Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04380

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04370 and HGI48_RS04375 are separated by 137 nucleotidesHGI48_RS04375 and HGI48_RS04380 are separated by 412 nucleotidesHGI48_RS04380 and HGI48_RS04385 are separated by 35 nucleotidesHGI48_RS04385 and HGI48_RS04390 are separated by 15 nucleotides HGI48_RS04370: HGI48_RS04370 - glycosyltransferase, at 915,953 to 917,227 _RS04370 HGI48_RS04375: HGI48_RS04375 - helix-turn-helix domain-containing protein, at 917,365 to 917,640 _RS04375 HGI48_RS04380: HGI48_RS04380 - GNAT family N-acetyltransferase, at 918,053 to 918,466 _RS04380 HGI48_RS04385: HGI48_RS04385 - LuxR family transcriptional regulator, at 918,502 to 919,191 _RS04385 HGI48_RS04390: HGI48_RS04390 - cytosine permease, at 919,207 to 920,502 _RS04390 Position (kb) 918 919Strain fitness (log2 ratio) -2 -1 0 1 2at 917.140 kb on + strandat 917.160 kb on + strandat 917.246 kb on + strandat 917.246 kb on + strandat 917.326 kb on + strandat 917.327 kb on - strandat 917.327 kb on - strandat 917.415 kb on + strand, within HGI48_RS04375at 917.415 kb on + strand, within HGI48_RS04375at 917.415 kb on + strand, within HGI48_RS04375at 917.432 kb on + strand, within HGI48_RS04375at 917.466 kb on + strand, within HGI48_RS04375at 917.470 kb on + strand, within HGI48_RS04375at 917.471 kb on - strand, within HGI48_RS04375at 917.483 kb on - strand, within HGI48_RS04375at 917.513 kb on + strand, within HGI48_RS04375at 917.514 kb on - strand, within HGI48_RS04375at 917.515 kb on + strand, within HGI48_RS04375at 917.516 kb on - strand, within HGI48_RS04375at 917.543 kb on - strand, within HGI48_RS04375at 917.633 kb on - strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.637 kb on - strandat 917.637 kb on - strandat 917.637 kb on - strandat 917.637 kb on - strandat 917.637 kb on - strandat 917.656 kb on - strandat 917.668 kb on + strandat 917.708 kb on + strandat 917.713 kb on + strandat 917.713 kb on + strandat 917.714 kb on - strandat 917.779 kb on - strandat 917.830 kb on - strandat 917.886 kb on - strandat 917.940 kb on + strandat 917.952 kb on + strandat 917.976 kb on - strandat 918.016 kb on - strandat 918.017 kb on + strandat 918.017 kb on + strandat 918.099 kb on - strandat 918.104 kb on - strand, within HGI48_RS04380at 918.144 kb on + strand, within HGI48_RS04380at 918.148 kb on + strand, within HGI48_RS04380at 918.165 kb on + strand, within HGI48_RS04380at 918.231 kb on + strand, within HGI48_RS04380at 918.232 kb on - strand, within HGI48_RS04380at 918.242 kb on + strand, within HGI48_RS04380at 918.242 kb on + strand, within HGI48_RS04380at 918.243 kb on - strandat 918.335 kb on - strand, within HGI48_RS04380at 918.335 kb on - strand, within HGI48_RS04380at 918.341 kb on + strand, within HGI48_RS04380at 918.341 kb on + strand, within HGI48_RS04380at 918.342 kb on - strand, within HGI48_RS04380at 918.342 kb on - strand, within HGI48_RS04380at 918.342 kb on - strand, within HGI48_RS04380at 918.350 kb on - strand, within HGI48_RS04380at 918.350 kb on - strand, within HGI48_RS04380at 918.356 kb on - strand, within HGI48_RS04380at 918.401 kb on + strand, within HGI48_RS04380at 918.420 kb on - strand, within HGI48_RS04380at 918.431 kb on + strandat 918.432 kb on - strandat 918.468 kb on - strandat 918.495 kb on + strandat 918.496 kb on - strandat 918.534 kb on + strandat 918.547 kb on - strandat 918.610 kb on + strand, within HGI48_RS04385at 918.610 kb on + strand, within HGI48_RS04385at 918.642 kb on + strand, within HGI48_RS04385at 918.643 kb on - strand, within HGI48_RS04385at 918.888 kb on + strandat 919.070 kb on - strand, within HGI48_RS04385at 919.078 kb on + strandat 919.203 kb on + strandat 919.203 kb on + strandat 919.204 kb on - strandat 919.293 kb on + strandat 919.293 kb on + strandat 919.317 kb on + strandat 919.317 kb on + strandat 919.317 kb on + strandat 919.318 kb on - strandat 919.318 kb on - strandat 919.421 kb on - strand, within HGI48_RS04390

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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917,140 + +0.5
917,160 + -1.2
917,246 + -1.4
917,246 + -1.7
917,326 + -2.4
917,327 - -0.5
917,327 - -1.5
917,415 + HGI48_RS04375 0.18 +0.6
917,415 + HGI48_RS04375 0.18 +0.9
917,415 + HGI48_RS04375 0.18 -1.5
917,432 + HGI48_RS04375 0.24 -1.2
917,466 + HGI48_RS04375 0.37 -0.5
917,470 + HGI48_RS04375 0.38 +0.8
917,471 - HGI48_RS04375 0.38 +0.7
917,483 - HGI48_RS04375 0.43 -0.4
917,513 + HGI48_RS04375 0.54 -0.9
917,514 - HGI48_RS04375 0.54 +0.1
917,515 + HGI48_RS04375 0.54 -1.0
917,516 - HGI48_RS04375 0.55 -0.2
917,543 - HGI48_RS04375 0.64 -0.7
917,633 - -1.1
917,636 + -2.2
917,636 + -0.2
917,636 + -1.2
917,636 + -1.2
917,636 + +0.6
917,637 - +0.8
917,637 - +0.1
917,637 - -0.2
917,637 - -0.2
917,637 - -0.3
917,656 - -0.5
917,668 + +0.0
917,708 + -1.9
917,713 + -1.5
917,713 + +1.1
917,714 - -0.7
917,779 - -1.1
917,830 - +0.3
917,886 - +1.3
917,940 + -2.6
917,952 + +0.7
917,976 - -0.9
918,016 - -0.6
918,017 + -1.2
918,017 + -0.5
918,099 - +0.1
918,104 - HGI48_RS04380 0.12 -2.7
918,144 + HGI48_RS04380 0.22 -0.2
918,148 + HGI48_RS04380 0.23 +1.7
918,165 + HGI48_RS04380 0.27 +1.7
918,231 + HGI48_RS04380 0.43 -0.5
918,232 - HGI48_RS04380 0.43 -1.2
918,242 + HGI48_RS04380 0.46 -1.5
918,242 + HGI48_RS04380 0.46 +2.4
918,243 - +1.8
918,335 - HGI48_RS04380 0.68 -1.9
918,335 - HGI48_RS04380 0.68 +0.8
918,341 + HGI48_RS04380 0.70 +1.6
918,341 + HGI48_RS04380 0.70 -0.2
918,342 - HGI48_RS04380 0.70 +0.3
918,342 - HGI48_RS04380 0.70 -0.7
918,342 - HGI48_RS04380 0.70 -0.2
918,350 - HGI48_RS04380 0.72 -0.9
918,350 - HGI48_RS04380 0.72 -2.1
918,356 - HGI48_RS04380 0.73 +0.7
918,401 + HGI48_RS04380 0.84 +1.3
918,420 - HGI48_RS04380 0.89 +0.7
918,431 + +2.0
918,432 - -0.9
918,468 - +1.1
918,495 + -0.5
918,496 - -0.6
918,534 + -1.5
918,547 - +0.1
918,610 + HGI48_RS04385 0.16 +0.1
918,610 + HGI48_RS04385 0.16 +0.3
918,642 + HGI48_RS04385 0.20 +0.0
918,643 - HGI48_RS04385 0.20 -1.7
918,888 + +2.4
919,070 - HGI48_RS04385 0.82 -1.9
919,078 + +0.1
919,203 + -0.5
919,203 + -2.1
919,204 - -1.6
919,293 + -0.7
919,293 + -0.3
919,317 + +0.4
919,317 + -0.1
919,317 + -0.9
919,318 - -2.1
919,318 - +0.1
919,421 - HGI48_RS04390 0.17 -0.7

Or see this region's nucleotide sequence