 + HGI48_RS04425 0.48 +1.4 927,078 + HGI48_RS04425 0.48 -1.3 927,078 + HGI48_RS04425 0.48 +1.7 927,079 - HGI48_RS04425 0.48 -0.9 927,079 - HGI48_RS04425 0.48 -1.5 927,079 - HGI48_RS04425 0.48 -0.0 927,079 - HGI48_RS04425 0.48 -0.5 927,079 - HGI48_RS04425 0.48 -0.9 927,079 - HGI48_RS04425 0.48 +0.1 927,128 + HGI48_RS04425 0.54 +0.1 927,128 + HGI48_RS04425 0.54 -0.0 927,129 - HGI48_RS04425 0.54 +1.1 927,129 - HGI48_RS04425 0.54 -0.0 927,129 - HGI48_RS04425 0.54 -2.6 927,129 - HGI48_RS04425 0.54 -1.3 927,129 - HGI48_RS04425 0.54 -1.1 927,129 - +0.1 927,194 + HGI48_RS04425 0.60 -1.6 927,194 + HGI48_RS04425 0.60 -0.2 927,194 + HGI48_RS04425 0.60 -1.3 927,194 + HGI48_RS04425 0.60 -0.5 927,194 + HGI48_RS04425 0.60 -0.9 927,194 + HGI48_RS04425 0.60 -1.5 927,195 - HGI48_RS04425 0.61 -0.2 927,210 + HGI48_RS04425 0.62 -3.0 927,211 - HGI48_RS04425 0.62 +1.1 927,275 + HGI48_RS04425 0.69 +0.8 927,281 + HGI48_RS04425 0.69 -0.4 927,355 + HGI48_RS04425 0.77 -1.9 927,356 - HGI48_RS04425 0.77 +0.1 927,361 + HGI48_RS04425 0.78 +0.1 927,362 - HGI48_RS04425 0.78 -0.3 927,362 - HGI48_RS04425 0.78 +0.1 927,362 - HGI48_RS04425 0.78 +0.1 927,410 - HGI48_RS04425 0.83 -1.4 927,535 - +0.1 927,543 + +1.1 927,554 - -2.6 927,554 - -0.2 927,577 + -2.1 927,577 + -0.6 927,577 + -1.7 927,577 + -0.3 927,577 + -1.2 927,577 + -0.0 927,578 - -0.3 927,578 - +1.1 927,578 - -0.9 927,578 - +0.4 927,578 - -1.5 927,578 - -2.1 927,578 - +0.1 927,578 - -0.3 927,578 - -0.4 927,578 - -1.0 927,578 - -0.5 927,579 + +3.2 927,580 - -0.0 927,580 - -0.3 927,580 - +1.1 927,580 - +0.7 927,580 - -1.4 927,580 - -1.5 927,663 - -2.9 927,722 + -0.7 927,722 + -0.1 927,722 + -1.4 927,723 - +0.3 927,723 - -1.3 927,723 - +1.3 927,790 + -0.9 927,793 + -2.1 927,793 + +0.6 927,793 + -0.5 927,793 + +0.3 927,793 + -0.2 927,793 + -0.2 927,793 + +0.1 927,793 + +1.1 927,793 + +0.6 927,794 - -1.7 927,794 - -1.9 927,794 - -0.5 927,794 - -0.8 927,794 - +0.1 927,794 - +0.1 927,794 - -0.5 927,831 - -0.4 928,075 + HGI48_RS04430 0.42 +0.5 928,075 + HGI48_RS04430 0.42 +1.1 928,076 - HGI48_RS04430 0.42 -0.7 928,079 + HGI48_RS04430 0.43 +0.4 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + -0.5 928,079 + HGI48_RS04430 0.43 -1.3 928,079 + HGI48_RS04430 0.43 -0.8 928,079 + HGI48_RS04430 0.43 -1.3 928,079 + HGI48_RS04430 0.43 -0.5 928,079 + HGI48_RS04430 0.43 -0.4 928,079 + HGI48_RS04430 0.43 -0.8 928,079 + HGI48_RS04430 0.43 -1.3 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + HGI48_RS04430 0.43 -0.6 928,079 + HGI48_RS04430 0.43 -1.4 928,079 + -0.5 928,079 + HGI48_RS04430 0.43 -0.4 928,080 - HGI48_RS04430 0.43 -0.4 928,080 - HGI48_RS04430 0.43 -0.3 928,080 - -0.5 928,080 - HGI48_RS04430 0.43 -1.3 928,080 - HGI48_RS04430 0.43 -1.3 928,080 - HGI48_RS04430 0.43 +0.2 928,080 - HGI48_RS04430 0.43 +0.1 928,080 - HGI48_RS04430 0.43 -1.3 928,080 - HGI48_RS04430 0.43 -0.7 928,118 + HGI48_RS04430 0.50 -1.3 928,145 + HGI48_RS04430 0.54 -1.3 928,145 + HGI48_RS04430 0.54 -1.3 928,145 + HGI48_RS04430 0.54 -0.7 928,146 - HGI48_RS04430 0.55 +0.5 928,146 - +2.1 928,146 - -0.5 928,146 - HGI48_RS04430 0.55 +0.2 928,151 + -0.5 928,260 + HGI48_RS04430 0.75 -1.5 928,260 + HGI48_RS04430 0.75 -0.4 928,260 + HGI48_RS04430 0.75 +0.9 928,261 - +1.6 928,392 + -2.1 928,392 + -1.5 928,392 + -0.6 928,392 + +0.1 928,419 + -0.4 928,419 + -0.3 928,419 + -0.4 928,420 - -1.7 928,422 + -1.7 928,422 + -2.4 928,423 - +0.1 928,423 - +0.3 928,423 - -0.8 928,423 - -1.7 928,430 + -1.3 928,476 + -0.5 928,480 + -0.9 928,480 + +1.1 928,480 + +0.5 928,480 + -0.6 928,480 + -1.5 928,480 + -1.5 928,481 - -2.4 928,481 - +1.1 928,533 + -0.9 928,533 + -1.1 928,534 - -0.3 928,534 - -1.3 928,534 - -1.3 928,557 + +0.1
Or see this region's nucleotide sequence